Wall clock time and date at job start Sun Mar 29 2020 21:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.47131 * 2 1 4 4 C 1.42895 * 114.00146 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.87619 * 32.38677 * 4 3 2 6 6 C 1.55151 * 110.99319 * 268.55017 * 4 3 2 7 7 C 1.54317 * 103.01836 * 206.21627 * 6 4 3 8 8 N 1.47442 * 107.23385 * 22.27903 * 7 6 4 9 9 C 1.46904 * 110.99807 * 123.25975 * 8 7 6 10 10 H 1.08999 * 109.46916 * 317.71788 * 9 8 7 11 11 C 1.50709 * 109.46873 * 197.72111 * 9 8 7 12 12 H 1.08002 * 120.00130 * 0.03312 * 11 9 8 13 13 C 1.37875 * 119.99748 * 180.02562 * 11 9 8 14 14 N 1.31511 * 120.00103 * 167.53966 * 13 11 9 15 15 Si 1.86798 * 120.00085 * 347.54143 * 13 11 9 16 16 H 1.48499 * 109.47398 * 264.54388 * 15 13 11 17 17 H 1.48500 * 109.47124 * 24.54366 * 15 13 11 18 18 H 1.48505 * 109.47213 * 144.54279 * 15 13 11 19 19 C 1.52991 * 109.47262 * 77.72195 * 9 8 7 20 20 C 1.53000 * 109.46937 * 293.83691 * 19 9 8 21 21 C 1.47845 * 108.56941 * 0.98940 * 8 7 6 22 22 H 1.08994 * 109.46728 * 60.00063 * 1 2 3 23 23 H 1.09002 * 109.46923 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46958 * 300.00339 * 1 2 3 25 25 H 1.08991 * 109.47203 * 239.99705 * 2 1 3 26 26 H 1.09007 * 109.46494 * 119.99664 * 2 1 3 27 27 H 1.08994 * 110.70781 * 87.82838 * 6 4 3 28 28 H 1.09001 * 110.69896 * 324.59410 * 6 4 3 29 29 H 1.08999 * 109.89008 * 262.87612 * 7 6 4 30 30 H 1.09000 * 110.02419 * 141.76142 * 7 6 4 31 31 H 0.96998 * 120.00507 * 180.02562 * 14 13 11 32 32 H 1.09003 * 109.47599 * 53.83837 * 19 9 8 33 33 H 1.09001 * 109.47691 * 173.84436 * 19 9 8 34 34 H 1.09001 * 109.47419 * 71.11927 * 20 19 9 35 35 H 1.09008 * 109.47299 * 191.12117 * 20 19 9 36 36 H 1.09001 * 109.47574 * 311.11972 * 20 19 9 37 37 H 1.09004 * 110.37218 * 94.73462 * 21 8 7 38 38 H 1.08992 * 110.37581 * 217.07339 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8862 0.6333 -0.5446 6 6 3.9815 1.5408 1.4489 7 6 5.3089 2.3079 1.2739 8 7 5.2117 3.0674 0.0138 9 6 5.4298 4.5016 0.2455 10 1 4.9028 4.8079 1.1491 11 6 4.9076 5.2856 -0.9309 12 1 4.4580 4.7700 -1.7667 13 6 5.0035 6.6609 -0.9400 14 7 4.7795 7.3284 -2.0508 15 14 5.4516 7.5764 0.6254 16 1 4.2121 8.0310 1.3051 17 1 6.2080 6.6721 1.5283 18 1 6.2911 8.7538 0.2873 19 6 6.9268 4.7693 0.4126 20 6 7.4251 4.0977 1.6939 21 6 3.8806 2.8233 -0.5815 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.1627 0.5430 1.8484 28 1 3.2973 2.0958 2.0908 29 1 6.1395 1.6042 1.2194 30 1 5.4573 2.9925 2.1090 31 1 4.8474 8.2960 -2.0574 32 1 7.4663 4.3640 -0.4435 33 1 7.0991 5.8438 0.4751 34 1 7.4372 3.0165 1.5564 35 1 8.4330 4.4467 1.9188 36 1 6.7602 4.3515 2.5194 37 1 3.1842 3.6092 -0.2891 38 1 3.9553 2.7662 -1.6674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701709634.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:13 Heat of formation + Delta-G solvation = -58.140402 kcal Electronic energy + Delta-G solvation = -16730.723057 eV Core-core repulsion = 14186.632693 eV Total energy + Delta-G solvation = -2544.090364 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52831 -38.47539 -35.61700 -34.00955 -32.10389 -31.34044 -28.89737 -28.45468 -24.76967 -23.70495 -22.30820 -22.02501 -21.18341 -18.85774 -17.96686 -17.17446 -16.60996 -16.31383 -15.60285 -15.33220 -14.82278 -14.68463 -14.37024 -14.02810 -13.86788 -13.59752 -13.29626 -13.20881 -13.08468 -12.69088 -12.48599 -12.32511 -12.13537 -12.06981 -11.84649 -11.48380 -11.39253 -11.04649 -10.84917 -10.61125 -10.40335 -9.05455 -8.29851 -6.29774 1.31358 1.36208 1.45284 2.34225 2.60020 3.03759 3.44129 3.76304 3.78223 4.10155 4.19882 4.30590 4.35560 4.44065 4.45791 4.51453 4.57425 4.64364 4.79821 4.86790 4.87405 4.92344 5.01301 5.06152 5.09711 5.20236 5.21597 5.28285 5.30634 5.36834 5.48603 5.80409 6.03979 6.23079 6.38544 6.66976 6.76456 7.34138 8.86505 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.007936 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.420745 B = 3527.198643 C = 4109.426866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.404 6.404 4 C 0.084 3.916 5 H 0.088 0.912 6 C -0.154 4.154 7 C 0.035 3.965 8 N -0.523 5.523 9 C 0.192 3.808 10 H -0.010 1.010 11 C -0.522 4.522 12 H 0.040 0.960 13 C 0.016 3.984 14 N -0.944 5.944 15 Si 0.919 3.081 16 H -0.286 1.286 17 H -0.211 1.211 18 H -0.284 1.284 19 C -0.118 4.118 20 C -0.148 4.148 21 C 0.070 3.930 22 H 0.052 0.948 23 H 0.096 0.904 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.265 0.735 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.027 0.973 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -14.778 9.631 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.323 6.323 4 C 0.025 3.975 5 H 0.106 0.894 6 C -0.193 4.193 7 C -0.092 4.092 8 N -0.248 5.248 9 C 0.084 3.916 10 H 0.008 0.992 11 C -0.560 4.560 12 H 0.058 0.942 13 C -0.181 4.181 14 N -0.584 5.584 15 Si 0.743 3.257 16 H -0.213 1.213 17 H -0.133 1.133 18 H -0.210 1.210 19 C -0.156 4.156 20 C -0.205 4.205 21 C -0.058 4.058 22 H 0.071 0.929 23 H 0.115 0.885 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.119 -14.621 9.214 17.318 hybrid contribution -0.601 1.288 0.387 1.473 sum -1.720 -13.333 9.601 16.520 Atomic orbital electron populations 1.21773 0.92971 1.03474 1.02409 1.22738 0.96312 0.82704 1.01015 1.87907 1.20849 1.28508 1.95076 1.23248 0.80715 0.97347 0.96141 0.89397 1.23231 0.97098 1.02158 0.96771 1.23166 0.97533 0.97166 0.91379 1.63477 1.27789 1.09425 1.24133 1.19682 0.93363 0.85098 0.93467 0.99234 1.21383 1.38894 0.91707 1.04057 0.94201 1.25772 0.94867 0.98555 0.98945 1.70093 1.51940 1.08015 1.28357 0.86413 0.78690 0.78806 0.81745 1.21288 1.13312 1.20992 1.21905 0.96456 0.99235 0.98047 1.22018 1.00378 1.01659 0.96401 1.22578 0.89771 0.94920 0.98565 0.92881 0.88534 0.92469 0.92612 0.91967 0.88017 0.91904 0.88946 0.92088 0.92656 0.92989 0.93478 0.90877 0.92270 0.93394 0.95464 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 10.28 71.98 0.74 -2.11 16 2 C 0.05 1.08 6.54 71.98 0.47 1.55 16 3 O -0.40 -13.02 10.15 -148.98 -1.51 -14.53 16 4 C 0.08 2.68 3.48 31.98 0.11 2.79 16 5 H 0.09 2.47 7.90 -2.38 -0.02 2.45 16 6 C -0.15 -4.28 6.68 31.78 0.21 -4.06 16 7 C 0.03 1.09 4.92 86.65 0.43 1.52 16 8 N -0.52 -21.67 5.02 -864.76 -4.34 -26.01 16 9 C 0.19 9.11 1.18 44.17 0.05 9.16 16 10 H -0.01 -0.47 6.70 -2.39 -0.02 -0.49 16 11 C -0.52 -30.42 8.10 25.60 0.21 -30.22 16 12 H 0.04 2.59 6.54 -2.91 -0.02 2.57 16 13 C 0.02 0.96 5.36 84.65 0.45 1.42 16 14 N -0.94 -60.15 13.96 21.45 0.30 -59.85 16 15 Si 0.92 43.97 25.67 68.60 1.76 45.73 16 16 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 17 H -0.21 -8.93 5.11 99.48 0.51 -8.42 16 18 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 19 C -0.12 -5.02 4.70 30.59 0.14 -4.87 16 20 C -0.15 -4.74 8.42 71.98 0.61 -4.13 16 21 C 0.07 2.97 4.94 86.77 0.43 3.40 16 22 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 23 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 1.13 8.11 -2.39 -0.02 1.11 16 26 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 2.47 7.42 -2.39 -0.02 2.45 16 30 H 0.06 1.91 5.30 -2.39 -0.01 1.90 16 31 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.05 2.09 4.05 -2.39 -0.01 2.08 16 34 H 0.07 2.11 5.81 -2.39 -0.01 2.09 16 35 H 0.06 1.65 8.14 -2.38 -0.02 1.64 16 36 H 0.05 1.49 7.20 -2.39 -0.02 1.47 16 37 H 0.03 1.33 7.28 -2.38 -0.02 1.32 16 38 H 0.05 2.49 7.65 -2.39 -0.02 2.48 16 Total: -1.00 -68.32 286.13 0.88 -67.44 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.82 Total: 12.77 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 3.85 Total: -25.55 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -4.04 Total: -85.86 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -1.51 Total: -14.53 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.76 Total: 45.73 kcal Total: -68.32 0.88 -67.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701709634.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.304 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds