Wall clock time and date at job start Sun Mar 29 2020 22:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99805 * 2 1 4 4 C 1.53005 * 109.46963 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47006 * 67.84230 * 4 3 2 6 6 C 1.46903 * 110.99816 * 282.67359 * 5 4 3 7 7 C 1.50698 * 109.47010 * 169.40098 * 6 5 4 8 8 H 1.07994 * 120.00076 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99838 * 179.72463 * 7 6 5 10 10 N 1.31522 * 119.99880 * 0.27460 * 9 7 6 11 11 Si 1.86799 * 120.00164 * 180.27064 * 9 7 6 12 12 H 1.48497 * 109.47073 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47043 * 120.00133 * 11 9 7 14 14 H 1.48499 * 109.47649 * 240.00245 * 11 9 7 15 15 C 1.46897 * 111.00299 * 158.71972 * 5 4 3 16 16 C 1.53001 * 109.47050 * 287.95124 * 15 5 4 17 17 H 1.08997 * 115.54876 * 29.12764 * 16 15 5 18 18 C 1.52999 * 117.49616 * 243.45532 * 16 15 5 19 19 C 1.52999 * 117.49708 * 174.79517 * 16 15 5 20 20 H 1.09006 * 117.50120 * 214.97765 * 19 16 15 21 21 C 1.52999 * 117.50072 * 359.97438 * 19 16 15 22 22 H 1.08998 * 109.47335 * 299.99839 * 1 2 3 23 23 H 1.09000 * 109.47088 * 60.00678 * 1 2 3 24 24 H 1.09007 * 109.46843 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47188 * 60.00034 * 3 2 1 26 26 H 1.09002 * 109.47252 * 299.99752 * 3 2 1 27 27 H 1.08989 * 109.47285 * 307.83627 * 4 3 2 28 28 H 1.09003 * 109.46766 * 187.83864 * 4 3 2 29 29 H 1.09001 * 109.47227 * 49.39850 * 6 5 4 30 30 H 1.08997 * 109.46980 * 289.40066 * 6 5 4 31 31 H 0.97003 * 119.99290 * 179.97438 * 10 9 7 32 32 H 1.09010 * 109.46904 * 47.94902 * 15 5 4 33 33 H 1.08998 * 109.47385 * 167.94843 * 15 5 4 34 34 H 1.08991 * 117.50037 * 0.02562 * 18 16 15 35 35 H 1.09002 * 117.49986 * 145.02243 * 18 16 15 36 36 H 1.08997 * 109.47559 * 59.99538 * 21 19 16 37 37 H 1.09001 * 109.47010 * 180.02562 * 21 19 16 38 38 H 1.09001 * 109.46541 * 299.99382 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9828 0.6250 -1.2818 6 6 3.7593 -0.8261 -1.3295 7 6 3.9821 -1.3227 -2.7348 8 1 4.2613 -0.6297 -3.5145 9 6 3.8345 -2.6627 -3.0239 10 7 3.4940 -3.5067 -2.0744 11 14 4.1180 -3.2795 -4.7641 12 1 4.4895 -2.1388 -5.6392 13 1 5.2160 -4.2794 -4.7622 14 1 2.8746 -3.9109 -5.2744 15 6 5.3932 0.9490 -1.5342 16 6 5.5224 2.4357 -1.8719 17 1 4.7730 3.0868 -1.4218 18 6 6.0292 2.8015 -3.2684 19 6 6.9335 2.9998 -2.0493 20 1 7.1124 4.0222 -1.7164 21 6 8.1074 2.0342 -1.8749 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6885 1.8463 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8475 0.5278 0.8124 28 1 3.9779 2.1709 0.1408 29 1 2.7364 -1.0465 -1.0241 30 1 4.4553 -1.3233 -0.6538 31 1 3.3898 -4.4494 -2.2779 32 1 5.9821 0.7260 -0.6445 33 1 5.7588 0.3534 -2.3707 34 1 6.2702 1.9831 -3.9467 35 1 5.6136 3.6935 -3.7370 36 1 8.0259 1.2277 -2.6036 37 1 9.0443 2.5697 -2.0284 38 1 8.0884 1.6173 -0.8679 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617099110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:20 Heat of formation + Delta-G solvation = -22.533253 kcal Electronic energy + Delta-G solvation = -16462.307814 eV Core-core repulsion = 13919.761492 eV Total energy + Delta-G solvation = -2542.546322 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.31926 -37.30061 -35.31063 -32.42154 -29.53386 -28.39185 -27.11756 -25.84617 -24.57681 -22.11653 -21.22048 -20.12533 -18.77561 -16.50743 -15.76941 -15.70140 -15.35919 -14.62859 -14.45660 -13.79338 -13.68539 -13.10067 -12.75100 -12.61581 -12.15815 -11.89949 -11.65494 -11.45703 -11.19477 -11.15094 -10.88879 -10.72171 -10.69217 -10.42263 -10.18089 -9.78706 -9.45636 -9.26328 -9.15089 -8.81624 -8.24725 -7.08736 -5.88180 -3.87502 3.36949 3.44222 3.49029 4.12519 4.39685 4.52647 4.92529 5.05603 5.29628 5.35911 5.46833 5.55242 5.58672 5.75774 5.81563 5.85952 5.95879 5.97761 6.03786 6.09434 6.11655 6.20549 6.21435 6.22875 6.37852 6.44751 6.55499 6.58630 6.94182 7.54193 7.65843 7.77763 7.95242 8.35695 8.46026 8.72694 9.21411 9.74286 11.22482 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.011107 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.148076 B = 2520.411207 C = 4062.651522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.071 3.929 4 C 0.053 3.947 5 N -0.531 5.531 6 C 0.183 3.817 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.054 3.946 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.285 1.285 15 C 0.092 3.908 16 C -0.132 4.132 17 H 0.098 0.902 18 C -0.172 4.172 19 C -0.165 4.165 20 H 0.095 0.905 21 C -0.121 4.121 22 H 0.028 0.972 23 H 0.036 0.964 24 H 0.081 0.919 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.069 0.931 30 H -0.017 1.017 31 H 0.257 0.743 32 H 0.021 0.979 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 11.455 3.046 11.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C -0.007 4.007 4 C -0.076 4.076 5 N -0.256 5.256 6 C 0.059 3.941 7 C -0.540 4.540 8 H 0.078 0.922 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.036 4.036 16 C -0.151 4.151 17 H 0.116 0.884 18 C -0.209 4.209 19 C -0.184 4.184 20 H 0.113 0.887 21 C -0.178 4.178 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.001 0.999 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.085 11.294 2.703 11.664 hybrid contribution 0.331 -0.524 -0.306 0.691 sum 1.416 10.770 2.397 11.124 Atomic orbital electron populations 1.22645 0.82712 1.02295 0.98724 1.88159 1.18303 1.27113 1.94935 1.22523 0.94212 0.85136 0.98781 1.22085 0.93354 0.99219 0.92932 1.62127 1.17217 1.17855 1.28373 1.20059 0.98588 0.79162 0.96301 1.21246 1.45461 0.92367 0.94891 0.92185 1.24955 0.95887 0.96943 0.96864 1.69999 1.48702 1.02978 1.31980 0.86558 0.77629 0.78710 0.85196 1.19797 1.21303 1.21159 1.21549 0.89939 0.91949 1.00195 1.22465 0.95178 0.98007 0.99422 0.88370 1.23085 1.03708 1.02806 0.91312 1.22368 0.92326 0.99641 1.04082 0.88707 1.21306 0.96041 0.98406 1.02024 0.95309 0.94539 0.90062 0.94565 0.92955 0.94881 0.91064 0.91371 0.99936 0.93281 0.96060 0.89553 0.88732 0.89662 0.92175 0.92940 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.37 -7.49 7.90 -35.23 -0.28 -7.77 16 3 C 0.07 1.23 6.25 37.16 0.23 1.47 16 4 C 0.05 0.99 5.31 -3.82 -0.02 0.97 16 5 N -0.53 -11.77 4.37 -236.07 -1.03 -12.80 16 6 C 0.18 4.96 4.51 -4.98 -0.02 4.94 16 7 C -0.50 -14.46 8.29 -34.44 -0.29 -14.75 16 8 H 0.06 1.73 7.30 -52.49 -0.38 1.34 16 9 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 11 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C 0.09 1.83 4.16 -3.82 -0.02 1.81 16 16 C -0.13 -2.14 5.55 -90.62 -0.50 -2.65 16 17 H 0.10 1.54 6.93 -51.93 -0.36 1.18 16 18 C -0.17 -2.58 9.83 -26.69 -0.26 -2.85 16 19 C -0.17 -2.28 6.41 -90.58 -0.58 -2.86 16 20 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 21 C -0.12 -1.60 9.19 37.16 0.34 -1.26 16 22 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.03 0.65 7.97 -51.94 -0.41 0.24 16 28 H 0.07 1.12 6.48 -51.93 -0.34 0.79 16 29 H 0.07 1.98 5.18 -51.93 -0.27 1.71 16 30 H -0.02 -0.51 8.12 -51.93 -0.42 -0.93 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.02 0.42 7.67 -51.92 -0.40 0.02 16 33 H 0.09 1.92 6.37 -51.93 -0.33 1.59 16 34 H 0.09 1.52 7.94 -51.93 -0.41 1.10 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.85 7.90 -51.93 -0.41 0.44 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 LS Contribution 305.50 15.07 4.60 4.60 Total: -1.00 -31.32 305.50 -7.75 -39.06 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.66 Total: -1.53 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.10 Total: -12.06 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -0.29 Total: -39.48 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.28 Total: -7.77 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.32 -7.75 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.532 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds