Wall clock time and date at job start Sun Mar 29 2020 21:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 H 1.09000 * 109.46825 * 179.02487 * 3 2 1 5 5 C 1.50697 * 109.47217 * 299.02913 * 3 2 1 6 6 H 1.07995 * 120.00150 * 119.72667 * 5 3 2 7 7 C 1.37884 * 119.99992 * 299.99995 * 5 3 2 8 8 N 1.31516 * 119.99525 * 359.72521 * 7 5 3 9 9 Si 1.86789 * 120.00031 * 179.72749 * 7 5 3 10 10 H 1.48500 * 109.47506 * 59.99965 * 9 7 5 11 11 H 1.48508 * 109.47153 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47142 * 299.99791 * 9 7 5 13 13 N 1.46902 * 109.47113 * 59.02762 * 3 2 1 14 14 C 1.46902 * 111.00122 * 183.31335 * 13 3 2 15 15 C 1.46897 * 110.99944 * 59.35943 * 13 3 2 16 16 C 1.52998 * 109.47323 * 196.41158 * 15 13 3 17 17 C 1.52998 * 112.99827 * 50.33233 * 16 15 13 18 18 C 1.54038 * 113.81797 * 278.50942 * 16 15 13 19 19 O 1.44442 * 85.42600 * 223.23616 * 18 16 15 20 20 C 1.44178 * 93.38128 * 24.08254 * 19 18 16 21 21 H 1.08996 * 109.47256 * 305.21413 * 1 2 3 22 22 H 1.09000 * 109.46640 * 65.21038 * 1 2 3 23 23 H 1.08993 * 109.47349 * 185.20950 * 1 2 3 24 24 H 1.09001 * 109.46853 * 239.99681 * 2 1 3 25 25 H 1.09002 * 109.46760 * 120.00307 * 2 1 3 26 26 H 0.97001 * 119.99476 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.46697 * 59.99716 * 14 13 3 28 28 H 1.08999 * 109.46879 * 180.02562 * 14 13 3 29 29 H 1.09001 * 109.46857 * 300.00036 * 14 13 3 30 30 H 1.08998 * 109.47446 * 316.41222 * 15 13 3 31 31 H 1.08997 * 109.47204 * 76.41128 * 15 13 3 32 32 H 1.09001 * 109.47190 * 60.00199 * 17 16 15 33 33 H 1.09007 * 109.47346 * 180.02562 * 17 16 15 34 34 H 1.09003 * 109.47180 * 299.99934 * 17 16 15 35 35 H 1.09003 * 113.86258 * 337.34161 * 18 16 15 36 36 H 1.08995 * 113.86879 * 109.04401 * 18 16 15 37 37 H 1.08999 * 113.87056 * 221.76584 * 20 19 18 38 38 H 1.09004 * 113.85660 * 90.06369 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4424 0.0175 5 6 1.5575 2.1459 -1.2423 6 1 0.9316 3.0219 -1.1582 7 6 1.9106 1.6678 -2.4865 8 7 2.6729 0.6010 -2.5888 9 14 1.3062 2.5352 -4.0264 10 1 1.7951 3.9374 -4.0289 11 1 1.8220 1.8295 -5.2269 12 1 -0.1787 2.5287 -4.0477 13 7 1.5313 2.1417 1.1875 14 6 1.9366 3.5537 1.1810 15 6 1.9701 1.4737 2.4201 16 6 1.1157 1.9566 3.5938 17 6 -0.3861 1.8768 3.3126 18 6 1.5682 3.3081 4.1780 19 8 1.3547 2.6913 5.4666 20 6 1.5270 1.3559 4.9512 21 1 -0.3633 0.5926 0.8396 22 1 -0.3632 0.4309 -0.9330 23 1 -0.3634 -1.0233 0.0933 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.9216 0.2649 -3.4641 27 1 1.5392 4.0416 0.2911 28 1 1.5472 4.0476 2.0712 29 1 3.0246 3.6193 1.1761 30 1 1.8581 0.3953 2.3086 31 1 3.0165 1.7126 2.6100 32 1 -0.6625 0.8430 3.1051 33 1 -0.9381 2.2334 4.1823 34 1 -0.6277 2.4977 2.4498 35 1 2.6108 3.5505 3.9725 36 1 0.8870 4.1315 3.9635 37 1 0.8133 0.6342 5.3486 38 1 2.5572 1.0009 4.9823 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702968160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:30 Heat of formation + Delta-G solvation = -9.703426 kcal Electronic energy + Delta-G solvation = -17143.660054 eV Core-core repulsion = 14601.670075 eV Total energy + Delta-G solvation = -2541.989979 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.49982 -37.11406 -33.37673 -31.47330 -30.85486 -27.07857 -26.70042 -25.97723 -25.67052 -23.52591 -21.83100 -19.06719 -18.42614 -16.23535 -15.92884 -15.85009 -15.32654 -14.95794 -14.20330 -13.72074 -13.28207 -13.15178 -12.71410 -12.31867 -11.98039 -11.86559 -11.79420 -11.39927 -11.07259 -11.03493 -10.92065 -10.80711 -10.42485 -10.18963 -10.09394 -9.87880 -9.63400 -9.41043 -9.25213 -8.79513 -8.40311 -7.14430 -6.01049 -4.04438 3.30822 3.35757 3.38278 3.89448 4.35487 4.47113 4.95026 5.19848 5.30788 5.44445 5.45734 5.46380 5.67063 5.97461 6.05511 6.10425 6.11860 6.22566 6.29157 6.38301 6.40586 6.43191 6.53604 6.62982 6.71404 6.77756 6.82471 7.14642 7.32562 7.41355 7.65372 7.74835 7.83244 8.17287 8.33642 8.60140 9.00724 9.59487 11.05534 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043477 B = 0.007474 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.868294 B = 3745.403846 C = 3948.837391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 C 0.216 3.784 4 H -0.005 1.005 5 C -0.497 4.497 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.527 5.527 14 C 0.033 3.967 15 C 0.055 3.945 16 C -0.113 4.113 17 C -0.113 4.113 18 C 0.041 3.959 19 O -0.389 6.389 20 C 0.038 3.962 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.013 0.987 24 H 0.090 0.910 25 H 0.013 0.987 26 H 0.260 0.740 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.009 0.991 30 H 0.079 0.921 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 1.423 9.775 10.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.110 3.890 4 H 0.013 0.987 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.251 5.251 14 C -0.115 4.115 15 C -0.074 4.074 16 C -0.114 4.114 17 C -0.170 4.170 18 C -0.035 4.035 19 O -0.307 6.307 20 C -0.039 4.039 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.032 0.968 24 H 0.109 0.891 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.098 0.902 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.844 1.390 9.853 10.349 hybrid contribution 0.795 0.341 -1.089 1.391 sum -2.048 1.731 8.764 9.165 Atomic orbital electron populations 1.21496 0.97270 0.97259 1.01994 1.21586 0.95247 0.98217 0.99867 1.19258 0.92545 0.90906 0.86263 0.98709 1.21036 1.30853 1.12001 0.89635 0.92018 1.24900 0.95249 0.95084 0.98908 1.69871 1.36555 1.22900 1.23925 0.86642 0.79168 0.79582 0.82499 1.20443 1.21437 1.20258 1.62074 1.59677 1.01609 1.01740 1.22327 0.97076 0.90957 1.01184 1.22174 0.94615 1.00159 0.90472 1.23581 0.98535 0.94616 0.94688 1.21386 0.91535 1.02642 1.01430 1.24231 1.00534 0.96974 0.81783 1.89639 1.92026 1.18825 1.30259 1.24058 1.00784 0.86696 0.92391 0.93100 0.92782 0.96783 0.89145 0.96840 0.92990 0.90728 0.93633 0.97234 0.90236 0.95951 0.92320 0.93574 0.90324 0.90641 0.89328 0.89494 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.49 37.16 0.35 -2.27 16 2 C -0.11 -2.57 5.14 -26.73 -0.14 -2.70 16 3 C 0.22 5.19 1.76 -68.87 -0.12 5.07 16 4 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 5 C -0.50 -12.96 6.80 -34.44 -0.23 -13.19 16 6 H 0.06 1.61 6.45 -52.49 -0.34 1.27 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.53 -10.50 2.82 -236.29 -0.67 -11.17 16 14 C 0.03 0.62 8.89 60.07 0.53 1.15 16 15 C 0.05 0.94 4.42 -3.83 -0.02 0.92 16 16 C -0.11 -1.66 1.00 -153.43 -0.15 -1.82 16 17 C -0.11 -1.63 8.40 37.16 0.31 -1.32 16 18 C 0.04 0.58 6.11 37.64 0.23 0.81 16 19 O -0.39 -5.92 12.38 -35.23 -0.44 -6.36 16 20 C 0.04 0.51 8.37 37.64 0.31 0.82 16 21 H 0.05 1.02 6.65 -51.93 -0.35 0.68 16 22 H 0.05 1.26 7.44 -51.93 -0.39 0.87 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 25 H 0.01 0.28 6.12 -51.93 -0.32 -0.04 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.07 1.50 6.27 -51.93 -0.33 1.17 16 28 H 0.05 0.72 5.11 -51.93 -0.27 0.45 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 1.42 5.60 -51.93 -0.29 1.13 16 31 H 0.02 0.39 7.89 -51.93 -0.41 -0.02 16 32 H 0.06 0.84 7.83 -51.93 -0.41 0.44 16 33 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.08 1.25 7.63 -51.93 -0.40 0.86 16 35 H 0.08 1.04 7.98 -51.93 -0.41 0.62 16 36 H 0.09 1.18 7.60 -51.93 -0.39 0.79 16 37 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 288.68 15.07 4.35 4.35 Total: -1.00 -27.36 288.68 -6.43 -33.79 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.27 Total: -1.26 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 0.99 Total: -11.02 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.04 Total: -35.44 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.44 Total: -6.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.36 -6.43 -33.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702968160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.085 kcal (2) G-P(sol) polarization free energy of solvation -27.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds