Wall clock time and date at job start Sun Mar 29 2020 22:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99805 * 2 1 4 4 C 1.53005 * 109.46963 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47006 * 67.84230 * 4 3 2 6 6 C 1.46903 * 110.99816 * 282.67359 * 5 4 3 7 7 C 1.50698 * 109.47010 * 169.40098 * 6 5 4 8 8 H 1.07994 * 120.00076 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99838 * 179.72463 * 7 6 5 10 10 N 1.31522 * 119.99880 * 0.27460 * 9 7 6 11 11 Si 1.86799 * 120.00164 * 180.27064 * 9 7 6 12 12 H 1.48497 * 109.47073 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47043 * 120.00133 * 11 9 7 14 14 H 1.48499 * 109.47649 * 240.00245 * 11 9 7 15 15 C 1.46897 * 111.00299 * 158.71972 * 5 4 3 16 16 C 1.53001 * 109.47050 * 287.95124 * 15 5 4 17 17 H 1.08997 * 115.54876 * 29.12764 * 16 15 5 18 18 C 1.52999 * 117.49616 * 243.45532 * 16 15 5 19 19 C 1.52999 * 117.49708 * 174.79517 * 16 15 5 20 20 H 1.09006 * 117.50120 * 214.97765 * 19 16 15 21 21 C 1.52999 * 117.50072 * 359.97438 * 19 16 15 22 22 H 1.08998 * 109.47335 * 299.99839 * 1 2 3 23 23 H 1.09000 * 109.47088 * 60.00678 * 1 2 3 24 24 H 1.09007 * 109.46843 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47188 * 60.00034 * 3 2 1 26 26 H 1.09002 * 109.47252 * 299.99752 * 3 2 1 27 27 H 1.08989 * 109.47285 * 307.83627 * 4 3 2 28 28 H 1.09003 * 109.46766 * 187.83864 * 4 3 2 29 29 H 1.09001 * 109.47227 * 49.39850 * 6 5 4 30 30 H 1.08997 * 109.46980 * 289.40066 * 6 5 4 31 31 H 0.97003 * 119.99290 * 179.97438 * 10 9 7 32 32 H 1.09010 * 109.46904 * 47.94902 * 15 5 4 33 33 H 1.08998 * 109.47385 * 167.94843 * 15 5 4 34 34 H 1.08991 * 117.50037 * 0.02562 * 18 16 15 35 35 H 1.09002 * 117.49986 * 145.02243 * 18 16 15 36 36 H 1.08997 * 109.47559 * 59.99538 * 21 19 16 37 37 H 1.09001 * 109.47010 * 180.02562 * 21 19 16 38 38 H 1.09001 * 109.46541 * 299.99382 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9828 0.6250 -1.2818 6 6 3.7593 -0.8261 -1.3295 7 6 3.9821 -1.3227 -2.7348 8 1 4.2613 -0.6297 -3.5145 9 6 3.8345 -2.6627 -3.0239 10 7 3.4940 -3.5067 -2.0744 11 14 4.1180 -3.2795 -4.7641 12 1 4.4895 -2.1388 -5.6392 13 1 5.2160 -4.2794 -4.7622 14 1 2.8746 -3.9109 -5.2744 15 6 5.3932 0.9490 -1.5342 16 6 5.5224 2.4357 -1.8719 17 1 4.7730 3.0868 -1.4218 18 6 6.0292 2.8015 -3.2684 19 6 6.9335 2.9998 -2.0493 20 1 7.1124 4.0222 -1.7164 21 6 8.1074 2.0342 -1.8749 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6885 1.8463 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8475 0.5278 0.8124 28 1 3.9779 2.1709 0.1408 29 1 2.7364 -1.0465 -1.0241 30 1 4.4553 -1.3233 -0.6538 31 1 3.3898 -4.4494 -2.2779 32 1 5.9821 0.7260 -0.6445 33 1 5.7588 0.3534 -2.3707 34 1 6.2702 1.9831 -3.9467 35 1 5.6136 3.6935 -3.7370 36 1 8.0259 1.2277 -2.6036 37 1 9.0443 2.5697 -2.0284 38 1 8.0884 1.6173 -0.8679 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617099110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:20 Heat of formation + Delta-G solvation = -42.955622 kcal Electronic energy + Delta-G solvation = -16463.193394 eV Core-core repulsion = 13919.761492 eV Total energy + Delta-G solvation = -2543.431902 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.77348 -38.65346 -36.93022 -34.60191 -31.09151 -29.77288 -28.82711 -27.19360 -26.37509 -23.87439 -22.60285 -21.66403 -20.11636 -18.53016 -17.42975 -17.08349 -16.84759 -16.38875 -16.00782 -15.35571 -15.22845 -14.60418 -14.31956 -13.95059 -13.60369 -13.59679 -13.34743 -12.90333 -12.78965 -12.58814 -12.52731 -12.37366 -12.22304 -12.02038 -11.98553 -11.57090 -11.09344 -10.72967 -10.60297 -10.54136 -10.26812 -8.91889 -8.13240 -6.21313 1.38877 1.39590 1.52989 2.42306 2.88759 3.05508 3.20122 3.39712 3.85246 4.03189 4.12402 4.26807 4.40070 4.47893 4.50251 4.58864 4.61142 4.65713 4.71278 4.78016 4.88619 4.90380 4.96277 4.99703 5.03618 5.07049 5.20169 5.33765 5.44622 5.52351 5.63926 5.74313 6.19346 6.41124 6.54880 6.76240 6.96810 7.45980 8.97877 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.011107 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.148076 B = 2520.411207 C = 4062.651522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.412 6.412 3 C 0.070 3.930 4 C 0.051 3.949 5 N -0.536 5.536 6 C 0.200 3.800 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.000 4.000 10 N -0.933 5.933 11 Si 0.963 3.037 12 H -0.265 1.265 13 H -0.279 1.279 14 H -0.278 1.278 15 C 0.098 3.902 16 C -0.147 4.147 17 H 0.111 0.889 18 C -0.175 4.175 19 C -0.141 4.141 20 H 0.125 0.875 21 C -0.124 4.124 22 H 0.060 0.940 23 H 0.042 0.958 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.016 0.984 28 H 0.107 0.893 29 H 0.048 0.952 30 H -0.058 1.058 31 H 0.261 0.739 32 H 0.016 0.984 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 13.571 2.506 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.332 6.332 3 C -0.006 4.006 4 C -0.078 4.078 5 N -0.260 5.260 6 C 0.075 3.925 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.198 4.198 10 N -0.574 5.574 11 Si 0.788 3.212 12 H -0.189 1.189 13 H -0.205 1.205 14 H -0.204 1.204 15 C -0.030 4.030 16 C -0.166 4.166 17 H 0.129 0.871 18 C -0.212 4.212 19 C -0.160 4.160 20 H 0.143 0.857 21 C -0.181 4.181 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.125 0.875 29 H 0.066 0.934 30 H -0.041 1.041 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.323 13.437 2.165 13.675 hybrid contribution 0.260 -1.160 -0.078 1.192 sum 1.583 12.277 2.087 12.553 Atomic orbital electron populations 1.22789 0.80668 1.02634 1.00557 1.88081 1.20761 1.29080 1.95292 1.22630 0.92961 0.84414 1.00597 1.22267 0.94836 1.00202 0.90457 1.62077 1.18727 1.14530 1.30708 1.19671 0.96223 0.82122 0.94530 1.21512 1.45456 0.92808 0.95591 0.92583 1.25862 0.95409 0.97102 1.01389 1.70135 1.49537 1.03387 1.34355 0.85435 0.77803 0.78250 0.79738 1.18892 1.20511 1.20374 1.21439 0.88461 0.94436 0.98653 1.22307 0.97843 0.95314 1.01108 0.87060 1.23135 1.04208 1.03011 0.90883 1.22503 0.90677 1.00746 1.02026 0.85701 1.21355 0.97344 0.98222 1.01228 0.92119 0.93897 0.90628 0.90711 0.92884 0.96563 0.87517 0.93386 1.04066 0.93017 0.96589 0.92803 0.90534 0.87552 0.94029 0.90313 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 11.01 113.37 1.25 2.17 16 2 O -0.41 -16.97 7.90 -148.98 -1.18 -18.15 16 3 C 0.07 2.37 6.25 71.98 0.45 2.82 16 4 C 0.05 1.86 5.31 86.30 0.46 2.32 16 5 N -0.54 -24.23 4.37 -900.78 -3.93 -28.16 16 6 C 0.20 11.36 4.51 85.56 0.39 11.75 16 7 C -0.52 -30.73 8.29 25.60 0.21 -30.52 16 8 H 0.06 3.31 7.30 -2.91 -0.02 3.29 16 9 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 10 N -0.93 -58.73 13.29 21.45 0.28 -58.44 16 11 Si 0.96 46.21 29.54 68.60 2.03 48.24 16 12 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 C 0.10 3.97 4.16 86.30 0.36 4.33 16 16 C -0.15 -4.54 5.55 -10.79 -0.06 -4.60 16 17 H 0.11 3.16 6.93 -2.39 -0.02 3.14 16 18 C -0.18 -4.95 9.83 30.62 0.30 -4.65 16 19 C -0.14 -3.50 6.41 -10.77 -0.07 -3.57 16 20 H 0.13 2.44 8.14 -2.38 -0.02 2.42 16 21 C -0.12 -3.10 9.19 71.98 0.66 -2.44 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.02 0.65 7.97 -2.39 -0.02 0.63 16 28 H 0.11 3.13 6.48 -2.39 -0.02 3.11 16 29 H 0.05 2.93 5.18 -2.39 -0.01 2.92 16 30 H -0.06 -3.68 8.12 -2.39 -0.02 -3.70 16 31 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.02 0.65 7.67 -2.38 -0.02 0.63 16 33 H 0.05 2.50 6.37 -2.39 -0.02 2.48 16 34 H 0.08 2.43 7.94 -2.39 -0.02 2.41 16 35 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.04 1.17 7.90 -2.39 -0.02 1.16 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.38 7.83 -2.39 -0.02 1.36 16 Total: -1.00 -69.95 305.50 2.61 -67.34 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.00 Total: 11.11 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 4.41 Total: -21.94 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -3.65 Total: -86.61 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.18 Total: -18.15 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -69.95 2.61 -67.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.383 kcal (2) G-P(sol) polarization free energy of solvation -69.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds