Wall clock time and date at job start Sun Mar 29 2020 21:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 N 1.46902 * 109.47489 * 64.99980 * 3 2 1 14 14 C 1.47436 * 111.00179 * 69.87121 * 13 3 2 15 15 C 1.54322 * 107.23446 * 123.26054 * 14 13 3 16 16 C 1.55144 * 103.01677 * 22.28599 * 15 14 13 17 17 C 1.47845 * 111.00082 * 190.71874 * 13 3 2 18 18 H 1.09002 * 110.37227 * 332.46125 * 17 13 3 19 19 C 1.52999 * 110.37559 * 94.80455 * 17 13 3 20 20 O 1.42906 * 109.47220 * 64.99897 * 19 17 13 21 21 C 1.42897 * 113.99868 * 180.02562 * 20 19 17 22 22 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 24 24 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 25 25 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 26 26 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 27 27 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.88861 * 242.66686 * 14 13 3 29 29 H 1.08999 * 109.88942 * 3.85577 * 14 13 3 30 30 H 1.09005 * 110.70402 * 140.66612 * 15 14 13 31 31 H 1.08997 * 110.70456 * 263.72488 * 15 14 13 32 32 H 1.08997 * 110.99120 * 82.43758 * 16 15 14 33 33 H 1.09000 * 110.98905 * 206.25907 * 16 15 14 34 34 H 1.09002 * 109.46830 * 184.99692 * 19 17 13 35 35 H 1.09002 * 109.46859 * 304.99759 * 19 17 13 36 36 H 1.08994 * 109.47263 * 59.99863 * 21 20 19 37 37 H 1.08997 * 109.46829 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.46862 * 299.99681 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 7 1.6513 2.0993 1.2552 14 6 2.4040 1.5464 2.3960 15 6 3.1297 2.7247 3.0791 16 6 2.2962 3.9546 2.6326 17 6 1.8980 3.5556 1.1897 18 1 2.7121 3.7717 0.4978 19 6 0.6264 4.2928 0.7649 20 8 -0.3750 4.1342 1.7719 21 6 -1.6098 4.7877 1.4715 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3635 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.8771 0.4812 -2.1123 28 1 1.7177 1.0754 3.0998 29 1 3.1328 0.8177 2.0412 30 1 3.1054 2.6157 4.1634 31 1 4.1572 2.8024 2.7239 32 1 1.4143 4.0777 3.2611 33 1 2.9040 4.8594 2.6337 34 1 0.8469 5.3524 0.6353 35 1 0.2640 3.8793 -0.1763 36 1 -2.0185 4.3841 0.5452 37 1 -2.3169 4.6194 2.2838 38 1 -1.4361 5.8576 1.3563 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696537156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:35 Heat of formation + Delta-G solvation = -42.141386 kcal Electronic energy + Delta-G solvation = -17267.049733 eV Core-core repulsion = 14723.653139 eV Total energy + Delta-G solvation = -2543.396594 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.87557 -36.93064 -34.20866 -31.94123 -30.05363 -29.55880 -26.63785 -26.25890 -24.26158 -22.56182 -21.14799 -19.75633 -18.77261 -16.86511 -16.15069 -15.42112 -15.29769 -14.84862 -14.35684 -13.69749 -13.41474 -12.84457 -12.63722 -12.49520 -12.33297 -11.96818 -11.70432 -11.38761 -11.21593 -10.92801 -10.74923 -10.59164 -10.34568 -10.06855 -9.99335 -9.92823 -9.66862 -9.41748 -9.22464 -9.10515 -8.55314 -7.10571 -6.11666 -4.11300 3.26356 3.37087 3.39471 4.23682 4.38155 4.90481 5.20362 5.36077 5.39947 5.50804 5.54791 5.73322 5.81682 5.85467 5.99903 6.04855 6.06314 6.12527 6.24715 6.31660 6.39004 6.50407 6.55313 6.70934 6.73637 6.81033 6.91002 7.00989 7.08226 7.18250 7.29979 7.55927 7.62606 8.15247 8.24629 8.47572 8.92351 9.52663 11.00870 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.010386 C = 0.009069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.672238 B = 2695.198451 C = 3086.607159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.173 3.827 4 H 0.033 0.967 5 C -0.543 4.543 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.265 1.265 12 H -0.299 1.299 13 N -0.506 5.506 14 C 0.050 3.950 15 C -0.137 4.137 16 C -0.118 4.118 17 C 0.075 3.925 18 H 0.081 0.919 19 C 0.081 3.919 20 O -0.372 6.372 21 C 0.032 3.968 22 H 0.031 0.969 23 H 0.064 0.936 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.263 0.737 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 5.128 4.819 12.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.065 3.935 4 H 0.051 0.949 5 C -0.581 4.581 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.190 1.190 12 H -0.227 1.227 13 N -0.229 5.229 14 C -0.079 4.079 15 C -0.176 4.176 16 C -0.156 4.156 17 C -0.034 4.034 18 H 0.098 0.902 19 C 0.003 3.997 20 O -0.290 6.290 21 C -0.065 4.065 22 H 0.050 0.950 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.128 4.867 4.936 12.273 hybrid contribution 0.420 -0.231 -1.331 1.414 sum -9.708 4.636 3.605 11.347 Atomic orbital electron populations 1.21723 0.97452 0.99182 1.01636 1.21845 0.94006 0.99215 1.00373 1.19890 0.94390 0.90746 0.88453 0.94900 1.21725 0.90573 1.38811 1.07026 0.90219 1.25000 0.94703 0.95385 0.97876 1.69918 1.08803 1.45134 1.29736 0.86862 0.80673 0.79911 0.80824 1.20560 1.18976 1.22721 1.63637 1.53990 1.01235 1.04084 1.22653 0.95740 0.97012 0.92445 1.22735 0.99554 0.95910 0.99369 1.22593 0.99384 0.97107 0.96518 1.22510 0.93968 0.89910 0.96994 0.90162 1.22475 0.88979 0.97302 0.90900 1.87970 1.21987 1.74703 1.44383 1.22642 0.87451 0.95737 1.00712 0.94970 0.91663 0.94303 0.93788 0.92410 0.92716 0.92907 0.90581 0.92421 0.91629 0.90495 0.92400 0.94171 0.93514 0.94641 0.90384 0.95006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.80 37.16 0.36 -2.35 16 2 C -0.12 -2.58 4.87 -26.73 -0.13 -2.71 16 3 C 0.17 4.04 1.22 -68.86 -0.08 3.96 16 4 H 0.03 0.81 7.13 -51.93 -0.37 0.44 16 5 C -0.54 -14.58 6.83 -34.44 -0.24 -14.81 16 6 H 0.08 2.31 6.46 -52.49 -0.34 1.97 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 9 Si 0.89 21.93 24.41 -169.99 -4.15 17.78 16 10 H -0.28 -6.78 6.83 56.52 0.39 -6.40 16 11 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 12 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 13 N -0.51 -10.50 4.20 -216.85 -0.91 -11.41 16 14 C 0.05 0.99 5.33 -2.84 -0.02 0.97 16 15 C -0.14 -2.44 6.72 -24.90 -0.17 -2.61 16 16 C -0.12 -2.00 6.43 -24.59 -0.16 -2.16 16 17 C 0.08 1.43 2.61 -66.19 -0.17 1.26 16 18 H 0.08 1.72 7.10 -51.93 -0.37 1.35 16 19 C 0.08 1.35 5.91 37.16 0.22 1.57 16 20 O -0.37 -6.13 9.45 -35.23 -0.33 -6.47 16 21 C 0.03 0.39 11.01 101.05 1.11 1.50 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 1.23 7.75 -51.93 -0.40 0.83 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.04 1.03 3.22 -51.93 -0.17 0.86 16 26 H 0.06 1.27 7.05 -51.93 -0.37 0.90 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.71 5.66 -51.93 -0.29 1.42 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.26 7.73 -51.93 -0.40 0.86 16 32 H 0.08 1.29 7.05 -51.93 -0.37 0.93 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 287.53 15.07 4.33 4.33 Total: -1.00 -29.12 287.53 -6.14 -35.25 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.49 Total: 0.13 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 0.64 Total: -13.42 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.14 Total: -37.60 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.33 Total: -6.47 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.15 Total: 17.78 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.12 -6.14 -35.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696537156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.889 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds