Wall clock time and date at job start Sun Mar 29 2020 22:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99748 * 2 1 4 4 C 1.53003 * 109.46987 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47083 * 65.08294 * 4 3 2 6 6 C 1.46905 * 110.99939 * 75.90396 * 5 4 3 7 7 C 1.50697 * 109.47336 * 199.58252 * 6 5 4 8 8 H 1.08000 * 119.99607 * 355.03635 * 7 6 5 9 9 C 1.37874 * 120.00149 * 175.03201 * 7 6 5 10 10 N 1.31512 * 120.00218 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99941 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47340 * 270.00404 * 11 9 7 13 13 H 1.48501 * 109.47351 * 149.99844 * 11 9 7 14 14 H 1.48505 * 109.47077 * 30.00012 * 11 9 7 15 15 C 1.46893 * 111.00530 * 199.86473 * 5 4 3 16 16 C 1.52999 * 109.47092 * 66.04408 * 15 5 4 17 17 H 1.09000 * 115.54967 * 330.58192 * 16 15 5 18 18 C 1.52996 * 117.49929 * 116.25648 * 16 15 5 19 19 C 1.53006 * 117.49728 * 184.91707 * 16 15 5 20 20 H 1.09001 * 117.49923 * 359.97438 * 19 16 15 21 21 C 1.53001 * 117.49642 * 145.01975 * 19 16 15 22 22 H 1.09004 * 109.46919 * 300.00159 * 1 2 3 23 23 H 1.09000 * 109.47415 * 59.99845 * 1 2 3 24 24 H 1.08992 * 109.47253 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47241 * 60.00838 * 3 2 1 26 26 H 1.09001 * 109.47482 * 299.99807 * 3 2 1 27 27 H 1.09002 * 109.47106 * 305.08763 * 4 3 2 28 28 H 1.08996 * 109.47585 * 185.08329 * 4 3 2 29 29 H 1.09007 * 109.46472 * 79.58379 * 6 5 4 30 30 H 1.08998 * 109.46826 * 319.58849 * 6 5 4 31 31 H 0.97001 * 120.00004 * 179.97438 * 10 9 7 32 32 H 1.08995 * 109.47629 * 186.04882 * 15 5 4 33 33 H 1.09006 * 109.46582 * 306.04590 * 15 5 4 34 34 H 1.09001 * 117.50106 * 214.98011 * 18 16 15 35 35 H 1.09002 * 117.50018 * 0.02562 * 18 16 15 36 36 H 1.09007 * 109.46935 * 60.00217 * 21 19 16 37 37 H 1.09002 * 109.46810 * 179.97438 * 21 19 16 38 38 H 1.08996 * 109.47477 * 300.00001 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9780 0.5641 -1.2552 6 6 3.9145 1.5223 -2.3669 7 6 3.8995 0.7740 -3.6749 8 1 4.0145 -0.2999 -3.6839 9 6 3.7390 1.4601 -4.8599 10 7 3.7254 0.8070 -6.0013 11 14 3.5408 3.3176 -4.8442 12 1 2.0999 3.6608 -4.7382 13 1 4.0937 3.8851 -6.1002 14 1 4.2712 3.8835 -3.6817 15 6 5.3295 0.0050 -1.1186 16 6 5.3018 -1.1598 -0.1270 17 1 4.5419 -1.0961 0.6519 18 6 5.6517 -2.5503 -0.6606 19 6 6.6389 -1.8057 0.2417 20 1 7.5383 -1.4011 -0.2225 21 6 6.8067 -2.3133 1.6753 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8507 0.5673 0.8418 28 1 3.9785 2.1764 0.0917 29 1 4.7856 2.1767 -2.3326 30 1 3.0073 2.1201 -2.2798 31 1 3.6121 1.2898 -6.8350 32 1 5.6750 -0.3519 -2.0888 33 1 6.0068 0.7771 -0.7533 34 1 5.1222 -3.4016 -0.2326 35 1 5.9021 -2.6353 -1.7181 36 1 6.0530 -3.0732 1.8822 37 1 7.8002 -2.7459 1.7935 38 1 6.6863 -1.4831 2.3712 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617099111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:22 Heat of formation + Delta-G solvation = -19.481198 kcal Electronic energy + Delta-G solvation = -16327.142848 eV Core-core repulsion = 13784.728873 eV Total energy + Delta-G solvation = -2542.413975 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.34378 -37.29671 -35.64807 -32.44626 -29.83957 -28.97747 -27.36913 -25.95398 -24.36037 -22.29853 -20.97302 -20.00151 -19.38990 -16.83533 -16.04282 -15.78119 -14.99848 -14.80798 -14.48037 -13.98910 -13.73515 -13.24846 -12.99980 -12.71870 -12.33945 -12.20916 -11.95824 -11.64368 -11.54708 -11.25093 -11.06128 -10.85865 -10.61929 -10.46681 -10.13057 -9.81577 -9.53298 -9.31421 -9.22362 -9.14054 -8.51955 -7.23358 -6.00377 -3.96149 3.28546 3.36381 3.37756 4.11078 4.24744 4.44547 4.71337 5.09713 5.25201 5.31621 5.33056 5.45820 5.51949 5.57853 5.68703 5.74658 5.82833 5.90895 5.92677 5.96183 5.99976 6.06423 6.13602 6.23673 6.30010 6.33857 6.40965 6.56698 6.79648 6.92285 6.96106 7.60030 7.69590 8.01093 8.11911 8.73236 9.11825 9.61812 11.13168 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.008862 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.771855 B = 3158.738718 C = 4095.748602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.070 3.930 4 C 0.050 3.950 5 N -0.514 5.514 6 C 0.162 3.838 7 C -0.500 4.500 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.901 5.901 11 Si 0.872 3.128 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.094 3.906 16 C -0.131 4.131 17 H 0.104 0.896 18 C -0.167 4.167 19 C -0.169 4.169 20 H 0.099 0.901 21 C -0.117 4.117 22 H 0.030 0.970 23 H 0.039 0.961 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.038 0.962 29 H -0.013 1.013 30 H 0.022 0.978 31 H 0.262 0.738 32 H 0.086 0.914 33 H 0.021 0.979 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -1.039 14.331 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.008 4.008 4 C -0.079 4.079 5 N -0.238 5.238 6 C 0.036 3.964 7 C -0.539 4.539 8 H 0.099 0.901 9 C -0.134 4.134 10 N -0.541 5.541 11 Si 0.699 3.301 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.034 4.034 16 C -0.150 4.150 17 H 0.122 0.878 18 C -0.204 4.204 19 C -0.188 4.188 20 H 0.117 0.883 21 C -0.174 4.174 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.004 0.996 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.163 -1.556 14.016 14.103 hybrid contribution 0.089 1.969 -0.046 1.971 sum 0.252 0.412 13.970 13.978 Atomic orbital electron populations 1.22660 0.82488 1.02129 0.99182 1.87999 1.18201 1.27388 1.95118 1.22558 0.94148 0.84963 0.99092 1.22132 0.93411 0.97562 0.94751 1.61853 1.23491 1.35797 1.02614 1.20217 0.94823 0.90949 0.90460 1.21044 1.48615 0.96280 0.87929 0.90056 1.24898 0.95224 0.97770 0.95539 1.69895 1.51050 1.35572 0.97582 0.86920 0.78668 0.86879 0.77603 1.20277 1.21210 1.19405 1.21570 0.89484 0.93752 0.98583 1.22458 0.96970 0.94304 1.01253 0.87777 1.23109 1.02314 0.95561 0.99420 1.22417 0.94439 1.05539 0.96399 0.88304 1.21311 1.01246 1.00372 0.94511 0.95194 0.94245 0.90160 0.94337 0.92978 0.90772 0.94435 0.99567 0.96008 0.92780 0.89543 0.96118 0.89459 0.88716 0.92792 0.92702 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.72 10.65 -35.23 -0.38 -7.10 16 3 C 0.07 1.18 6.12 37.16 0.23 1.41 16 4 C 0.05 0.89 5.18 -3.82 -0.02 0.87 16 5 N -0.51 -11.04 4.30 -236.07 -1.02 -12.06 16 6 C 0.16 3.97 3.63 -4.98 -0.02 3.96 16 7 C -0.50 -14.46 9.17 -34.44 -0.32 -14.78 16 8 H 0.08 2.59 7.89 -52.49 -0.41 2.17 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 11 Si 0.87 21.66 27.37 -169.99 -4.65 17.01 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.27 -6.44 6.69 56.52 0.38 -6.06 16 15 C 0.09 1.83 5.06 -3.83 -0.02 1.82 16 16 C -0.13 -2.17 5.27 -90.62 -0.48 -2.65 16 17 H 0.10 1.74 6.44 -51.93 -0.33 1.40 16 18 C -0.17 -2.60 9.83 -26.69 -0.26 -2.86 16 19 C -0.17 -2.35 6.13 -90.58 -0.56 -2.91 16 20 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 21 C -0.12 -1.34 10.19 37.16 0.38 -0.96 16 22 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.96 6.67 -51.93 -0.35 0.62 16 27 H 0.07 1.20 6.00 -51.93 -0.31 0.89 16 28 H 0.04 0.63 8.00 -51.93 -0.42 0.21 16 29 H -0.01 -0.33 7.40 -51.93 -0.38 -0.71 16 30 H 0.02 0.54 5.61 -51.93 -0.29 0.24 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.09 1.89 7.04 -51.93 -0.37 1.52 16 33 H 0.02 0.39 8.12 -51.93 -0.42 -0.04 16 34 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 35 H 0.09 1.56 8.03 -51.93 -0.42 1.14 16 36 H 0.05 0.60 7.90 -51.92 -0.41 0.19 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -31.34 306.69 -7.34 -38.68 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.65 Total: -1.30 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -0.05 Total: -12.67 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.24 Total: -39.25 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.38 Total: -7.10 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.65 Total: 17.01 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.34 -7.34 -38.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.199 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds