Wall clock time and date at job start Sun Mar 29 2020 21:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 H 1.09000 * 109.46825 * 179.02487 * 3 2 1 5 5 C 1.50697 * 109.47217 * 299.02913 * 3 2 1 6 6 H 1.07995 * 120.00150 * 119.72667 * 5 3 2 7 7 C 1.37884 * 119.99992 * 299.99995 * 5 3 2 8 8 N 1.31516 * 119.99525 * 359.72521 * 7 5 3 9 9 Si 1.86789 * 120.00031 * 179.72749 * 7 5 3 10 10 H 1.48500 * 109.47506 * 59.99965 * 9 7 5 11 11 H 1.48508 * 109.47153 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47142 * 299.99791 * 9 7 5 13 13 N 1.46902 * 109.47113 * 59.02762 * 3 2 1 14 14 C 1.46902 * 111.00122 * 183.31335 * 13 3 2 15 15 C 1.46897 * 110.99944 * 59.35943 * 13 3 2 16 16 C 1.52998 * 109.47323 * 196.41158 * 15 13 3 17 17 C 1.52998 * 112.99827 * 50.33233 * 16 15 13 18 18 C 1.54038 * 113.81797 * 278.50942 * 16 15 13 19 19 O 1.44442 * 85.42600 * 223.23616 * 18 16 15 20 20 C 1.44178 * 93.38128 * 24.08254 * 19 18 16 21 21 H 1.08996 * 109.47256 * 305.21413 * 1 2 3 22 22 H 1.09000 * 109.46640 * 65.21038 * 1 2 3 23 23 H 1.08993 * 109.47349 * 185.20950 * 1 2 3 24 24 H 1.09001 * 109.46853 * 239.99681 * 2 1 3 25 25 H 1.09002 * 109.46760 * 120.00307 * 2 1 3 26 26 H 0.97001 * 119.99476 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.46697 * 59.99716 * 14 13 3 28 28 H 1.08999 * 109.46879 * 180.02562 * 14 13 3 29 29 H 1.09001 * 109.46857 * 300.00036 * 14 13 3 30 30 H 1.08998 * 109.47446 * 316.41222 * 15 13 3 31 31 H 1.08997 * 109.47204 * 76.41128 * 15 13 3 32 32 H 1.09001 * 109.47190 * 60.00199 * 17 16 15 33 33 H 1.09007 * 109.47346 * 180.02562 * 17 16 15 34 34 H 1.09003 * 109.47180 * 299.99934 * 17 16 15 35 35 H 1.09003 * 113.86258 * 337.34161 * 18 16 15 36 36 H 1.08995 * 113.86879 * 109.04401 * 18 16 15 37 37 H 1.08999 * 113.87056 * 221.76584 * 20 19 18 38 38 H 1.09004 * 113.85660 * 90.06369 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4424 0.0175 5 6 1.5575 2.1459 -1.2423 6 1 0.9316 3.0219 -1.1582 7 6 1.9106 1.6678 -2.4865 8 7 2.6729 0.6010 -2.5888 9 14 1.3062 2.5352 -4.0264 10 1 1.7951 3.9374 -4.0289 11 1 1.8220 1.8295 -5.2269 12 1 -0.1787 2.5287 -4.0477 13 7 1.5313 2.1417 1.1875 14 6 1.9366 3.5537 1.1810 15 6 1.9701 1.4737 2.4201 16 6 1.1157 1.9566 3.5938 17 6 -0.3861 1.8768 3.3126 18 6 1.5682 3.3081 4.1780 19 8 1.3547 2.6913 5.4666 20 6 1.5270 1.3559 4.9512 21 1 -0.3633 0.5926 0.8396 22 1 -0.3632 0.4309 -0.9330 23 1 -0.3634 -1.0233 0.0933 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.9216 0.2649 -3.4641 27 1 1.5392 4.0416 0.2911 28 1 1.5472 4.0476 2.0712 29 1 3.0246 3.6193 1.1761 30 1 1.8581 0.3953 2.3086 31 1 3.0165 1.7126 2.6100 32 1 -0.6625 0.8430 3.1051 33 1 -0.9381 2.2334 4.1823 34 1 -0.6277 2.4977 2.4498 35 1 2.6108 3.5505 3.9725 36 1 0.8870 4.1315 3.9635 37 1 0.8133 0.6342 5.3486 38 1 2.5572 1.0009 4.9823 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702968160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:29 Heat of formation + Delta-G solvation = -26.082868 kcal Electronic energy + Delta-G solvation = -17144.370320 eV Core-core repulsion = 14601.670075 eV Total energy + Delta-G solvation = -2542.700245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.66748 -38.77076 -35.13574 -33.10374 -32.49184 -28.62781 -28.18062 -27.31934 -26.96167 -25.30628 -23.46180 -20.82135 -19.65861 -18.09839 -17.39998 -16.97262 -16.70742 -16.54848 -15.91742 -15.29207 -14.99954 -14.36497 -14.33245 -13.93682 -13.68972 -13.20107 -13.02308 -12.84964 -12.77697 -12.73665 -12.53128 -12.32846 -12.14560 -11.97070 -11.65181 -11.44116 -11.20528 -10.95850 -10.71009 -10.49901 -10.41561 -8.83050 -8.06001 -6.15141 1.43389 1.44329 1.51188 2.44410 2.79643 3.18000 3.24861 3.56957 3.99612 4.18583 4.30627 4.41882 4.50791 4.62108 4.66309 4.67779 4.79179 4.81753 4.88430 4.95998 5.02788 5.09427 5.11180 5.19418 5.26153 5.29983 5.36373 5.48287 5.53039 5.60311 5.77030 5.82660 5.93940 6.35024 6.45132 6.80839 6.98783 7.52521 8.99439 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043477 B = 0.007474 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.868294 B = 3745.403846 C = 3948.837391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C 0.222 3.778 4 H -0.047 1.047 5 C -0.502 4.502 6 H 0.059 0.941 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.525 5.525 14 C 0.036 3.964 15 C 0.058 3.942 16 C -0.113 4.113 17 C -0.108 4.108 18 C 0.042 3.958 19 O -0.403 6.403 20 C 0.044 3.956 21 H 0.063 0.937 22 H 0.028 0.972 23 H 0.035 0.965 24 H 0.058 0.942 25 H 0.030 0.970 26 H 0.259 0.741 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.001 0.999 30 H 0.074 0.926 31 H 0.020 0.980 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.352 1.802 10.974 11.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.145 4.145 3 C 0.115 3.885 4 H -0.029 1.029 5 C -0.541 4.541 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.249 5.249 14 C -0.112 4.112 15 C -0.071 4.071 16 C -0.114 4.114 17 C -0.165 4.165 18 C -0.035 4.035 19 O -0.322 6.322 20 C -0.033 4.033 21 H 0.082 0.918 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.019 0.981 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.840 1.780 11.069 11.850 hybrid contribution 1.134 0.223 -1.399 1.815 sum -2.705 2.003 9.669 10.239 Atomic orbital electron populations 1.21358 0.95625 0.98646 1.01119 1.21449 0.96560 0.97386 0.99073 1.19038 0.90002 0.91879 0.87566 1.02937 1.21286 1.30308 1.11835 0.90673 0.92324 1.25601 0.95539 0.95726 1.01648 1.70011 1.37703 1.24134 1.24261 0.85738 0.78774 0.78651 0.79230 1.19932 1.21435 1.19744 1.62026 1.59317 1.02044 1.01474 1.22318 0.96586 0.90353 1.01932 1.22205 0.95138 0.99638 0.90106 1.23582 0.98220 0.95539 0.94068 1.21326 0.91401 1.02437 1.01319 1.24291 1.01000 0.96876 0.81301 1.89635 1.92157 1.19756 1.30644 1.24185 1.01962 0.86417 0.90764 0.91832 0.95247 0.94637 0.92380 0.95182 0.93235 0.92421 0.90407 0.98051 0.90822 0.96199 0.92217 0.92231 0.91911 0.90322 0.88408 0.87660 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 9.49 71.98 0.68 -3.90 16 2 C -0.11 -4.93 5.14 30.60 0.16 -4.77 16 3 C 0.22 10.80 1.76 44.17 0.08 10.88 16 4 H -0.05 -2.63 8.14 -2.39 -0.02 -2.65 16 5 C -0.50 -26.51 6.80 25.60 0.17 -26.34 16 6 H 0.06 3.08 6.45 -2.91 -0.02 3.06 16 7 C 0.01 0.71 5.30 84.66 0.45 1.16 16 8 N -0.92 -52.43 11.32 21.45 0.24 -52.19 16 9 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.52 -20.59 2.82 -901.49 -2.54 -23.13 16 14 C 0.04 1.33 8.89 127.69 1.13 2.47 16 15 C 0.06 1.90 4.42 86.30 0.38 2.28 16 16 C -0.11 -3.04 1.00 -51.48 -0.05 -3.09 16 17 C -0.11 -2.83 8.40 71.98 0.60 -2.23 16 18 C 0.04 1.06 6.11 72.30 0.44 1.51 16 19 O -0.40 -11.09 12.38 -148.98 -1.84 -12.93 16 20 C 0.04 1.03 8.37 72.29 0.60 1.63 16 21 H 0.06 2.45 6.65 -2.39 -0.02 2.44 16 22 H 0.03 1.34 7.44 -2.39 -0.02 1.32 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 3.09 6.06 -2.39 -0.01 3.08 16 25 H 0.03 1.26 6.12 -2.39 -0.01 1.25 16 26 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 27 H 0.06 2.30 6.27 -2.39 -0.01 2.28 16 28 H 0.08 2.31 5.11 -2.39 -0.01 2.30 16 29 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.07 2.52 5.60 -2.39 -0.01 2.51 16 31 H 0.02 0.67 7.89 -2.39 -0.02 0.65 16 32 H 0.06 1.55 7.83 -2.39 -0.02 1.53 16 33 H 0.06 1.41 8.09 -2.38 -0.02 1.39 16 34 H 0.06 1.86 7.63 -2.39 -0.02 1.84 16 35 H 0.08 1.97 7.98 -2.39 -0.02 1.95 16 36 H 0.10 2.32 7.60 -2.39 -0.02 2.30 16 37 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16 38 H 0.09 1.85 8.10 -2.38 -0.02 1.83 16 Total: -1.00 -58.32 288.68 3.56 -54.76 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.02 Total: 8.67 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 4.66 Total: -20.41 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -2.30 Total: -75.32 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -1.84 Total: -12.93 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -58.32 3.56 -54.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702968160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.680 kcal (2) G-P(sol) polarization free energy of solvation -58.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds