Wall clock time and date at job start Sun Mar 29 2020 21:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47628 * 2 1 4 4 H 1.08998 * 110.45268 * 53.93409 * 3 2 1 5 5 C 1.54481 * 110.62522 * 291.25473 * 3 2 1 6 6 O 1.44430 * 104.79994 * 217.31691 * 5 3 2 7 7 C 1.44420 * 105.27562 * 40.51441 * 6 5 3 8 8 C 1.54480 * 104.80278 * 319.48185 * 7 6 5 9 9 H 1.08995 * 110.63338 * 265.28104 * 8 7 6 10 10 N 1.46900 * 110.51141 * 142.62456 * 8 7 6 11 11 C 1.46896 * 111.00169 * 79.28241 * 10 8 7 12 12 C 1.52998 * 109.47603 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46999 * 180.02562 * 12 11 10 14 14 C 1.50708 * 109.46784 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99852 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00131 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99993 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47129 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47025 * 120.00283 * 18 16 14 21 21 H 1.48501 * 109.47345 * 240.00354 * 18 16 14 22 22 H 1.08999 * 109.47311 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46904 * 300.00303 * 1 2 3 24 24 H 1.08995 * 109.46937 * 59.99491 * 1 2 3 25 25 H 1.09005 * 109.46904 * 239.99697 * 2 1 3 26 26 H 1.09001 * 109.47361 * 120.00422 * 2 1 3 27 27 H 1.09002 * 110.37033 * 336.14508 * 5 3 2 28 28 H 1.09001 * 110.37286 * 98.37507 * 5 3 2 29 29 H 1.09004 * 110.37322 * 200.65925 * 7 6 5 30 30 H 1.08993 * 110.37559 * 78.31789 * 7 6 5 31 31 H 1.00896 * 111.00427 * 203.23836 * 10 8 7 32 32 H 1.09003 * 109.47165 * 300.00751 * 11 10 8 33 33 H 1.09007 * 109.46731 * 60.00038 * 11 10 8 34 34 H 1.09003 * 109.46792 * 300.00145 * 12 11 10 35 35 H 1.08998 * 109.46982 * 60.00069 * 12 11 10 36 36 H 1.09003 * 109.47199 * 299.99567 * 13 12 11 37 37 H 1.08998 * 109.47466 * 60.00037 * 13 12 11 38 38 H 0.97001 * 120.00108 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6003 2.0020 0.8255 5 6 1.7274 2.1302 -1.3474 6 8 2.8768 2.9640 -1.6115 7 6 4.0192 2.1731 -1.2178 8 6 3.5825 1.4713 0.0873 9 1 3.9051 2.0431 0.9573 10 7 4.1205 0.1055 0.1422 11 6 5.5309 0.1114 0.5529 12 6 6.0551 -1.3253 0.5978 13 6 7.5238 -1.3191 1.0262 14 6 8.0400 -2.7343 1.0711 15 1 7.3857 -3.5559 0.8196 16 6 9.3474 -2.9801 1.4331 17 7 10.1441 -1.9796 1.7398 18 14 9.9870 -4.7343 1.4894 19 1 8.9003 -5.6700 1.1036 20 1 11.1224 -4.8779 0.5431 21 1 10.4469 -5.0497 2.8658 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6096 1.3859 -2.1350 28 1 0.8267 2.7383 -1.2631 29 1 4.8801 2.8156 -1.0332 30 1 4.2528 1.4354 -1.9855 31 1 3.5682 -0.4764 0.7540 32 1 6.1155 0.6889 -0.1633 33 1 5.6195 0.5620 1.5415 34 1 5.4705 -1.9031 1.3138 35 1 5.9665 -1.7755 -0.3909 36 1 8.1087 -0.7412 0.3105 37 1 7.6121 -0.8691 2.0150 38 1 11.0638 -2.1526 1.9949 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699849274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:53 Heat of formation + Delta-G solvation = -86.380828 kcal Electronic energy + Delta-G solvation = -15871.621371 eV Core-core repulsion = 13326.306410 eV Total energy + Delta-G solvation = -2545.314960 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.86626 -37.44858 -35.83384 -34.88822 -32.98842 -30.14721 -29.01042 -27.54487 -25.18847 -24.09655 -22.82945 -21.87947 -20.44107 -18.49522 -17.48821 -17.15317 -16.68453 -16.46749 -16.35764 -15.53379 -15.30891 -14.67896 -14.35881 -14.09172 -14.02789 -13.49800 -13.27271 -12.96992 -12.77358 -12.70867 -12.41132 -12.28946 -12.10038 -11.77552 -11.64933 -11.47484 -11.41216 -11.36239 -11.05755 -10.78202 -10.56084 -9.43345 -8.20416 -6.31439 1.40245 1.40662 1.54168 2.40998 2.90745 3.12998 3.28591 3.48757 3.80534 3.89448 4.18539 4.24475 4.32617 4.38441 4.41044 4.54535 4.60245 4.70684 4.78984 4.83883 4.86977 4.93166 4.98195 5.04352 5.11876 5.21882 5.25812 5.34406 5.49925 5.52102 5.74196 5.74866 5.85875 6.05393 6.26622 6.44293 6.85917 7.38096 8.91773 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044205 B = 0.004480 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.262872 B = 6249.119421 C = 6692.514293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.114 4.114 4 H 0.092 0.908 5 C 0.051 3.949 6 O -0.396 6.396 7 C 0.053 3.947 8 C 0.052 3.948 9 H 0.051 0.949 10 N -0.676 5.676 11 C 0.069 3.931 12 C -0.091 4.091 13 C 0.024 3.976 14 C -0.542 4.542 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.278 1.278 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.350 0.650 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.051 0.949 35 H 0.054 0.946 36 H -0.009 1.009 37 H -0.010 1.010 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.028 6.032 -3.488 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.133 4.133 4 H 0.111 0.889 5 C -0.026 4.026 6 O -0.315 6.315 7 C -0.024 4.024 8 C -0.058 4.058 9 H 0.069 0.931 10 N -0.312 5.312 11 C -0.060 4.060 12 C -0.129 4.129 13 C -0.014 4.014 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.204 1.204 21 H -0.203 1.203 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.736 6.268 -4.192 20.196 hybrid contribution 0.921 -0.616 1.200 1.633 sum -17.815 5.652 -2.992 18.928 Atomic orbital electron populations 1.21793 0.94455 1.02249 1.02246 1.21423 0.96443 0.94217 1.02611 1.22665 0.92991 0.98426 0.99201 0.88933 1.23630 0.89558 0.94043 0.95328 1.89081 1.16396 1.39816 1.86227 1.23450 0.89376 0.94226 0.95343 1.22913 0.95351 0.89958 0.97607 0.93146 1.60713 1.02565 1.10263 1.57620 1.21897 0.89054 0.97305 0.97774 1.21358 0.95906 0.95133 1.00510 1.18986 0.92312 0.95587 0.94498 1.21733 0.96722 0.94021 1.45511 0.92178 1.25994 0.97348 1.01752 0.94812 1.70107 1.06852 1.33120 1.47427 0.85386 0.78379 0.79362 0.77845 1.18537 1.20395 1.20323 0.92214 0.92267 0.92106 0.91441 0.91751 0.91730 0.87463 0.89472 0.91777 0.82700 0.92055 0.95886 0.93005 0.92766 0.99071 0.99119 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.78 71.98 0.70 -1.26 16 2 C -0.11 -1.84 4.20 30.59 0.13 -1.71 16 3 C -0.11 -2.11 3.12 -9.78 -0.03 -2.14 16 4 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 5 C 0.05 0.96 6.44 72.49 0.47 1.43 16 6 O -0.40 -10.12 11.65 -148.98 -1.74 -11.85 16 7 C 0.05 1.36 6.92 72.49 0.50 1.86 16 8 C 0.05 1.25 3.39 45.93 0.16 1.41 16 9 H 0.05 1.25 7.99 -2.39 -0.02 1.23 16 10 N -0.68 -18.30 5.54 -486.34 -2.70 -21.00 16 11 C 0.07 2.33 5.53 86.30 0.48 2.81 16 12 C -0.09 -3.74 5.41 30.59 0.17 -3.58 16 13 C 0.02 1.27 4.97 29.85 0.15 1.42 16 14 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 17 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 18 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 24 H 0.06 0.71 7.58 -2.39 -0.02 0.69 16 25 H 0.07 1.31 7.86 -2.38 -0.02 1.29 16 26 H 0.06 1.11 6.49 -2.39 -0.02 1.10 16 27 H 0.06 1.19 7.78 -2.39 -0.02 1.17 16 28 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.06 1.74 8.06 -2.39 -0.02 1.72 16 31 H 0.35 8.66 6.08 -89.70 -0.54 8.11 16 32 H 0.06 2.15 7.84 -2.39 -0.02 2.13 16 33 H 0.02 0.79 8.10 -2.38 -0.02 0.77 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 36 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -64.19 302.78 1.75 -62.44 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.46 Total: 11.37 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 3.41 Total: -30.37 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -2.41 Total: -78.15 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.74 Total: -11.85 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -64.19 1.75 -62.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699849274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.942 kcal (2) G-P(sol) polarization free energy of solvation -64.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds