Wall clock time and date at job start Sun Mar 29 2020 21:47:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52994 * 109.47229 * 2 1
4 4 H 1.09007 * 109.46744 * 55.00311 * 3 2 1
5 5 C 1.50701 * 109.47324 * 174.99974 * 3 2 1
6 6 H 1.07996 * 119.99564 * 122.32583 * 5 3 2
7 7 C 1.37878 * 119.99929 * 302.33119 * 5 3 2
8 8 N 1.31513 * 119.99853 * 179.97438 * 7 5 3
9 9 Si 1.86800 * 120.00277 * 359.97438 * 7 5 3
10 10 H 1.48505 * 109.47138 * 89.99471 * 9 7 5
11 11 H 1.48496 * 109.47411 * 209.99927 * 9 7 5
12 12 H 1.48502 * 109.46809 * 330.00207 * 9 7 5
13 13 N 1.46894 * 109.47350 * 295.00489 * 3 2 1
14 14 C 1.47840 * 110.99942 * 279.83111 * 13 3 2
15 15 C 1.54907 * 104.79751 * 213.63560 * 14 13 3
16 16 C 1.55141 * 101.65281 * 37.07249 * 15 14 13
17 17 C 1.47448 * 111.00034 * 158.98662 * 13 3 2
18 18 H 1.08992 * 109.88917 * 242.82372 * 17 13 3
19 19 C 1.52993 * 109.88690 * 3.85415 * 17 13 3
20 20 O 1.42906 * 109.47316 * 68.61757 * 19 17 13
21 21 C 1.42901 * 113.99471 * 180.02562 * 20 19 17
22 22 H 1.08997 * 109.47274 * 59.99768 * 1 2 3
23 23 H 1.09002 * 109.47135 * 179.97438 * 1 2 3
24 24 H 1.09005 * 109.46829 * 299.99333 * 1 2 3
25 25 H 1.08998 * 109.47361 * 120.00778 * 2 1 3
26 26 H 1.08999 * 109.46853 * 240.00194 * 2 1 3
27 27 H 0.96998 * 120.00162 * 180.02562 * 8 7 5
28 28 H 1.09004 * 110.37519 * 332.46363 * 14 13 3
29 29 H 1.09004 * 110.37577 * 94.80919 * 14 13 3
30 30 H 1.09000 * 110.99104 * 278.97864 * 15 14 13
31 31 H 1.09005 * 111.02275 * 155.17506 * 15 14 13
32 32 H 1.09004 * 110.70445 * 205.96719 * 16 15 14
33 33 H 1.08996 * 110.85864 * 82.79841 * 16 15 14
34 34 H 1.09003 * 109.46671 * 188.61292 * 19 17 13
35 35 H 1.08999 * 109.47295 * 308.60934 * 19 17 13
36 36 H 1.08993 * 109.47260 * 299.99188 * 21 20 19
37 37 H 1.08994 * 109.47534 * 59.99758 * 21 20 19
38 38 H 1.09007 * 109.46418 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6054 1.9814 0.8419
5 6 3.5420 1.4443 0.1238
6 1 4.1456 1.9219 -0.6337
7 6 4.1453 0.8361 1.2042
8 7 5.4561 0.8372 1.3120
9 14 3.1012 0.0104 2.5147
10 1 2.8840 -1.4128 2.1506
11 1 3.7987 0.0857 3.8235
12 1 1.7906 0.7021 2.6117
13 7 1.6514 2.0993 -1.2551
14 6 2.5678 1.7269 -2.3538
15 6 2.6495 2.9904 -3.2463
16 6 2.6174 4.1243 -2.1878
17 6 1.6644 3.5665 -1.1097
18 1 0.6600 3.9627 -1.2583
19 6 2.1733 3.9471 0.2820
20 8 3.5612 3.6231 0.3868
21 6 4.1377 3.9399 1.6554
22 1 -0.3633 0.5138 -0.8899
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3633 0.5138 0.8901
25 1 1.8934 -0.5139 0.8899
26 1 1.8933 -0.5138 -0.8900
27 1 5.8806 0.4091 2.0718
28 1 3.5525 1.4773 -1.9585
29 1 2.1613 0.8885 -2.9195
30 1 1.7893 3.0539 -3.9128
31 1 3.5813 3.0103 -3.8116
32 1 2.2170 5.0422 -2.6184
33 1 3.6105 4.2960 -1.7728
34 1 2.0372 5.0172 0.4384
35 1 1.6133 3.3955 1.0371
36 1 4.0424 5.0097 1.8408
37 1 3.6184 3.3877 2.4386
38 1 5.1921 3.6635 1.6544
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000696537161.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:47:40
Heat of formation + Delta-G solvation = -0.307829 kcal
Electronic energy + Delta-G solvation = -18077.863410 eV
Core-core repulsion = 15536.280855 eV
Total energy + Delta-G solvation = -2541.582555 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.28094 -35.86910 -34.26683 -31.76654 -30.06079 -29.41622 -26.55592 -25.55411
-23.80461 -22.63339 -21.23622 -20.14623 -18.29417 -16.58732 -15.94200 -15.25359
-14.99026 -14.57510 -14.11175 -13.46842 -13.29631 -12.83543 -12.59773 -12.40114
-11.90861 -11.57942 -11.53006 -11.13365 -10.86268 -10.81076 -10.58247 -10.54542
-10.23117 -10.07697 -9.93439 -9.78672 -9.45265 -9.26791 -8.76058 -8.55849
-8.06790 -7.05570 -5.89314 -3.68988 3.31842 3.43703 3.44129 4.51237
4.86242 4.99299 5.34124 5.49682 5.59984 5.67347 5.99484 5.99588
6.06735 6.09742 6.12849 6.22026 6.29566 6.31520 6.37192 6.52125
6.55941 6.58684 6.72652 6.78005 6.82349 6.90450 6.96311 7.03241
7.17484 7.23434 7.32937 7.71421 8.16390 8.24961 8.36659 8.67283
9.16191 9.70969 11.23021
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.023943 B = 0.015414 C = 0.012035
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1169.179027 B = 1816.138575 C = 2326.013641
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.118 4.118
3 C 0.159 3.841
4 H 0.042 0.958
5 C -0.463 4.463
6 H 0.099 0.901
7 C 0.063 3.937
8 N -0.904 5.904
9 Si 0.871 3.129
10 H -0.284 1.284
11 H -0.305 1.305
12 H -0.272 1.272
13 N -0.514 5.514
14 C 0.032 3.968
15 C -0.128 4.128
16 C -0.130 4.130
17 C 0.082 3.918
18 H 0.074 0.926
19 C 0.036 3.964
20 O -0.316 6.316
21 C 0.047 3.953
22 H 0.062 0.938
23 H 0.031 0.969
24 H 0.037 0.963
25 H 0.043 0.957
26 H 0.056 0.944
27 H 0.257 0.743
28 H 0.093 0.907
29 H 0.055 0.945
30 H 0.056 0.944
31 H 0.060 0.940
32 H 0.052 0.948
33 H 0.082 0.918
34 H 0.020 0.980
35 H 0.053 0.947
36 H 0.005 0.995
37 H 0.024 0.976
38 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.333 4.702 -3.392 8.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.155 4.155
3 C 0.052 3.948
4 H 0.060 0.940
5 C -0.501 4.501
6 H 0.116 0.884
7 C -0.136 4.136
8 N -0.545 5.545
9 Si 0.703 3.297
10 H -0.212 1.212
11 H -0.233 1.233
12 H -0.198 1.198
13 N -0.238 5.238
14 C -0.095 4.095
15 C -0.166 4.166
16 C -0.168 4.168
17 C -0.026 4.026
18 H 0.092 0.908
19 C -0.042 4.042
20 O -0.233 6.233
21 C -0.049 4.049
22 H 0.081 0.919
23 H 0.050 0.950
24 H 0.057 0.943
25 H 0.061 0.939
26 H 0.075 0.925
27 H 0.067 0.933
28 H 0.110 0.890
29 H 0.074 0.926
30 H 0.075 0.925
31 H 0.079 0.921
32 H 0.071 0.929
33 H 0.100 0.900
34 H 0.038 0.962
35 H 0.070 0.930
36 H 0.024 0.976
37 H 0.043 0.957
38 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -6.609 4.396 -3.546 8.693
hybrid contribution 0.111 -0.157 1.492 1.504
sum -6.499 4.238 -2.054 8.026
Atomic orbital electron populations
1.21724 0.97715 0.99196 1.01351 1.21866 0.93797 0.99663 1.00210
1.20146 0.95719 0.90299 0.88673 0.94031 1.21477 0.89842 1.30401
1.08421 0.88403 1.24771 0.94456 0.96966 0.97442 1.69881 1.08170
1.45903 1.30584 0.87158 0.80627 0.80377 0.81495 1.21157 1.23329
1.19766 1.63931 1.49058 1.04040 1.06786 1.23260 0.99253 0.95602
0.91434 1.22635 1.00315 0.96306 0.97338 1.22723 1.01171 0.97101
0.95814 1.22296 0.97047 0.90257 0.93043 0.90791 1.22962 0.87185
0.96106 0.97929 1.88886 1.20666 1.81380 1.32390 1.22382 0.99792
0.94788 0.87973 0.91924 0.94977 0.94349 0.93895 0.92534 0.93335
0.88963 0.92625 0.92479 0.92078 0.92876 0.89979 0.96157 0.92962
0.97647 0.95700 0.89859
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.68 9.80 37.16 0.36 -2.31 16
2 C -0.12 -2.59 4.93 -26.73 -0.13 -2.72 16
3 C 0.16 3.60 0.85 -68.87 -0.06 3.55 16
4 H 0.04 1.00 4.33 -51.93 -0.22 0.78 16
5 C -0.46 -11.79 4.25 -34.44 -0.15 -11.94 16
6 H 0.10 2.75 5.09 -52.49 -0.27 2.48 16
7 C 0.06 1.69 4.51 -17.82 -0.08 1.61 16
8 N -0.90 -26.04 13.96 55.43 0.77 -25.27 16
9 Si 0.87 21.76 24.33 -169.99 -4.14 17.63 16
10 H -0.28 -7.11 6.84 56.52 0.39 -6.72 16
11 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16
12 H -0.27 -6.60 6.55 56.52 0.37 -6.23 16
13 N -0.51 -10.39 4.51 -216.82 -0.98 -11.37 16
14 C 0.03 0.63 5.90 -2.30 -0.01 0.61 16
15 C -0.13 -2.12 7.08 -24.59 -0.17 -2.30 16
16 C -0.13 -2.21 6.35 -24.90 -0.16 -2.37 16
17 C 0.08 1.52 3.82 -66.72 -0.25 1.26 16
18 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16
19 C 0.04 0.70 4.91 37.15 0.18 0.88 16
20 O -0.32 -6.99 4.60 -35.23 -0.16 -7.15 16
21 C 0.05 0.99 9.76 101.05 0.99 1.98 16
22 H 0.06 1.13 7.75 -51.93 -0.40 0.73 16
23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16
24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16
25 H 0.04 1.02 2.90 -51.93 -0.15 0.87 16
26 H 0.06 1.24 7.80 -51.93 -0.41 0.84 16
27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16
28 H 0.09 2.12 4.78 -51.93 -0.25 1.87 16
29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16
30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
33 H 0.08 1.57 6.80 -51.93 -0.35 1.21 16
34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
35 H 0.05 1.09 5.61 -51.93 -0.29 0.79 16
36 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16
37 H 0.02 0.53 8.12 -51.93 -0.42 0.11 16
38 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16
LS Contribution 272.96 15.07 4.11 4.11
Total: -1.00 -27.32 272.96 -6.05 -33.37
By element:
Atomic # 1 Polarization: 6.61 SS G_CDS: -6.17 Total: 0.43 kcal
Atomic # 6 Polarization: -12.26 SS G_CDS: 0.51 Total: -11.75 kcal
Atomic # 7 Polarization: -36.43 SS G_CDS: -0.20 Total: -36.64 kcal
Atomic # 8 Polarization: -6.99 SS G_CDS: -0.16 Total: -7.15 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -4.14 Total: 17.63 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -27.32 -6.05 -33.37 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000696537161.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.061 kcal
(2) G-P(sol) polarization free energy of solvation -27.321 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.740 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.369 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.308 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds