Wall clock time and date at job start Sun Mar 29 2020 21:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47229 * 2 1 4 4 H 1.09007 * 109.46744 * 55.00311 * 3 2 1 5 5 C 1.50701 * 109.47324 * 174.99974 * 3 2 1 6 6 H 1.07996 * 119.99564 * 122.32583 * 5 3 2 7 7 C 1.37878 * 119.99929 * 302.33119 * 5 3 2 8 8 N 1.31513 * 119.99853 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00277 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.47138 * 89.99471 * 9 7 5 11 11 H 1.48496 * 109.47411 * 209.99927 * 9 7 5 12 12 H 1.48502 * 109.46809 * 330.00207 * 9 7 5 13 13 N 1.46894 * 109.47350 * 295.00489 * 3 2 1 14 14 C 1.47840 * 110.99942 * 279.83111 * 13 3 2 15 15 C 1.54907 * 104.79751 * 213.63560 * 14 13 3 16 16 C 1.55141 * 101.65281 * 37.07249 * 15 14 13 17 17 C 1.47448 * 111.00034 * 158.98662 * 13 3 2 18 18 H 1.08992 * 109.88917 * 242.82372 * 17 13 3 19 19 C 1.52993 * 109.88690 * 3.85415 * 17 13 3 20 20 O 1.42906 * 109.47316 * 68.61757 * 19 17 13 21 21 C 1.42901 * 113.99471 * 180.02562 * 20 19 17 22 22 H 1.08997 * 109.47274 * 59.99768 * 1 2 3 23 23 H 1.09002 * 109.47135 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46829 * 299.99333 * 1 2 3 25 25 H 1.08998 * 109.47361 * 120.00778 * 2 1 3 26 26 H 1.08999 * 109.46853 * 240.00194 * 2 1 3 27 27 H 0.96998 * 120.00162 * 180.02562 * 8 7 5 28 28 H 1.09004 * 110.37519 * 332.46363 * 14 13 3 29 29 H 1.09004 * 110.37577 * 94.80919 * 14 13 3 30 30 H 1.09000 * 110.99104 * 278.97864 * 15 14 13 31 31 H 1.09005 * 111.02275 * 155.17506 * 15 14 13 32 32 H 1.09004 * 110.70445 * 205.96719 * 16 15 14 33 33 H 1.08996 * 110.85864 * 82.79841 * 16 15 14 34 34 H 1.09003 * 109.46671 * 188.61292 * 19 17 13 35 35 H 1.08999 * 109.47295 * 308.60934 * 19 17 13 36 36 H 1.08993 * 109.47260 * 299.99188 * 21 20 19 37 37 H 1.08994 * 109.47534 * 59.99758 * 21 20 19 38 38 H 1.09007 * 109.46418 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1456 1.9219 -0.6337 7 6 4.1453 0.8361 1.2042 8 7 5.4561 0.8372 1.3120 9 14 3.1012 0.0104 2.5147 10 1 2.8840 -1.4128 2.1506 11 1 3.7987 0.0857 3.8235 12 1 1.7906 0.7021 2.6117 13 7 1.6514 2.0993 -1.2551 14 6 2.5678 1.7269 -2.3538 15 6 2.6495 2.9904 -3.2463 16 6 2.6174 4.1243 -2.1878 17 6 1.6644 3.5665 -1.1097 18 1 0.6600 3.9627 -1.2583 19 6 2.1733 3.9471 0.2820 20 8 3.5612 3.6231 0.3868 21 6 4.1377 3.9399 1.6554 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 5.8806 0.4091 2.0718 28 1 3.5525 1.4773 -1.9585 29 1 2.1613 0.8885 -2.9195 30 1 1.7893 3.0539 -3.9128 31 1 3.5813 3.0103 -3.8116 32 1 2.2170 5.0422 -2.6184 33 1 3.6105 4.2960 -1.7728 34 1 2.0372 5.0172 0.4384 35 1 1.6133 3.3955 1.0371 36 1 4.0424 5.0097 1.8408 37 1 3.6184 3.3877 2.4386 38 1 5.1921 3.6635 1.6544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696537161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:40 Heat of formation + Delta-G solvation = -0.307829 kcal Electronic energy + Delta-G solvation = -18077.863410 eV Core-core repulsion = 15536.280855 eV Total energy + Delta-G solvation = -2541.582555 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.28094 -35.86910 -34.26683 -31.76654 -30.06079 -29.41622 -26.55592 -25.55411 -23.80461 -22.63339 -21.23622 -20.14623 -18.29417 -16.58732 -15.94200 -15.25359 -14.99026 -14.57510 -14.11175 -13.46842 -13.29631 -12.83543 -12.59773 -12.40114 -11.90861 -11.57942 -11.53006 -11.13365 -10.86268 -10.81076 -10.58247 -10.54542 -10.23117 -10.07697 -9.93439 -9.78672 -9.45265 -9.26791 -8.76058 -8.55849 -8.06790 -7.05570 -5.89314 -3.68988 3.31842 3.43703 3.44129 4.51237 4.86242 4.99299 5.34124 5.49682 5.59984 5.67347 5.99484 5.99588 6.06735 6.09742 6.12849 6.22026 6.29566 6.31520 6.37192 6.52125 6.55941 6.58684 6.72652 6.78005 6.82349 6.90450 6.96311 7.03241 7.17484 7.23434 7.32937 7.71421 8.16390 8.24961 8.36659 8.67283 9.16191 9.70969 11.23021 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.015414 C = 0.012035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.179027 B = 1816.138575 C = 2326.013641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C 0.159 3.841 4 H 0.042 0.958 5 C -0.463 4.463 6 H 0.099 0.901 7 C 0.063 3.937 8 N -0.904 5.904 9 Si 0.871 3.129 10 H -0.284 1.284 11 H -0.305 1.305 12 H -0.272 1.272 13 N -0.514 5.514 14 C 0.032 3.968 15 C -0.128 4.128 16 C -0.130 4.130 17 C 0.082 3.918 18 H 0.074 0.926 19 C 0.036 3.964 20 O -0.316 6.316 21 C 0.047 3.953 22 H 0.062 0.938 23 H 0.031 0.969 24 H 0.037 0.963 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.257 0.743 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.020 0.980 35 H 0.053 0.947 36 H 0.005 0.995 37 H 0.024 0.976 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.333 4.702 -3.392 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.052 3.948 4 H 0.060 0.940 5 C -0.501 4.501 6 H 0.116 0.884 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.212 1.212 11 H -0.233 1.233 12 H -0.198 1.198 13 N -0.238 5.238 14 C -0.095 4.095 15 C -0.166 4.166 16 C -0.168 4.168 17 C -0.026 4.026 18 H 0.092 0.908 19 C -0.042 4.042 20 O -0.233 6.233 21 C -0.049 4.049 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.043 0.957 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.609 4.396 -3.546 8.693 hybrid contribution 0.111 -0.157 1.492 1.504 sum -6.499 4.238 -2.054 8.026 Atomic orbital electron populations 1.21724 0.97715 0.99196 1.01351 1.21866 0.93797 0.99663 1.00210 1.20146 0.95719 0.90299 0.88673 0.94031 1.21477 0.89842 1.30401 1.08421 0.88403 1.24771 0.94456 0.96966 0.97442 1.69881 1.08170 1.45903 1.30584 0.87158 0.80627 0.80377 0.81495 1.21157 1.23329 1.19766 1.63931 1.49058 1.04040 1.06786 1.23260 0.99253 0.95602 0.91434 1.22635 1.00315 0.96306 0.97338 1.22723 1.01171 0.97101 0.95814 1.22296 0.97047 0.90257 0.93043 0.90791 1.22962 0.87185 0.96106 0.97929 1.88886 1.20666 1.81380 1.32390 1.22382 0.99792 0.94788 0.87973 0.91924 0.94977 0.94349 0.93895 0.92534 0.93335 0.88963 0.92625 0.92479 0.92078 0.92876 0.89979 0.96157 0.92962 0.97647 0.95700 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.80 37.16 0.36 -2.31 16 2 C -0.12 -2.59 4.93 -26.73 -0.13 -2.72 16 3 C 0.16 3.60 0.85 -68.87 -0.06 3.55 16 4 H 0.04 1.00 4.33 -51.93 -0.22 0.78 16 5 C -0.46 -11.79 4.25 -34.44 -0.15 -11.94 16 6 H 0.10 2.75 5.09 -52.49 -0.27 2.48 16 7 C 0.06 1.69 4.51 -17.82 -0.08 1.61 16 8 N -0.90 -26.04 13.96 55.43 0.77 -25.27 16 9 Si 0.87 21.76 24.33 -169.99 -4.14 17.63 16 10 H -0.28 -7.11 6.84 56.52 0.39 -6.72 16 11 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 12 H -0.27 -6.60 6.55 56.52 0.37 -6.23 16 13 N -0.51 -10.39 4.51 -216.82 -0.98 -11.37 16 14 C 0.03 0.63 5.90 -2.30 -0.01 0.61 16 15 C -0.13 -2.12 7.08 -24.59 -0.17 -2.30 16 16 C -0.13 -2.21 6.35 -24.90 -0.16 -2.37 16 17 C 0.08 1.52 3.82 -66.72 -0.25 1.26 16 18 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 19 C 0.04 0.70 4.91 37.15 0.18 0.88 16 20 O -0.32 -6.99 4.60 -35.23 -0.16 -7.15 16 21 C 0.05 0.99 9.76 101.05 0.99 1.98 16 22 H 0.06 1.13 7.75 -51.93 -0.40 0.73 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 1.02 2.90 -51.93 -0.15 0.87 16 26 H 0.06 1.24 7.80 -51.93 -0.41 0.84 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.09 2.12 4.78 -51.93 -0.25 1.87 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.57 6.80 -51.93 -0.35 1.21 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 1.09 5.61 -51.93 -0.29 0.79 16 36 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16 37 H 0.02 0.53 8.12 -51.93 -0.42 0.11 16 38 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 272.96 15.07 4.11 4.11 Total: -1.00 -27.32 272.96 -6.05 -33.37 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.17 Total: 0.43 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 0.51 Total: -11.75 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.20 Total: -36.64 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.16 Total: -7.15 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.32 -6.05 -33.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696537161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.061 kcal (2) G-P(sol) polarization free energy of solvation -27.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds