Wall clock time and date at job start Sun Mar 29 2020 21:43:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53002 * 109.47090 * 2 1
4 4 H 1.08993 * 110.54502 * 52.38251 * 3 2 1
5 5 C 1.54103 * 110.48529 * 289.76240 * 3 2 1
6 6 O 1.43745 * 107.29640 * 243.35359 * 5 3 2
7 7 C 1.44379 * 106.97456 * 333.48986 * 6 5 3
8 8 C 1.54812 * 110.48763 * 174.99940 * 3 2 1
9 9 H 1.09004 * 110.93856 * 21.34449 * 8 3 2
10 10 N 1.46899 * 110.91081 * 257.75277 * 8 3 2
11 11 C 1.46895 * 111.00175 * 160.84104 * 10 8 3
12 12 C 1.53005 * 109.47064 * 180.02562 * 11 10 8
13 13 C 1.52992 * 109.47274 * 179.97438 * 12 11 10
14 14 C 1.50700 * 109.47257 * 179.97438 * 13 12 11
15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12
16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12
17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13
18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13
19 19 H 1.48503 * 109.47163 * 59.99902 * 18 16 14
20 20 H 1.48495 * 109.47159 * 179.97438 * 18 16 14
21 21 H 1.48505 * 109.47290 * 299.99897 * 18 16 14
22 22 H 1.08998 * 109.46571 * 60.00291 * 1 2 3
23 23 H 1.08996 * 109.46742 * 180.02562 * 1 2 3
24 24 H 1.08998 * 109.47049 * 300.00445 * 1 2 3
25 25 H 1.08997 * 109.47238 * 240.00075 * 2 1 3
26 26 H 1.08999 * 109.47240 * 119.99370 * 2 1 3
27 27 H 1.09001 * 109.87153 * 123.93316 * 5 3 2
28 28 H 1.08996 * 109.88097 * 2.78475 * 5 3 2
29 29 H 1.09003 * 110.62173 * 281.55656 * 7 6 5
30 30 H 1.09003 * 110.75222 * 158.62486 * 7 6 5
31 31 H 1.00902 * 110.99614 * 36.88800 * 10 8 3
32 32 H 1.08999 * 109.47537 * 60.00564 * 11 10 8
33 33 H 1.09000 * 109.47104 * 299.99693 * 11 10 8
34 34 H 1.09004 * 109.47166 * 59.99485 * 12 11 10
35 35 H 1.09005 * 109.46988 * 299.99873 * 12 11 10
36 36 H 1.09004 * 109.47330 * 59.99726 * 13 12 11
37 37 H 1.08997 * 109.47279 * 300.00213 * 13 12 11
38 38 H 0.97000 * 119.99468 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5802 2.0108 0.8084
5 6 1.7596 2.1137 -1.3586
6 8 3.0311 2.4344 -1.9474
7 6 3.9680 2.6021 -0.8618
8 6 3.5827 1.4718 0.1264
9 1 4.0169 0.5208 -0.1820
10 7 3.9901 1.8116 1.4962
11 6 5.3801 1.4084 1.7474
12 6 5.7671 1.7773 3.1810
13 6 7.2146 1.3567 3.4428
14 6 7.5959 1.7206 4.8547
15 1 6.8778 2.2039 5.5005
16 6 8.8620 1.4375 5.3216
17 7 9.7351 0.8449 4.5366
18 14 9.3344 1.8879 7.0718
19 1 8.4359 1.1861 8.0233
20 1 10.7394 1.4798 7.3259
21 1 9.2033 3.3554 7.2579
22 1 -0.3632 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5139 0.8899
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5137 0.8900
27 1 1.1800 3.0247 -1.2091
28 1 1.2141 1.4269 -2.0057
29 1 3.8436 3.5791 -0.3948
30 1 4.9922 2.4731 -1.2120
31 1 3.3658 1.3978 2.1723
32 1 6.0398 1.9232 1.0488
33 1 5.4762 0.3312 1.6113
34 1 5.1074 1.2622 3.8794
35 1 5.6709 2.8545 3.3176
36 1 7.8745 1.8715 2.7445
37 1 7.3104 0.2796 3.3064
38 1 10.6259 0.6461 4.8650
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000699849270.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:43:51
Heat of formation + Delta-G solvation = -94.581229 kcal
Electronic energy + Delta-G solvation = -15720.679869 eV
Core-core repulsion = 13175.009313 eV
Total energy + Delta-G solvation = -2545.670557 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.79174 -37.43422 -35.75031 -35.07251 -33.09275 -30.14214 -29.07931 -27.51863
-24.99077 -24.38230 -22.15427 -22.03278 -21.04534 -18.48083 -17.62644 -17.17912
-16.66194 -16.48142 -15.93252 -15.40283 -15.33603 -14.88298 -14.33488 -14.23302
-13.84404 -13.79643 -13.35606 -13.00755 -12.75485 -12.68686 -12.49917 -12.42303
-12.19153 -11.78915 -11.63403 -11.52669 -11.50363 -11.34899 -11.07228 -10.65326
-10.54794 -9.47953 -8.20023 -6.31240 1.40479 1.43654 1.51632 2.41232
2.82455 3.13172 3.27712 3.42295 3.82278 3.87107 4.15508 4.21072
4.23628 4.37231 4.41050 4.52230 4.59578 4.69618 4.75539 4.78549
4.83750 4.87675 4.98055 5.06628 5.12168 5.15545 5.23939 5.26758
5.42123 5.51583 5.74375 5.79442 5.85849 6.05599 6.26408 6.40877
6.85687 7.38114 8.91758
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.047674 B = 0.004190 C = 0.004009
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 587.181321 B = 6681.307784 C = 6982.135833
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.115 4.115
3 C -0.116 4.116
4 H 0.098 0.902
5 C 0.051 3.949
6 O -0.399 6.399
7 C 0.055 3.945
8 C 0.055 3.945
9 H 0.053 0.947
10 N -0.674 5.674
11 C 0.071 3.929
12 C -0.092 4.092
13 C 0.024 3.976
14 C -0.544 4.544
15 H 0.060 0.940
16 C -0.001 4.001
17 N -0.934 5.934
18 Si 0.966 3.034
19 H -0.266 1.266
20 H -0.283 1.283
21 H -0.267 1.267
22 H 0.062 0.938
23 H 0.061 0.939
24 H 0.059 0.941
25 H 0.063 0.937
26 H 0.060 0.940
27 H 0.068 0.932
28 H 0.097 0.903
29 H 0.068 0.932
30 H 0.086 0.914
31 H 0.349 0.651
32 H 0.061 0.939
33 H 0.024 0.976
34 H 0.052 0.948
35 H 0.054 0.946
36 H -0.009 1.009
37 H -0.009 1.009
38 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.248 0.000 -9.556 20.599
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.152 4.152
3 C -0.135 4.135
4 H 0.116 0.884
5 C -0.026 4.026
6 O -0.318 6.318
7 C -0.022 4.022
8 C -0.056 4.056
9 H 0.071 0.929
10 N -0.307 5.307
11 C -0.058 4.058
12 C -0.130 4.130
13 C -0.014 4.014
14 C -0.582 4.582
15 H 0.079 0.921
16 C -0.199 4.199
17 N -0.575 5.575
18 Si 0.790 3.210
19 H -0.191 1.191
20 H -0.208 1.208
21 H -0.192 1.192
22 H 0.081 0.919
23 H 0.080 0.920
24 H 0.078 0.922
25 H 0.081 0.919
26 H 0.079 0.921
27 H 0.086 0.914
28 H 0.115 0.885
29 H 0.087 0.913
30 H 0.104 0.896
31 H 0.169 0.831
32 H 0.080 0.920
33 H 0.042 0.958
34 H 0.071 0.929
35 H 0.073 0.927
36 H 0.009 0.991
37 H 0.009 0.991
38 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -17.886 0.599 -9.958 20.480
hybrid contribution 0.729 -0.903 1.060 1.571
sum -17.158 -0.304 -8.898 19.330
Atomic orbital electron populations
1.21788 0.94103 1.02371 1.02477 1.21575 0.97280 0.94238 1.02144
1.22691 0.93563 0.98288 0.98982 0.88425 1.23369 0.85870 0.99750
0.93595 1.88836 1.20639 1.91567 1.30780 1.23534 0.93520 0.98425
0.86727 1.23151 0.95579 0.97102 0.89749 0.92861 1.60453 1.03295
1.63864 1.03119 1.21896 0.89370 0.97222 0.97287 1.21368 0.96504
1.00516 0.94575 1.18975 0.92433 0.94657 0.95286 1.21680 0.98177
1.39155 0.99223 0.92146 1.26001 0.96578 0.94959 1.02357 1.70096
1.06004 1.43074 1.38290 0.85490 0.77209 0.79051 0.79243 1.19095
1.20838 1.19157 0.91853 0.92034 0.92231 0.91863 0.92124 0.91362
0.88457 0.91348 0.89579 0.83109 0.92018 0.95793 0.92908 0.92737
0.99079 0.99110 0.92770
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.85 9.77 71.98 0.70 -1.14 16
2 C -0.11 -1.82 5.11 30.60 0.16 -1.66 16
3 C -0.12 -2.14 2.57 -9.80 -0.03 -2.16 16
4 H 0.10 1.72 8.02 -2.39 -0.02 1.70 16
5 C 0.05 0.94 6.95 72.36 0.50 1.45 16
6 O -0.40 -10.13 11.52 -148.98 -1.72 -11.85 16
7 C 0.06 1.39 7.36 72.67 0.53 1.93 16
8 C 0.05 1.31 2.96 46.22 0.14 1.44 16
9 H 0.05 1.36 7.64 -2.38 -0.02 1.34 16
10 N -0.67 -18.33 6.32 -484.87 -3.07 -21.39 16
11 C 0.07 2.42 5.55 86.31 0.48 2.90 16
12 C -0.09 -3.77 5.41 30.59 0.17 -3.60 16
13 C 0.02 1.29 4.97 29.85 0.15 1.44 16
14 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16
15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16
16 C 0.00 -0.08 5.46 84.66 0.46 0.39 16
17 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16
18 Si 0.97 44.49 29.54 68.60 2.03 46.52 16
19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16
20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16
22 H 0.06 0.68 7.13 -2.39 -0.02 0.66 16
23 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
25 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16
26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
28 H 0.10 1.51 6.96 -2.39 -0.02 1.49 16
29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16
31 H 0.35 8.60 8.49 -89.69 -0.76 7.84 16
32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16
33 H 0.02 0.82 8.09 -2.39 -0.02 0.80 16
34 H 0.05 2.07 8.14 -2.38 -0.02 2.06 16
35 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16
36 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16
37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16
38 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16
Total: -1.00 -64.10 307.27 1.27 -62.83
By element:
Atomic # 1 Polarization: 10.99 SS G_CDS: 0.24 Total: 11.23 kcal
Atomic # 6 Polarization: -33.65 SS G_CDS: 3.50 Total: -30.16 kcal
Atomic # 7 Polarization: -75.80 SS G_CDS: -2.78 Total: -78.58 kcal
Atomic # 8 Polarization: -10.13 SS G_CDS: -1.72 Total: -11.85 kcal
Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal
Total: -64.10 1.27 -62.83 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000699849270.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.752 kcal
(2) G-P(sol) polarization free energy of solvation -64.099 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.851 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.829 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.581 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds