Wall clock time and date at job start Sun Mar 29 2020 21:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47230 * 2 1 4 4 H 1.08992 * 109.47098 * 49.43322 * 3 2 1 5 5 C 1.50700 * 109.47031 * 169.43843 * 3 2 1 6 6 H 1.07998 * 119.99959 * 114.67606 * 5 3 2 7 7 C 1.37873 * 119.99888 * 294.66743 * 5 3 2 8 8 N 1.31515 * 120.00152 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00012 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47125 * 89.99800 * 9 7 5 11 11 H 1.48496 * 109.47414 * 209.99584 * 9 7 5 12 12 H 1.48503 * 109.47350 * 329.99740 * 9 7 5 13 13 N 1.46900 * 109.46733 * 289.43616 * 3 2 1 14 14 C 1.47846 * 111.00577 * 52.59767 * 13 3 2 15 15 C 1.54897 * 104.79944 * 146.36021 * 14 13 3 16 16 C 1.55137 * 101.65810 * 322.93540 * 15 14 13 17 17 C 1.47445 * 110.99886 * 173.44402 * 13 3 2 18 18 H 1.08995 * 109.89175 * 117.17406 * 17 13 3 19 19 C 1.52997 * 109.88981 * 356.14482 * 17 13 3 20 20 O 1.42906 * 109.47175 * 293.06271 * 19 17 13 21 21 C 1.42893 * 114.00111 * 179.97438 * 20 19 17 22 22 H 1.08994 * 109.46951 * 202.95056 * 1 2 3 23 23 H 1.08998 * 109.46591 * 322.95980 * 1 2 3 24 24 H 1.09007 * 109.46774 * 82.95036 * 1 2 3 25 25 H 1.08998 * 109.47222 * 239.99775 * 2 1 3 26 26 H 1.09004 * 109.46683 * 119.99494 * 2 1 3 27 27 H 0.96999 * 119.99821 * 180.02562 * 8 7 5 28 28 H 1.08998 * 110.37261 * 265.19411 * 14 13 3 29 29 H 1.09005 * 110.36903 * 27.42017 * 14 13 3 30 30 H 1.09005 * 110.98847 * 81.02398 * 15 14 13 31 31 H 1.08994 * 110.99375 * 204.80079 * 15 14 13 32 32 H 1.09009 * 110.70250 * 277.27480 * 16 15 14 33 33 H 1.08995 * 110.71504 * 154.03281 * 16 15 14 34 34 H 1.08998 * 109.47203 * 173.06388 * 19 17 13 35 35 H 1.08995 * 109.47328 * 53.06179 * 19 17 13 36 36 H 1.09004 * 109.47119 * 299.99576 * 21 20 19 37 37 H 1.09003 * 109.47541 * 60.00126 * 21 20 19 38 38 H 1.09008 * 109.47108 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5311 2.0078 0.7806 5 6 3.5244 1.4505 0.2604 6 1 4.2052 1.7911 -0.5056 7 6 4.0132 1.0230 1.4767 8 7 5.3085 1.0304 1.7042 9 14 2.8356 0.4334 2.8015 10 1 2.6182 -1.0284 2.6556 11 1 3.4138 0.7166 4.1396 12 1 1.5385 1.1430 2.6624 13 7 1.7688 2.0577 -1.3061 14 6 0.3449 1.9101 -1.6759 15 6 0.0063 3.1976 -2.4678 16 6 0.8301 4.2641 -1.6993 17 6 2.1042 3.4934 -1.2938 18 1 2.9041 3.6935 -2.0067 19 6 2.5419 3.9137 0.1107 20 8 1.4298 3.8226 1.0035 21 6 1.7329 4.1947 2.3494 22 1 -0.3633 -0.9463 0.4007 23 1 -0.3632 0.8203 0.6190 24 1 -0.3633 0.1261 -1.0200 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 5.6523 0.7294 2.5598 28 1 0.2053 1.0304 -2.3042 29 1 -0.2740 1.8389 -0.7815 30 1 0.3392 3.1183 -3.5027 31 1 -1.0602 3.4171 -2.4186 32 1 0.2895 4.6063 -0.8167 33 1 1.0777 5.1026 -2.3501 34 1 2.9048 4.9412 0.0860 35 1 3.3391 3.2550 0.4552 36 1 2.5131 3.5415 2.7401 37 1 2.0792 5.2280 2.3715 38 1 0.8372 4.0990 2.9633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696537160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:38 Heat of formation + Delta-G solvation = -8.659886 kcal Electronic energy + Delta-G solvation = -17958.237351 eV Core-core repulsion = 15416.292623 eV Total energy + Delta-G solvation = -2541.944728 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.44924 -36.36288 -34.30646 -32.24794 -30.63523 -28.82464 -27.00193 -25.93122 -24.28534 -22.38800 -20.62035 -20.40937 -18.58458 -17.08124 -15.91500 -15.42628 -14.95011 -14.75992 -14.40645 -13.95584 -13.06150 -12.85832 -12.59372 -12.45098 -12.04181 -11.93396 -11.77634 -11.48583 -11.18797 -10.92201 -10.79304 -10.44736 -10.24840 -10.08954 -10.02721 -9.79826 -9.44961 -9.29612 -9.09283 -8.91140 -8.30973 -7.01743 -6.10222 -3.98296 3.25449 3.35980 3.41514 4.39085 4.54628 4.93928 5.18114 5.30198 5.38937 5.57247 5.81800 5.89453 5.95568 5.98608 6.03497 6.08878 6.17186 6.17992 6.24034 6.29970 6.32748 6.45044 6.52900 6.64051 6.68514 6.83134 6.89034 6.94784 7.03265 7.28621 7.53427 7.73889 7.97336 8.05766 8.22555 8.72525 8.98106 9.52075 11.01367 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025791 B = 0.013783 C = 0.011773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.384112 B = 2030.953718 C = 2377.692230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.125 4.125 3 C 0.152 3.848 4 H 0.058 0.942 5 C -0.490 4.490 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.898 5.898 9 Si 0.868 3.132 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.256 1.256 13 N -0.509 5.509 14 C 0.032 3.968 15 C -0.132 4.132 16 C -0.137 4.137 17 C 0.093 3.907 18 H 0.082 0.918 19 C 0.002 3.998 20 O -0.384 6.384 21 C 0.035 3.965 22 H 0.032 0.968 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.263 0.737 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.021 0.979 35 H 0.142 0.858 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.231 4.569 -2.544 10.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.163 4.163 3 C 0.044 3.956 4 H 0.075 0.925 5 C -0.528 4.528 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.537 5.537 9 Si 0.698 3.302 10 H -0.206 1.206 11 H -0.224 1.224 12 H -0.180 1.180 13 N -0.234 5.234 14 C -0.096 4.096 15 C -0.170 4.170 16 C -0.176 4.176 17 C -0.016 4.016 18 H 0.100 0.900 19 C -0.074 4.074 20 O -0.303 6.303 21 C -0.062 4.062 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.158 0.842 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.948 4.206 -2.826 10.283 hybrid contribution -0.698 0.076 1.504 1.660 sum -9.646 4.282 -1.322 10.636 Atomic orbital electron populations 1.22520 0.98582 0.99720 1.01625 1.21919 0.92855 1.00418 1.01116 1.20549 0.97175 0.90406 0.87422 0.92543 1.20901 0.90346 1.41514 1.00018 0.90170 1.24897 0.94776 0.95488 0.98222 1.69892 1.11825 1.47749 1.24198 0.87103 0.82514 0.79660 0.80949 1.20557 1.22400 1.18005 1.63679 1.16367 1.11103 1.32207 1.23622 0.91380 0.96256 0.98343 1.22722 0.98830 0.96241 0.99256 1.22812 0.97348 0.97628 0.99794 1.22245 0.96353 0.88401 0.94607 0.90011 1.24266 0.92592 1.00202 0.90318 1.87766 1.36526 1.87803 1.18183 1.22569 1.00769 0.98050 0.84807 0.94855 0.93183 0.91710 0.92036 0.93094 0.92661 0.91474 0.92437 0.91733 0.92179 0.90766 0.92338 0.96102 0.84170 0.93867 0.95157 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 8.21 37.16 0.31 -2.79 16 2 C -0.13 -2.78 4.87 -26.73 -0.13 -2.91 16 3 C 0.15 3.53 0.69 -68.86 -0.05 3.48 16 4 H 0.06 1.38 3.28 -51.93 -0.17 1.21 16 5 C -0.49 -13.11 5.66 -34.44 -0.20 -13.30 16 6 H 0.08 2.37 7.94 -52.49 -0.42 1.95 16 7 C 0.07 1.88 5.44 -17.82 -0.10 1.78 16 8 N -0.90 -26.45 13.96 55.43 0.77 -25.68 16 9 Si 0.87 21.37 23.87 -169.99 -4.06 17.32 16 10 H -0.28 -6.85 6.84 56.52 0.39 -6.47 16 11 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.26 -6.07 6.39 56.52 0.36 -5.70 16 13 N -0.51 -10.74 5.02 -216.82 -1.09 -11.83 16 14 C 0.03 0.57 4.51 -2.30 -0.01 0.56 16 15 C -0.13 -2.03 7.08 -24.60 -0.17 -2.21 16 16 C -0.14 -2.26 6.36 -24.91 -0.16 -2.41 16 17 C 0.09 1.81 3.57 -66.72 -0.24 1.57 16 18 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 19 C 0.00 0.03 4.85 37.16 0.18 0.21 16 20 O -0.38 -7.84 6.73 -35.23 -0.24 -8.07 16 21 C 0.03 0.63 11.01 101.05 1.11 1.74 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.95 6.79 -51.93 -0.35 0.59 16 24 H 0.06 1.08 4.94 -51.93 -0.26 0.82 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.05 1.20 4.07 -51.93 -0.21 0.99 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.07 1.15 6.92 -51.93 -0.36 0.79 16 29 H 0.06 1.06 4.84 -51.93 -0.25 0.81 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.28 6.87 -51.92 -0.36 0.92 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.14 3.43 4.04 -51.93 -0.21 3.22 16 36 H 0.04 0.86 7.29 -51.93 -0.38 0.48 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 LS Contribution 270.74 15.07 4.08 4.08 Total: -1.00 -28.48 270.74 -5.94 -34.42 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.96 Total: 4.03 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 0.55 Total: -14.27 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.31 Total: -37.50 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.24 Total: -8.07 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.06 Total: 17.32 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.48 -5.94 -34.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696537160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.760 kcal (2) G-P(sol) polarization free energy of solvation -28.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds