Wall clock time and date at job start Sun Mar 29 2020 21:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 H 1.08993 * 110.54502 * 52.38251 * 3 2 1 5 5 C 1.54103 * 110.48529 * 289.76240 * 3 2 1 6 6 O 1.43745 * 107.29640 * 243.35359 * 5 3 2 7 7 C 1.44379 * 106.97456 * 333.48986 * 6 5 3 8 8 C 1.54812 * 110.48763 * 174.99940 * 3 2 1 9 9 H 1.09004 * 110.93856 * 21.34449 * 8 3 2 10 10 N 1.46899 * 110.91081 * 257.75277 * 8 3 2 11 11 C 1.46895 * 111.00175 * 160.84104 * 10 8 3 12 12 C 1.53005 * 109.47064 * 180.02562 * 11 10 8 13 13 C 1.52992 * 109.47274 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47257 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47163 * 59.99902 * 18 16 14 20 20 H 1.48495 * 109.47159 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47290 * 299.99897 * 18 16 14 22 22 H 1.08998 * 109.46571 * 60.00291 * 1 2 3 23 23 H 1.08996 * 109.46742 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47049 * 300.00445 * 1 2 3 25 25 H 1.08997 * 109.47238 * 240.00075 * 2 1 3 26 26 H 1.08999 * 109.47240 * 119.99370 * 2 1 3 27 27 H 1.09001 * 109.87153 * 123.93316 * 5 3 2 28 28 H 1.08996 * 109.88097 * 2.78475 * 5 3 2 29 29 H 1.09003 * 110.62173 * 281.55656 * 7 6 5 30 30 H 1.09003 * 110.75222 * 158.62486 * 7 6 5 31 31 H 1.00902 * 110.99614 * 36.88800 * 10 8 3 32 32 H 1.08999 * 109.47537 * 60.00564 * 11 10 8 33 33 H 1.09000 * 109.47104 * 299.99693 * 11 10 8 34 34 H 1.09004 * 109.47166 * 59.99485 * 12 11 10 35 35 H 1.09005 * 109.46988 * 299.99873 * 12 11 10 36 36 H 1.09004 * 109.47330 * 59.99726 * 13 12 11 37 37 H 1.08997 * 109.47279 * 300.00213 * 13 12 11 38 38 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 2.0108 0.8084 5 6 1.7596 2.1137 -1.3586 6 8 3.0311 2.4344 -1.9474 7 6 3.9680 2.6021 -0.8618 8 6 3.5827 1.4718 0.1264 9 1 4.0169 0.5208 -0.1820 10 7 3.9901 1.8116 1.4962 11 6 5.3801 1.4084 1.7474 12 6 5.7671 1.7773 3.1810 13 6 7.2146 1.3567 3.4428 14 6 7.5959 1.7206 4.8547 15 1 6.8778 2.2039 5.5005 16 6 8.8620 1.4375 5.3216 17 7 9.7351 0.8449 4.5366 18 14 9.3344 1.8879 7.0718 19 1 8.4359 1.1861 8.0233 20 1 10.7394 1.4798 7.3259 21 1 9.2033 3.3554 7.2579 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.1800 3.0247 -1.2091 28 1 1.2141 1.4269 -2.0057 29 1 3.8436 3.5791 -0.3948 30 1 4.9922 2.4731 -1.2120 31 1 3.3658 1.3978 2.1723 32 1 6.0398 1.9232 1.0488 33 1 5.4762 0.3312 1.6113 34 1 5.1074 1.2622 3.8794 35 1 5.6709 2.8545 3.3176 36 1 7.8745 1.8715 2.7445 37 1 7.3104 0.2796 3.3064 38 1 10.6259 0.6461 4.8650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699849270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:51 Heat of formation + Delta-G solvation = -94.581229 kcal Electronic energy + Delta-G solvation = -15720.679869 eV Core-core repulsion = 13175.009313 eV Total energy + Delta-G solvation = -2545.670557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79174 -37.43422 -35.75031 -35.07251 -33.09275 -30.14214 -29.07931 -27.51863 -24.99077 -24.38230 -22.15427 -22.03278 -21.04534 -18.48083 -17.62644 -17.17912 -16.66194 -16.48142 -15.93252 -15.40283 -15.33603 -14.88298 -14.33488 -14.23302 -13.84404 -13.79643 -13.35606 -13.00755 -12.75485 -12.68686 -12.49917 -12.42303 -12.19153 -11.78915 -11.63403 -11.52669 -11.50363 -11.34899 -11.07228 -10.65326 -10.54794 -9.47953 -8.20023 -6.31240 1.40479 1.43654 1.51632 2.41232 2.82455 3.13172 3.27712 3.42295 3.82278 3.87107 4.15508 4.21072 4.23628 4.37231 4.41050 4.52230 4.59578 4.69618 4.75539 4.78549 4.83750 4.87675 4.98055 5.06628 5.12168 5.15545 5.23939 5.26758 5.42123 5.51583 5.74375 5.79442 5.85849 6.05599 6.26408 6.40877 6.85687 7.38114 8.91758 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047674 B = 0.004190 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.181321 B = 6681.307784 C = 6982.135833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.116 4.116 4 H 0.098 0.902 5 C 0.051 3.949 6 O -0.399 6.399 7 C 0.055 3.945 8 C 0.055 3.945 9 H 0.053 0.947 10 N -0.674 5.674 11 C 0.071 3.929 12 C -0.092 4.092 13 C 0.024 3.976 14 C -0.544 4.544 15 H 0.060 0.940 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.267 1.267 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.349 0.651 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.052 0.948 35 H 0.054 0.946 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.248 0.000 -9.556 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.135 4.135 4 H 0.116 0.884 5 C -0.026 4.026 6 O -0.318 6.318 7 C -0.022 4.022 8 C -0.056 4.056 9 H 0.071 0.929 10 N -0.307 5.307 11 C -0.058 4.058 12 C -0.130 4.130 13 C -0.014 4.014 14 C -0.582 4.582 15 H 0.079 0.921 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.192 1.192 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.169 0.831 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.886 0.599 -9.958 20.480 hybrid contribution 0.729 -0.903 1.060 1.571 sum -17.158 -0.304 -8.898 19.330 Atomic orbital electron populations 1.21788 0.94103 1.02371 1.02477 1.21575 0.97280 0.94238 1.02144 1.22691 0.93563 0.98288 0.98982 0.88425 1.23369 0.85870 0.99750 0.93595 1.88836 1.20639 1.91567 1.30780 1.23534 0.93520 0.98425 0.86727 1.23151 0.95579 0.97102 0.89749 0.92861 1.60453 1.03295 1.63864 1.03119 1.21896 0.89370 0.97222 0.97287 1.21368 0.96504 1.00516 0.94575 1.18975 0.92433 0.94657 0.95286 1.21680 0.98177 1.39155 0.99223 0.92146 1.26001 0.96578 0.94959 1.02357 1.70096 1.06004 1.43074 1.38290 0.85490 0.77209 0.79051 0.79243 1.19095 1.20838 1.19157 0.91853 0.92034 0.92231 0.91863 0.92124 0.91362 0.88457 0.91348 0.89579 0.83109 0.92018 0.95793 0.92908 0.92737 0.99079 0.99110 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.77 71.98 0.70 -1.14 16 2 C -0.11 -1.82 5.11 30.60 0.16 -1.66 16 3 C -0.12 -2.14 2.57 -9.80 -0.03 -2.16 16 4 H 0.10 1.72 8.02 -2.39 -0.02 1.70 16 5 C 0.05 0.94 6.95 72.36 0.50 1.45 16 6 O -0.40 -10.13 11.52 -148.98 -1.72 -11.85 16 7 C 0.06 1.39 7.36 72.67 0.53 1.93 16 8 C 0.05 1.31 2.96 46.22 0.14 1.44 16 9 H 0.05 1.36 7.64 -2.38 -0.02 1.34 16 10 N -0.67 -18.33 6.32 -484.87 -3.07 -21.39 16 11 C 0.07 2.42 5.55 86.31 0.48 2.90 16 12 C -0.09 -3.77 5.41 30.59 0.17 -3.60 16 13 C 0.02 1.29 4.97 29.85 0.15 1.44 16 14 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 17 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 18 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H 0.06 0.68 7.13 -2.39 -0.02 0.66 16 23 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.51 6.96 -2.39 -0.02 1.49 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.35 8.60 8.49 -89.69 -0.76 7.84 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.02 0.82 8.09 -2.39 -0.02 0.80 16 34 H 0.05 2.07 8.14 -2.38 -0.02 2.06 16 35 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 36 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -64.10 307.27 1.27 -62.83 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.24 Total: 11.23 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 3.50 Total: -30.16 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -2.78 Total: -78.58 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -1.72 Total: -11.85 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.10 1.27 -62.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699849270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.752 kcal (2) G-P(sol) polarization free energy of solvation -64.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds