Wall clock time and date at job start Sun Mar 29 2020 21:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 N 1.46902 * 109.47489 * 64.99980 * 3 2 1 14 14 C 1.47436 * 111.00179 * 69.87121 * 13 3 2 15 15 C 1.54322 * 107.23446 * 123.26054 * 14 13 3 16 16 C 1.55144 * 103.01677 * 22.28599 * 15 14 13 17 17 C 1.47845 * 111.00082 * 190.71874 * 13 3 2 18 18 H 1.09002 * 110.37227 * 332.46125 * 17 13 3 19 19 C 1.52999 * 110.37559 * 94.80455 * 17 13 3 20 20 O 1.42906 * 109.47220 * 64.99897 * 19 17 13 21 21 C 1.42897 * 113.99868 * 180.02562 * 20 19 17 22 22 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 24 24 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 25 25 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 26 26 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 27 27 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.88861 * 242.66686 * 14 13 3 29 29 H 1.08999 * 109.88942 * 3.85577 * 14 13 3 30 30 H 1.09005 * 110.70402 * 140.66612 * 15 14 13 31 31 H 1.08997 * 110.70456 * 263.72488 * 15 14 13 32 32 H 1.08997 * 110.99120 * 82.43758 * 16 15 14 33 33 H 1.09000 * 110.98905 * 206.25907 * 16 15 14 34 34 H 1.09002 * 109.46830 * 184.99692 * 19 17 13 35 35 H 1.09002 * 109.46859 * 304.99759 * 19 17 13 36 36 H 1.08994 * 109.47263 * 59.99863 * 21 20 19 37 37 H 1.08997 * 109.46829 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.46862 * 299.99681 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 7 1.6513 2.0993 1.2552 14 6 2.4040 1.5464 2.3960 15 6 3.1297 2.7247 3.0791 16 6 2.2962 3.9546 2.6326 17 6 1.8980 3.5556 1.1897 18 1 2.7121 3.7717 0.4978 19 6 0.6264 4.2928 0.7649 20 8 -0.3750 4.1342 1.7719 21 6 -1.6098 4.7877 1.4715 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3635 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.8771 0.4812 -2.1123 28 1 1.7177 1.0754 3.0998 29 1 3.1328 0.8177 2.0412 30 1 3.1054 2.6157 4.1634 31 1 4.1572 2.8024 2.7239 32 1 1.4143 4.0777 3.2611 33 1 2.9040 4.8594 2.6337 34 1 0.8469 5.3524 0.6353 35 1 0.2640 3.8793 -0.1763 36 1 -2.0185 4.3841 0.5452 37 1 -2.3169 4.6194 2.2838 38 1 -1.4361 5.8576 1.3563 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696537156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:34 Heat of formation + Delta-G solvation = -62.148966 kcal Electronic energy + Delta-G solvation = -17267.917327 eV Core-core repulsion = 14723.653139 eV Total energy + Delta-G solvation = -2544.264188 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44428 -38.22728 -35.93726 -34.01246 -31.49569 -31.12842 -28.54861 -27.36563 -25.63447 -24.39636 -22.78582 -21.27436 -20.54163 -18.81404 -17.63216 -17.00642 -16.59579 -16.24714 -16.05402 -15.27686 -15.06885 -14.47706 -14.40677 -14.03733 -13.86494 -13.43467 -13.40321 -12.94534 -12.63166 -12.55724 -12.37394 -12.16254 -12.00041 -11.75117 -11.55288 -11.43420 -11.40732 -11.21835 -11.08224 -10.66807 -10.38794 -8.85058 -8.30493 -6.32569 1.28696 1.33619 1.43779 2.30589 3.03349 3.07745 3.33082 3.91429 3.94856 4.26503 4.38816 4.42270 4.45578 4.55582 4.57462 4.66401 4.68351 4.71238 4.76185 4.91830 4.96664 4.96863 5.07871 5.11229 5.14734 5.18676 5.28060 5.36014 5.48111 5.55228 5.59624 5.61221 6.20935 6.39158 6.45833 6.56472 6.77709 7.34938 8.85397 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.010386 C = 0.009069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.672238 B = 2695.198451 C = 3086.607159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 C 0.180 3.820 4 H 0.024 0.976 5 C -0.531 4.531 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.946 5.946 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.249 1.249 12 H -0.302 1.302 13 N -0.501 5.501 14 C 0.049 3.951 15 C -0.134 4.134 16 C -0.106 4.106 17 C 0.066 3.934 18 H 0.048 0.952 19 C 0.089 3.911 20 O -0.391 6.391 21 C 0.026 3.974 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.041 0.959 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.263 0.737 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.096 0.904 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.371 5.563 5.375 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.156 4.156 3 C 0.071 3.929 4 H 0.042 0.958 5 C -0.570 4.570 6 H 0.064 0.936 7 C -0.182 4.182 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.173 1.173 12 H -0.230 1.230 13 N -0.224 5.224 14 C -0.079 4.079 15 C -0.172 4.172 16 C -0.143 4.143 17 C -0.043 4.043 18 H 0.066 0.934 19 C 0.012 3.988 20 O -0.310 6.310 21 C -0.070 4.070 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.114 0.886 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.750 5.313 5.508 14.871 hybrid contribution 1.239 -0.302 -1.402 1.895 sum -11.511 5.011 4.106 13.209 Atomic orbital electron populations 1.21612 0.94550 1.00879 1.01872 1.21787 0.96546 0.97653 0.99584 1.19739 0.91617 0.91987 0.89552 0.95831 1.21969 0.92558 1.36929 1.05579 0.93602 1.25774 0.95643 0.96366 1.00380 1.70057 1.10665 1.47203 1.30767 0.85933 0.79632 0.79558 0.77770 1.19631 1.17269 1.22989 1.63731 1.53485 1.02161 1.03007 1.22651 0.95464 0.97186 0.92637 1.22693 0.98082 0.95574 1.00857 1.22543 0.99709 0.97138 0.94953 1.22585 0.94676 0.89211 0.97808 0.93411 1.22278 0.88101 0.98007 0.90402 1.87913 1.23189 1.75654 1.44240 1.22859 0.86017 0.96502 1.01627 0.92569 0.91454 0.93987 0.94976 0.92848 0.92787 0.91154 0.93949 0.89553 0.93986 0.89333 0.90823 0.91912 0.94541 0.94401 0.88595 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.80 71.98 0.71 -3.94 16 2 C -0.12 -5.07 4.87 30.59 0.15 -4.92 16 3 C 0.18 8.37 1.22 44.17 0.05 8.42 16 4 H 0.02 1.15 7.13 -2.39 -0.02 1.14 16 5 C -0.53 -29.42 6.83 25.60 0.17 -29.25 16 6 H 0.05 2.80 6.46 -2.91 -0.02 2.78 16 7 C 0.02 0.93 5.45 84.66 0.46 1.39 16 8 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 9 Si 0.94 45.44 24.41 68.60 1.67 47.12 16 10 H -0.27 -12.55 6.83 99.48 0.68 -11.87 16 11 H -0.25 -11.22 6.53 99.48 0.65 -10.57 16 12 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 13 N -0.50 -20.46 4.20 -839.98 -3.53 -23.98 16 14 C 0.05 1.93 5.33 86.65 0.46 2.39 16 15 C -0.13 -4.67 6.72 31.78 0.21 -4.45 16 16 C -0.11 -3.40 6.43 31.98 0.21 -3.20 16 17 C 0.07 2.48 2.61 45.39 0.12 2.59 16 18 H 0.05 2.10 7.10 -2.39 -0.02 2.08 16 19 C 0.09 2.83 5.91 71.98 0.43 3.25 16 20 O -0.39 -11.76 9.45 -148.98 -1.41 -13.17 16 21 C 0.03 0.56 11.01 113.37 1.25 1.81 16 22 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 2.34 7.75 -2.39 -0.02 2.33 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.03 1.45 3.22 -2.39 -0.01 1.45 16 26 H 0.05 2.31 7.05 -2.39 -0.02 2.29 16 27 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.04 1.96 5.66 -2.39 -0.01 1.94 16 30 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.04 1.65 7.73 -2.39 -0.02 1.63 16 32 H 0.09 2.70 7.05 -2.39 -0.02 2.68 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -63.53 287.53 2.18 -61.35 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.93 Total: 13.15 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 4.22 Total: -25.90 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -3.23 Total: -82.55 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.41 Total: -13.17 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.67 Total: 47.12 kcal Total: -63.53 2.18 -61.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696537156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.801 kcal (2) G-P(sol) polarization free energy of solvation -63.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds