Wall clock time and date at job start Sun Mar 29 2020 21:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.47131 * 2 1 4 4 C 1.42895 * 114.00146 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.87619 * 32.38677 * 4 3 2 6 6 C 1.55151 * 110.99319 * 268.55017 * 4 3 2 7 7 C 1.54317 * 103.01836 * 206.21627 * 6 4 3 8 8 N 1.47442 * 107.23385 * 22.27903 * 7 6 4 9 9 C 1.46904 * 110.99807 * 123.25975 * 8 7 6 10 10 H 1.08999 * 109.46916 * 317.71788 * 9 8 7 11 11 C 1.50709 * 109.46873 * 197.72111 * 9 8 7 12 12 H 1.08002 * 120.00130 * 0.03312 * 11 9 8 13 13 C 1.37875 * 119.99748 * 180.02562 * 11 9 8 14 14 N 1.31511 * 120.00103 * 167.53966 * 13 11 9 15 15 Si 1.86798 * 120.00085 * 347.54143 * 13 11 9 16 16 H 1.48499 * 109.47398 * 264.54388 * 15 13 11 17 17 H 1.48500 * 109.47124 * 24.54366 * 15 13 11 18 18 H 1.48505 * 109.47213 * 144.54279 * 15 13 11 19 19 C 1.52991 * 109.47262 * 77.72195 * 9 8 7 20 20 C 1.53000 * 109.46937 * 293.83691 * 19 9 8 21 21 C 1.47845 * 108.56941 * 0.98940 * 8 7 6 22 22 H 1.08994 * 109.46728 * 60.00063 * 1 2 3 23 23 H 1.09002 * 109.46923 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46958 * 300.00339 * 1 2 3 25 25 H 1.08991 * 109.47203 * 239.99705 * 2 1 3 26 26 H 1.09007 * 109.46494 * 119.99664 * 2 1 3 27 27 H 1.08994 * 110.70781 * 87.82838 * 6 4 3 28 28 H 1.09001 * 110.69896 * 324.59410 * 6 4 3 29 29 H 1.08999 * 109.89008 * 262.87612 * 7 6 4 30 30 H 1.09000 * 110.02419 * 141.76142 * 7 6 4 31 31 H 0.96998 * 120.00507 * 180.02562 * 14 13 11 32 32 H 1.09003 * 109.47599 * 53.83837 * 19 9 8 33 33 H 1.09001 * 109.47691 * 173.84436 * 19 9 8 34 34 H 1.09001 * 109.47419 * 71.11927 * 20 19 9 35 35 H 1.09008 * 109.47299 * 191.12117 * 20 19 9 36 36 H 1.09001 * 109.47574 * 311.11972 * 20 19 9 37 37 H 1.09004 * 110.37218 * 94.73462 * 21 8 7 38 38 H 1.08992 * 110.37581 * 217.07339 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8862 0.6333 -0.5446 6 6 3.9815 1.5408 1.4489 7 6 5.3089 2.3079 1.2739 8 7 5.2117 3.0674 0.0138 9 6 5.4298 4.5016 0.2455 10 1 4.9028 4.8079 1.1491 11 6 4.9076 5.2856 -0.9309 12 1 4.4580 4.7700 -1.7667 13 6 5.0035 6.6609 -0.9400 14 7 4.7795 7.3284 -2.0508 15 14 5.4516 7.5764 0.6254 16 1 4.2121 8.0310 1.3051 17 1 6.2080 6.6721 1.5283 18 1 6.2911 8.7538 0.2873 19 6 6.9268 4.7693 0.4126 20 6 7.4251 4.0977 1.6939 21 6 3.8806 2.8233 -0.5815 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.1627 0.5430 1.8484 28 1 3.2973 2.0958 2.0908 29 1 6.1395 1.6042 1.2194 30 1 5.4573 2.9925 2.1090 31 1 4.8474 8.2960 -2.0574 32 1 7.4663 4.3640 -0.4435 33 1 7.0991 5.8438 0.4751 34 1 7.4372 3.0165 1.5564 35 1 8.4330 4.4467 1.9188 36 1 6.7602 4.3515 2.5194 37 1 3.1842 3.6092 -0.2891 38 1 3.9553 2.7662 -1.6674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701709634.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:13 Heat of formation + Delta-G solvation = -36.484196 kcal Electronic energy + Delta-G solvation = -16729.783973 eV Core-core repulsion = 14186.632693 eV Total energy + Delta-G solvation = -2543.151280 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06557 -37.10395 -33.94295 -32.00957 -31.04019 -29.80577 -27.43186 -26.66039 -22.93269 -22.75921 -20.77337 -20.60071 -19.45386 -16.90110 -16.62639 -15.57724 -15.21058 -14.84702 -14.17961 -13.69420 -13.14603 -13.04752 -12.94456 -12.58861 -12.46741 -12.10736 -12.00711 -11.78880 -11.58501 -11.27877 -10.94800 -10.82054 -10.74087 -10.49072 -10.30402 -9.93890 -9.75228 -9.22175 -9.12642 -8.90899 -8.46952 -7.37033 -6.07281 -4.02929 3.28623 3.38458 3.41449 3.80573 4.43176 4.89902 5.03327 5.09301 5.15327 5.22576 5.30733 5.39285 5.44839 5.55250 5.70590 5.89924 5.96504 5.97961 6.03018 6.09537 6.15123 6.19350 6.24663 6.45969 6.60762 6.68015 6.70110 6.78385 6.95427 7.01505 7.34160 7.52028 7.63457 7.98262 8.07743 8.63642 9.00641 9.57079 11.05279 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.007936 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.420745 B = 3527.198643 C = 4109.426866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.376 6.376 4 C 0.073 3.927 5 H 0.069 0.931 6 C -0.165 4.165 7 C 0.038 3.962 8 N -0.514 5.514 9 C 0.188 3.812 10 H -0.004 1.004 11 C -0.519 4.519 12 H 0.083 0.917 13 C 0.076 3.924 14 N -0.893 5.893 15 Si 0.856 3.144 16 H -0.284 1.284 17 H -0.243 1.243 18 H -0.287 1.287 19 C -0.118 4.118 20 C -0.156 4.156 21 C 0.071 3.929 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.263 0.737 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 -12.673 6.884 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.295 6.295 4 C 0.014 3.986 5 H 0.087 0.913 6 C -0.204 4.204 7 C -0.090 4.090 8 N -0.239 5.239 9 C 0.080 3.920 10 H 0.014 0.986 11 C -0.557 4.557 12 H 0.100 0.900 13 C -0.127 4.127 14 N -0.531 5.531 15 Si 0.683 3.317 16 H -0.211 1.211 17 H -0.167 1.167 18 H -0.213 1.213 19 C -0.156 4.156 20 C -0.213 4.213 21 C -0.057 4.057 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.086 -12.479 6.452 14.202 hybrid contribution -0.217 0.724 1.367 1.562 sum -2.303 -11.755 7.818 14.304 Atomic orbital electron populations 1.21738 0.94105 1.01778 1.03184 1.22431 0.95315 0.84589 0.99627 1.87933 1.21141 1.25530 1.94875 1.23445 0.80084 0.99757 0.95310 0.91302 1.23285 0.98614 1.00505 0.97977 1.23016 0.95551 0.97021 0.93400 1.63556 1.27851 1.10880 1.21608 1.19826 0.92303 0.83807 0.96081 0.98608 1.21092 1.39709 0.91139 1.03768 0.89951 1.24893 0.94622 0.97548 0.95607 1.69946 1.49661 1.07668 1.25776 0.87434 0.78760 0.79901 0.85603 1.21086 1.16666 1.21280 1.22008 0.98165 0.99555 0.95879 1.22103 0.99234 1.00988 0.98968 1.22749 0.90265 0.93104 0.99604 0.91768 0.91496 0.91997 0.93617 0.93893 0.91843 0.91024 0.91527 0.92350 0.92710 0.91853 0.92268 0.92509 0.94503 0.94015 0.91586 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.16 0.38 -1.20 16 2 C 0.06 0.71 6.54 37.16 0.24 0.95 16 3 O -0.38 -6.22 10.15 -35.23 -0.36 -6.58 16 4 C 0.07 1.21 3.48 -24.59 -0.09 1.12 16 5 H 0.07 1.05 7.90 -51.93 -0.41 0.64 16 6 C -0.17 -2.56 6.68 -24.90 -0.17 -2.72 16 7 C 0.04 0.66 4.92 -2.84 -0.01 0.65 16 8 N -0.51 -10.75 5.02 -224.68 -1.13 -11.88 16 9 C 0.19 4.45 1.18 -68.86 -0.08 4.37 16 10 H 0.00 -0.09 6.70 -51.93 -0.35 -0.43 16 11 C -0.52 -14.48 8.10 -34.44 -0.28 -14.76 16 12 H 0.08 2.48 6.54 -52.49 -0.34 2.14 16 13 C 0.08 2.17 5.36 -17.82 -0.10 2.08 16 14 N -0.89 -27.22 13.96 55.43 0.77 -26.45 16 15 Si 0.86 21.08 25.67 -169.99 -4.36 16.72 16 16 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.24 -5.56 5.11 56.52 0.29 -5.27 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 C -0.12 -2.60 4.70 -26.74 -0.13 -2.73 16 20 C -0.16 -2.81 8.42 37.16 0.31 -2.50 16 21 C 0.07 1.45 4.94 -2.30 -0.01 1.44 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.52 8.11 -51.93 -0.42 0.10 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.05 7.42 -51.93 -0.39 0.66 16 30 H 0.06 1.02 5.30 -51.93 -0.28 0.74 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.06 1.37 4.05 -51.93 -0.21 1.16 16 34 H 0.06 0.94 5.81 -51.93 -0.30 0.64 16 35 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 36 H 0.04 0.74 7.20 -51.93 -0.37 0.36 16 37 H 0.07 1.53 7.28 -51.93 -0.38 1.15 16 38 H 0.08 1.68 7.65 -51.93 -0.40 1.28 16 LS Contribution 286.13 15.07 4.31 4.31 Total: -1.00 -29.98 286.13 -7.16 -37.14 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.47 Total: 0.04 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.35 Total: -38.33 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.36 Total: -6.58 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.36 Total: 16.72 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.98 -7.16 -37.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701709634.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.652 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds