Wall clock time and date at job start Sun Mar 29 2020 22:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99748 * 2 1 4 4 C 1.53003 * 109.46987 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47083 * 65.08294 * 4 3 2 6 6 C 1.46905 * 110.99939 * 75.90396 * 5 4 3 7 7 C 1.50697 * 109.47336 * 199.58252 * 6 5 4 8 8 H 1.08000 * 119.99607 * 355.03635 * 7 6 5 9 9 C 1.37874 * 120.00149 * 175.03201 * 7 6 5 10 10 N 1.31512 * 120.00218 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99941 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47340 * 270.00404 * 11 9 7 13 13 H 1.48501 * 109.47351 * 149.99844 * 11 9 7 14 14 H 1.48505 * 109.47077 * 30.00012 * 11 9 7 15 15 C 1.46893 * 111.00530 * 199.86473 * 5 4 3 16 16 C 1.52999 * 109.47092 * 66.04408 * 15 5 4 17 17 H 1.09000 * 115.54967 * 330.58192 * 16 15 5 18 18 C 1.52996 * 117.49929 * 116.25648 * 16 15 5 19 19 C 1.53006 * 117.49728 * 184.91707 * 16 15 5 20 20 H 1.09001 * 117.49923 * 359.97438 * 19 16 15 21 21 C 1.53001 * 117.49642 * 145.01975 * 19 16 15 22 22 H 1.09004 * 109.46919 * 300.00159 * 1 2 3 23 23 H 1.09000 * 109.47415 * 59.99845 * 1 2 3 24 24 H 1.08992 * 109.47253 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47241 * 60.00838 * 3 2 1 26 26 H 1.09001 * 109.47482 * 299.99807 * 3 2 1 27 27 H 1.09002 * 109.47106 * 305.08763 * 4 3 2 28 28 H 1.08996 * 109.47585 * 185.08329 * 4 3 2 29 29 H 1.09007 * 109.46472 * 79.58379 * 6 5 4 30 30 H 1.08998 * 109.46826 * 319.58849 * 6 5 4 31 31 H 0.97001 * 120.00004 * 179.97438 * 10 9 7 32 32 H 1.08995 * 109.47629 * 186.04882 * 15 5 4 33 33 H 1.09006 * 109.46582 * 306.04590 * 15 5 4 34 34 H 1.09001 * 117.50106 * 214.98011 * 18 16 15 35 35 H 1.09002 * 117.50018 * 0.02562 * 18 16 15 36 36 H 1.09007 * 109.46935 * 60.00217 * 21 19 16 37 37 H 1.09002 * 109.46810 * 179.97438 * 21 19 16 38 38 H 1.08996 * 109.47477 * 300.00001 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9780 0.5641 -1.2552 6 6 3.9145 1.5223 -2.3669 7 6 3.8995 0.7740 -3.6749 8 1 4.0145 -0.2999 -3.6839 9 6 3.7390 1.4601 -4.8599 10 7 3.7254 0.8070 -6.0013 11 14 3.5408 3.3176 -4.8442 12 1 2.0999 3.6608 -4.7382 13 1 4.0937 3.8851 -6.1002 14 1 4.2712 3.8835 -3.6817 15 6 5.3295 0.0050 -1.1186 16 6 5.3018 -1.1598 -0.1270 17 1 4.5419 -1.0961 0.6519 18 6 5.6517 -2.5503 -0.6606 19 6 6.6389 -1.8057 0.2417 20 1 7.5383 -1.4011 -0.2225 21 6 6.8067 -2.3133 1.6753 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8507 0.5673 0.8418 28 1 3.9785 2.1764 0.0917 29 1 4.7856 2.1767 -2.3326 30 1 3.0073 2.1201 -2.2798 31 1 3.6121 1.2898 -6.8350 32 1 5.6750 -0.3519 -2.0888 33 1 6.0068 0.7771 -0.7533 34 1 5.1222 -3.4016 -0.2326 35 1 5.9021 -2.6353 -1.7181 36 1 6.0530 -3.0732 1.8822 37 1 7.8002 -2.7459 1.7935 38 1 6.6863 -1.4831 2.3712 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617099111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:22 Heat of formation + Delta-G solvation = -40.798133 kcal Electronic energy + Delta-G solvation = -16328.067220 eV Core-core repulsion = 13784.728873 eV Total energy + Delta-G solvation = -2543.338347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76465 -38.56146 -37.15978 -34.63348 -31.25581 -30.54828 -28.82050 -27.15250 -25.98997 -23.96472 -22.43959 -21.33145 -20.84067 -19.00516 -17.40472 -17.16772 -16.50566 -16.35409 -15.99403 -15.45923 -15.21443 -14.80683 -14.42231 -14.28358 -13.77002 -13.59371 -13.43409 -13.05640 -12.90750 -12.60208 -12.50330 -12.40414 -12.22294 -12.00364 -11.84180 -11.51335 -11.42231 -10.82642 -10.71745 -10.55041 -10.43210 -8.89272 -8.27158 -6.29515 1.32304 1.34332 1.45126 2.33921 2.82137 3.02699 3.05812 3.28279 3.83326 3.99841 4.11762 4.22520 4.32028 4.45380 4.51476 4.52250 4.58485 4.60969 4.68335 4.72073 4.76081 4.89533 4.92519 4.94392 5.00778 5.01331 5.05421 5.09979 5.22997 5.39833 5.53142 5.57369 6.03057 6.40564 6.45806 6.72801 6.76583 7.33216 8.90218 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.008862 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.771855 B = 3158.738718 C = 4095.748602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.069 3.931 4 C 0.049 3.951 5 N -0.535 5.535 6 C 0.174 3.826 7 C -0.509 4.509 8 H 0.031 0.969 9 C 0.005 3.995 10 N -0.950 5.950 11 Si 0.947 3.053 12 H -0.265 1.265 13 H -0.281 1.281 14 H -0.250 1.250 15 C 0.099 3.901 16 C -0.142 4.142 17 H 0.109 0.891 18 C -0.180 4.180 19 C -0.142 4.142 20 H 0.100 0.900 21 C -0.114 4.114 22 H 0.059 0.941 23 H 0.030 0.970 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.031 0.969 27 H 0.092 0.908 28 H 0.054 0.946 29 H -0.013 1.013 30 H 0.028 0.972 31 H 0.266 0.734 32 H 0.047 0.953 33 H 0.031 0.969 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 0.430 16.950 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.008 4.008 4 C -0.079 4.079 5 N -0.259 5.259 6 C 0.047 3.953 7 C -0.548 4.548 8 H 0.049 0.951 9 C -0.192 4.192 10 N -0.592 5.592 11 Si 0.770 3.230 12 H -0.190 1.190 13 H -0.206 1.206 14 H -0.174 1.174 15 C -0.029 4.029 16 C -0.161 4.161 17 H 0.127 0.873 18 C -0.217 4.217 19 C -0.161 4.161 20 H 0.118 0.882 21 C -0.171 4.171 22 H 0.077 0.923 23 H 0.049 0.951 24 H 0.109 0.891 25 H 0.095 0.905 26 H 0.050 0.950 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.005 0.995 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.097 -0.097 16.666 16.666 hybrid contribution 0.101 1.385 -0.862 1.634 sum 0.198 1.288 15.804 15.857 Atomic orbital electron populations 1.22839 0.80644 1.03256 1.00150 1.87947 1.20376 1.28270 1.95343 1.22618 0.93533 0.84768 0.99913 1.22270 0.94156 0.98436 0.93056 1.61736 1.24716 1.35704 1.03766 1.19941 0.94832 0.90931 0.89630 1.21254 1.48452 0.94406 0.90677 0.95087 1.25873 0.94680 1.03814 0.94796 1.70064 1.52467 1.38120 0.98514 0.85724 0.79410 0.79482 0.78382 1.18962 1.20642 1.17355 1.21466 0.88853 0.95059 0.97537 1.22320 0.99331 0.93433 1.00996 0.87323 1.23136 1.03926 0.95732 0.98930 1.22524 0.92995 1.02890 0.97682 0.88180 1.21340 1.02509 1.00936 0.92341 0.92278 0.95102 0.89115 0.90460 0.95029 0.89011 0.92828 0.99539 0.95364 0.92520 0.93466 0.95061 0.88136 0.90848 0.92333 0.90920 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -14.04 10.65 -148.98 -1.59 -15.63 16 3 C 0.07 2.18 6.12 71.98 0.44 2.62 16 4 C 0.05 1.62 5.18 86.30 0.45 2.07 16 5 N -0.54 -23.06 4.30 -900.78 -3.88 -26.93 16 6 C 0.17 8.57 3.63 85.56 0.31 8.88 16 7 C -0.51 -30.65 9.17 25.60 0.23 -30.41 16 8 H 0.03 2.11 7.89 -2.91 -0.02 2.09 16 9 C 0.00 0.30 5.47 84.65 0.46 0.76 16 10 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 11 Si 0.95 44.74 27.37 68.60 1.88 46.61 16 12 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.25 -10.95 6.69 99.48 0.67 -10.28 16 15 C 0.10 3.91 5.06 86.30 0.44 4.35 16 16 C -0.14 -4.63 5.27 -10.79 -0.06 -4.69 16 17 H 0.11 3.45 6.44 -2.39 -0.02 3.44 16 18 C -0.18 -5.64 9.83 30.62 0.30 -5.34 16 19 C -0.14 -3.74 6.13 -10.77 -0.07 -3.81 16 20 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 21 C -0.11 -2.24 10.19 71.98 0.73 -1.51 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.03 1.12 6.67 -2.39 -0.02 1.11 16 27 H 0.09 2.73 6.00 -2.39 -0.01 2.72 16 28 H 0.05 1.63 8.00 -2.39 -0.02 1.61 16 29 H -0.01 -0.63 7.40 -2.38 -0.02 -0.65 16 30 H 0.03 1.36 5.61 -2.39 -0.01 1.35 16 31 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 32 H 0.05 2.20 7.04 -2.39 -0.02 2.18 16 33 H 0.03 1.15 8.12 -2.38 -0.02 1.13 16 34 H 0.10 2.84 8.05 -2.39 -0.02 2.82 16 35 H 0.07 2.58 8.03 -2.39 -0.02 2.56 16 36 H 0.06 1.12 7.90 -2.38 -0.02 1.10 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -70.22 306.69 2.17 -68.06 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.96 Total: 13.72 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 4.49 Total: -25.11 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -3.58 Total: -87.66 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -1.59 Total: -15.63 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.61 kcal Total: -70.22 2.17 -68.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.257 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds