Wall clock time and date at job start Sun Mar 29 2020 21:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 H 1.08993 * 110.54502 * 52.38251 * 3 2 1 5 5 C 1.54103 * 110.48529 * 289.76240 * 3 2 1 6 6 O 1.43745 * 107.29640 * 243.35359 * 5 3 2 7 7 C 1.44379 * 106.97456 * 333.48986 * 6 5 3 8 8 C 1.54812 * 110.48763 * 174.99940 * 3 2 1 9 9 H 1.09004 * 110.93856 * 21.34449 * 8 3 2 10 10 N 1.46899 * 110.91081 * 257.75277 * 8 3 2 11 11 C 1.46895 * 111.00175 * 160.84104 * 10 8 3 12 12 C 1.53005 * 109.47064 * 180.02562 * 11 10 8 13 13 C 1.52992 * 109.47274 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47257 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47163 * 59.99902 * 18 16 14 20 20 H 1.48495 * 109.47159 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47290 * 299.99897 * 18 16 14 22 22 H 1.08998 * 109.46571 * 60.00291 * 1 2 3 23 23 H 1.08996 * 109.46742 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47049 * 300.00445 * 1 2 3 25 25 H 1.08997 * 109.47238 * 240.00075 * 2 1 3 26 26 H 1.08999 * 109.47240 * 119.99370 * 2 1 3 27 27 H 1.09001 * 109.87153 * 123.93316 * 5 3 2 28 28 H 1.08996 * 109.88097 * 2.78475 * 5 3 2 29 29 H 1.09003 * 110.62173 * 281.55656 * 7 6 5 30 30 H 1.09003 * 110.75222 * 158.62486 * 7 6 5 31 31 H 1.00902 * 110.99614 * 36.88800 * 10 8 3 32 32 H 1.08999 * 109.47537 * 60.00564 * 11 10 8 33 33 H 1.09000 * 109.47104 * 299.99693 * 11 10 8 34 34 H 1.09004 * 109.47166 * 59.99485 * 12 11 10 35 35 H 1.09005 * 109.46988 * 299.99873 * 12 11 10 36 36 H 1.09004 * 109.47330 * 59.99726 * 13 12 11 37 37 H 1.08997 * 109.47279 * 300.00213 * 13 12 11 38 38 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 2.0108 0.8084 5 6 1.7596 2.1137 -1.3586 6 8 3.0311 2.4344 -1.9474 7 6 3.9680 2.6021 -0.8618 8 6 3.5827 1.4718 0.1264 9 1 4.0169 0.5208 -0.1820 10 7 3.9901 1.8116 1.4962 11 6 5.3801 1.4084 1.7474 12 6 5.7671 1.7773 3.1810 13 6 7.2146 1.3567 3.4428 14 6 7.5959 1.7206 4.8547 15 1 6.8778 2.2039 5.5005 16 6 8.8620 1.4375 5.3216 17 7 9.7351 0.8449 4.5366 18 14 9.3344 1.8879 7.0718 19 1 8.4359 1.1861 8.0233 20 1 10.7394 1.4798 7.3259 21 1 9.2033 3.3554 7.2579 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.1800 3.0247 -1.2091 28 1 1.2141 1.4269 -2.0057 29 1 3.8436 3.5791 -0.3948 30 1 4.9922 2.4731 -1.2120 31 1 3.3658 1.3978 2.1723 32 1 6.0398 1.9232 1.0488 33 1 5.4762 0.3312 1.6113 34 1 5.1074 1.2622 3.8794 35 1 5.6709 2.8545 3.3176 36 1 7.8745 1.8715 2.7445 37 1 7.3104 0.2796 3.3064 38 1 10.6259 0.6461 4.8650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699849270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:52 Heat of formation + Delta-G solvation = -74.822978 kcal Electronic energy + Delta-G solvation = -15719.823087 eV Core-core repulsion = 13175.009313 eV Total energy + Delta-G solvation = -2544.813774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.84033 -36.07401 -34.69098 -33.35264 -31.37031 -28.95082 -28.09283 -25.76958 -24.16460 -22.71066 -21.01918 -20.70301 -19.84152 -16.70233 -16.30184 -16.15016 -15.41470 -14.92403 -14.56560 -14.38727 -13.96210 -13.80019 -13.35202 -12.95469 -12.50455 -12.25487 -12.02586 -11.79660 -11.52692 -11.40088 -10.95515 -10.82353 -10.76184 -10.70742 -10.53000 -10.49724 -9.76221 -9.66583 -9.33896 -9.06602 -8.33802 -8.28071 -5.98878 -4.01145 3.34277 3.38463 3.41104 3.82358 4.29527 4.31021 4.47515 4.66064 4.71992 5.00304 5.10202 5.19276 5.26878 5.32786 5.36864 5.50599 5.61470 5.72913 5.74400 5.78248 5.80342 5.85221 5.94177 5.96306 6.08148 6.29061 6.66401 6.69338 6.84165 7.12189 7.29342 7.53826 7.68480 7.83259 8.01220 8.44274 9.05794 9.62786 11.12552 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047674 B = 0.004190 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.181321 B = 6681.307784 C = 6982.135833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.126 4.126 4 H 0.092 0.908 5 C 0.055 3.945 6 O -0.382 6.382 7 C 0.056 3.944 8 C 0.056 3.944 9 H 0.059 0.941 10 N -0.679 5.679 11 C 0.058 3.942 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.341 0.659 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.014 0.986 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.689 -0.281 -10.188 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.145 4.145 4 H 0.110 0.890 5 C -0.022 4.022 6 O -0.301 6.301 7 C -0.021 4.021 8 C -0.055 4.055 9 H 0.077 0.923 10 N -0.311 5.311 11 C -0.071 4.071 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.297 0.315 -10.586 19.436 hybrid contribution 0.260 -0.808 1.310 1.561 sum -16.038 -0.492 -9.276 18.533 Atomic orbital electron populations 1.21808 0.95522 1.01762 1.01933 1.21595 0.96092 0.95332 1.02465 1.22740 0.95627 0.97303 0.98817 0.88961 1.23173 0.86815 0.98798 0.93433 1.88853 1.19516 1.91388 1.30296 1.23574 0.93494 0.98487 0.86581 1.23143 0.93676 0.97596 0.91104 0.92292 1.60568 1.04795 1.63879 1.01867 1.22207 0.87564 0.97503 0.99803 1.21627 0.99922 1.00842 0.92089 1.19061 0.89385 0.96480 0.96636 1.21217 0.97609 1.39010 0.98004 0.92724 1.25031 0.96630 0.95249 0.97581 1.69959 1.05544 1.42063 1.36035 0.86650 0.77395 0.78915 0.84992 1.20278 1.21303 1.20205 0.92644 0.92624 0.92520 0.91621 0.91646 0.92490 0.89986 0.91021 0.89136 0.84055 0.91392 0.95580 0.93644 0.92503 0.96560 0.96811 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.77 37.16 0.36 -0.77 16 2 C -0.12 -1.04 5.11 -26.73 -0.14 -1.18 16 3 C -0.13 -1.28 2.57 -89.09 -0.23 -1.51 16 4 H 0.09 0.93 8.02 -51.93 -0.42 0.51 16 5 C 0.06 0.57 6.95 37.73 0.26 0.83 16 6 O -0.38 -5.07 11.52 -35.23 -0.41 -5.48 16 7 C 0.06 0.72 7.36 38.21 0.28 1.00 16 8 C 0.06 0.69 2.96 -65.70 -0.19 0.50 16 9 H 0.06 0.78 7.64 -51.93 -0.40 0.38 16 10 N -0.68 -9.61 6.32 -104.61 -0.66 -10.28 16 11 C 0.06 0.98 5.55 -3.82 -0.02 0.96 16 12 C -0.11 -2.20 5.41 -26.73 -0.14 -2.34 16 13 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 14 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H 0.05 0.38 7.13 -51.93 -0.37 0.00 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.74 6.96 -51.93 -0.36 0.38 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.34 4.49 8.49 -39.29 -0.33 4.16 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.03 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -30.16 307.27 -8.00 -38.16 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.91 Total: -1.64 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.37 Total: -15.74 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.08 Total: -36.72 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.41 Total: -5.48 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.16 -8.00 -38.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699849270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.666 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds