Wall clock time and date at job start Sun Mar 29 2020 21:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47229 * 2 1 4 4 H 1.09007 * 109.46744 * 55.00311 * 3 2 1 5 5 C 1.50701 * 109.47324 * 174.99974 * 3 2 1 6 6 H 1.07996 * 119.99564 * 122.32583 * 5 3 2 7 7 C 1.37878 * 119.99929 * 302.33119 * 5 3 2 8 8 N 1.31513 * 119.99853 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00277 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.47138 * 89.99471 * 9 7 5 11 11 H 1.48496 * 109.47411 * 209.99927 * 9 7 5 12 12 H 1.48502 * 109.46809 * 330.00207 * 9 7 5 13 13 N 1.46894 * 109.47350 * 295.00489 * 3 2 1 14 14 C 1.47840 * 110.99942 * 279.83111 * 13 3 2 15 15 C 1.54907 * 104.79751 * 213.63560 * 14 13 3 16 16 C 1.55141 * 101.65281 * 37.07249 * 15 14 13 17 17 C 1.47448 * 111.00034 * 158.98662 * 13 3 2 18 18 H 1.08992 * 109.88917 * 242.82372 * 17 13 3 19 19 C 1.52993 * 109.88690 * 3.85415 * 17 13 3 20 20 O 1.42906 * 109.47316 * 68.61757 * 19 17 13 21 21 C 1.42901 * 113.99471 * 180.02562 * 20 19 17 22 22 H 1.08997 * 109.47274 * 59.99768 * 1 2 3 23 23 H 1.09002 * 109.47135 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46829 * 299.99333 * 1 2 3 25 25 H 1.08998 * 109.47361 * 120.00778 * 2 1 3 26 26 H 1.08999 * 109.46853 * 240.00194 * 2 1 3 27 27 H 0.96998 * 120.00162 * 180.02562 * 8 7 5 28 28 H 1.09004 * 110.37519 * 332.46363 * 14 13 3 29 29 H 1.09004 * 110.37577 * 94.80919 * 14 13 3 30 30 H 1.09000 * 110.99104 * 278.97864 * 15 14 13 31 31 H 1.09005 * 111.02275 * 155.17506 * 15 14 13 32 32 H 1.09004 * 110.70445 * 205.96719 * 16 15 14 33 33 H 1.08996 * 110.85864 * 82.79841 * 16 15 14 34 34 H 1.09003 * 109.46671 * 188.61292 * 19 17 13 35 35 H 1.08999 * 109.47295 * 308.60934 * 19 17 13 36 36 H 1.08993 * 109.47260 * 299.99188 * 21 20 19 37 37 H 1.08994 * 109.47534 * 59.99758 * 21 20 19 38 38 H 1.09007 * 109.46418 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1456 1.9219 -0.6337 7 6 4.1453 0.8361 1.2042 8 7 5.4561 0.8372 1.3120 9 14 3.1012 0.0104 2.5147 10 1 2.8840 -1.4128 2.1506 11 1 3.7987 0.0857 3.8235 12 1 1.7906 0.7021 2.6117 13 7 1.6514 2.0993 -1.2551 14 6 2.5678 1.7269 -2.3538 15 6 2.6495 2.9904 -3.2463 16 6 2.6174 4.1243 -2.1878 17 6 1.6644 3.5665 -1.1097 18 1 0.6600 3.9627 -1.2583 19 6 2.1733 3.9471 0.2820 20 8 3.5612 3.6231 0.3868 21 6 4.1377 3.9399 1.6554 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 5.8806 0.4091 2.0718 28 1 3.5525 1.4773 -1.9585 29 1 2.1613 0.8885 -2.9195 30 1 1.7893 3.0539 -3.9128 31 1 3.5813 3.0103 -3.8116 32 1 2.2170 5.0422 -2.6184 33 1 3.6105 4.2960 -1.7728 34 1 2.0372 5.0172 0.4384 35 1 1.6133 3.3955 1.0371 36 1 4.0424 5.0097 1.8408 37 1 3.6184 3.3877 2.4386 38 1 5.1921 3.6635 1.6544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696537161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:40 Heat of formation + Delta-G solvation = -18.455494 kcal Electronic energy + Delta-G solvation = -18078.650352 eV Core-core repulsion = 15536.280855 eV Total energy + Delta-G solvation = -2542.369497 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89281 -37.54445 -35.96593 -33.74645 -31.57829 -30.98819 -28.38204 -27.22262 -25.36648 -24.43543 -22.83392 -21.69270 -20.02099 -18.43477 -17.61654 -16.92606 -16.65137 -16.34564 -15.79181 -15.16282 -14.94075 -14.62555 -14.24045 -14.09131 -13.52202 -13.32799 -13.13190 -12.76817 -12.57437 -12.50677 -12.25220 -12.20591 -11.73221 -11.68463 -11.51489 -11.42953 -11.19606 -11.08028 -10.58800 -10.49521 -9.91802 -8.74662 -7.99596 -5.77932 1.30253 1.37439 1.42642 2.45681 3.15476 3.38895 3.53366 4.04388 4.08896 4.22602 4.42017 4.48052 4.50015 4.55627 4.59549 4.68360 4.72869 4.74747 4.90621 4.98807 5.07057 5.13455 5.16685 5.18972 5.24211 5.25902 5.35199 5.45598 5.54216 5.62583 5.68630 5.78655 6.41807 6.50751 6.67018 6.75017 7.08128 7.62967 9.15683 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.015414 C = 0.012035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.179027 B = 1816.138575 C = 2326.013641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.121 4.121 3 C 0.164 3.836 4 H 0.037 0.963 5 C -0.431 4.431 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.947 5.947 9 Si 0.911 3.089 10 H -0.286 1.286 11 H -0.316 1.316 12 H -0.259 1.259 13 N -0.510 5.510 14 C 0.031 3.969 15 C -0.117 4.117 16 C -0.124 4.124 17 C 0.075 3.925 18 H 0.103 0.897 19 C 0.033 3.967 20 O -0.341 6.341 21 C 0.055 3.945 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.040 0.960 25 H 0.025 0.975 26 H 0.050 0.950 27 H 0.251 0.749 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.011 0.989 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.815 5.818 -4.461 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.159 4.159 3 C 0.056 3.944 4 H 0.054 0.946 5 C -0.470 4.470 6 H 0.087 0.913 7 C -0.177 4.177 8 N -0.592 5.592 9 Si 0.744 3.256 10 H -0.214 1.214 11 H -0.245 1.245 12 H -0.184 1.184 13 N -0.234 5.234 14 C -0.097 4.097 15 C -0.155 4.155 16 C -0.163 4.163 17 C -0.033 4.033 18 H 0.121 0.879 19 C -0.044 4.044 20 O -0.258 6.258 21 C -0.042 4.042 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.030 0.970 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.125 5.520 -4.626 11.625 hybrid contribution 0.866 -0.429 1.737 1.988 sum -8.259 5.090 -2.890 10.122 Atomic orbital electron populations 1.21627 0.94748 1.00749 1.01895 1.21831 0.96469 0.98570 0.99044 1.20006 0.93381 0.91187 0.89873 0.94575 1.21567 0.91376 1.27595 1.06454 0.91319 1.25197 0.94867 0.98398 0.99219 1.70003 1.09609 1.48286 1.31302 0.86485 0.79990 0.79728 0.79411 1.21353 1.24530 1.18376 1.63966 1.48543 1.05345 1.05510 1.23181 0.96913 0.97661 0.91936 1.22599 1.01825 0.94085 0.97038 1.22663 0.99596 0.98587 0.95416 1.22551 0.98801 0.89113 0.92821 0.87917 1.23060 0.85338 0.97679 0.98338 1.88770 1.22280 1.82254 1.32541 1.22249 0.98091 0.96651 0.87161 0.90969 0.93008 0.94125 0.95664 0.93124 0.93996 0.93032 0.91889 0.89926 0.91435 0.89593 0.92628 0.93297 0.94315 0.94123 0.97010 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.80 71.98 0.71 -3.89 16 2 C -0.12 -5.17 4.93 30.59 0.15 -5.02 16 3 C 0.16 7.25 0.85 44.17 0.04 7.29 16 4 H 0.04 1.69 4.33 -2.38 -0.01 1.68 16 5 C -0.43 -22.30 4.25 25.60 0.11 -22.19 16 6 H 0.07 3.99 5.09 -2.91 -0.01 3.98 16 7 C 0.02 0.97 4.51 84.66 0.38 1.35 16 8 N -0.95 -56.76 13.96 21.45 0.30 -56.47 16 9 Si 0.91 45.40 24.33 68.60 1.67 47.07 16 10 H -0.29 -14.16 6.84 99.48 0.68 -13.48 16 11 H -0.32 -16.17 7.11 99.48 0.71 -15.46 16 12 H -0.26 -12.17 6.55 99.48 0.65 -11.51 16 13 N -0.51 -19.52 4.51 -839.90 -3.79 -23.30 16 14 C 0.03 1.17 5.90 86.77 0.51 1.68 16 15 C -0.12 -3.56 7.08 31.98 0.23 -3.33 16 16 C -0.12 -3.86 6.35 31.78 0.20 -3.66 16 17 C 0.08 2.54 3.82 45.26 0.17 2.72 16 18 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 19 C 0.03 1.21 4.91 71.98 0.35 1.57 16 20 O -0.34 -14.98 4.60 -148.98 -0.69 -15.67 16 21 C 0.06 2.32 9.76 113.37 1.11 3.43 16 22 H 0.07 2.36 7.75 -2.39 -0.02 2.34 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.03 1.17 2.90 -2.39 -0.01 1.16 16 26 H 0.05 2.18 7.80 -2.39 -0.02 2.16 16 27 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.05 2.41 4.78 -2.39 -0.01 2.39 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 2.04 6.80 -2.39 -0.02 2.02 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.04 1.54 5.61 -2.39 -0.01 1.52 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.01 0.50 8.12 -2.39 -0.02 0.48 16 38 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 Total: -1.00 -59.79 272.96 2.40 -57.40 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.94 Total: 11.02 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 3.96 Total: -20.06 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.49 Total: -79.77 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.69 Total: -15.67 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.67 Total: 47.07 kcal Total: -59.79 2.40 -57.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696537161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.942 kcal (2) G-P(sol) polarization free energy of solvation -59.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds