Wall clock time and date at job start Sun Mar 29 2020 21:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47340 * 2 1 4 4 H 1.08999 * 109.47631 * 179.60563 * 3 2 1 5 5 C 1.50704 * 109.47179 * 299.60631 * 3 2 1 6 6 H 1.08001 * 119.99961 * 119.99805 * 5 3 2 7 7 C 1.37875 * 120.00113 * 300.00414 * 5 3 2 8 8 N 1.31519 * 119.99692 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00048 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46961 * 89.99943 * 9 7 5 11 11 H 1.48506 * 109.46909 * 209.99511 * 9 7 5 12 12 H 1.48493 * 109.47149 * 329.99764 * 9 7 5 13 13 N 1.46906 * 109.47406 * 59.60737 * 3 2 1 14 14 C 1.46898 * 110.99832 * 86.28076 * 13 3 2 15 15 C 1.53005 * 109.46952 * 185.01070 * 14 13 3 16 16 C 1.53778 * 113.60983 * 272.49784 * 15 14 13 17 17 C 1.53782 * 87.08220 * 220.01787 * 16 15 14 18 18 O 1.42901 * 113.68947 * 270.87715 * 17 16 15 19 19 C 1.42899 * 113.99652 * 247.52838 * 18 17 16 20 20 C 1.53775 * 113.61496 * 175.00218 * 15 14 13 21 21 H 1.09000 * 109.47199 * 295.92146 * 1 2 3 22 22 H 1.08996 * 109.46703 * 55.92397 * 1 2 3 23 23 H 1.09002 * 109.46907 * 175.92103 * 1 2 3 24 24 H 1.08993 * 109.47422 * 239.99357 * 2 1 3 25 25 H 1.09003 * 109.46967 * 119.99415 * 2 1 3 26 26 H 0.96997 * 119.99770 * 180.02562 * 8 7 5 27 27 H 1.00897 * 111.00132 * 210.23943 * 13 3 2 28 28 H 1.09004 * 109.46988 * 305.00525 * 14 13 3 29 29 H 1.08995 * 109.47169 * 65.00701 * 14 13 3 30 30 H 1.09000 * 112.84994 * 43.80171 * 15 14 13 31 31 H 1.08997 * 113.61885 * 334.56480 * 16 15 14 32 32 H 1.08999 * 113.61865 * 105.47057 * 16 15 14 33 33 H 1.09000 * 113.61656 * 139.97856 * 17 16 15 34 34 H 1.09004 * 109.47273 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47536 * 300.00142 * 19 18 17 36 36 H 1.08999 * 109.46999 * 60.00090 * 19 18 17 37 37 H 1.09005 * 113.61376 * 254.52737 * 20 15 14 38 38 H 1.09000 * 113.61812 * 25.42516 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4425 0.0071 5 6 1.5457 2.1501 -1.2353 6 1 0.9241 3.0284 -1.1423 7 6 1.8868 1.6761 -2.4843 8 7 2.6439 0.6068 -2.5976 9 14 1.2734 2.5528 -4.0155 10 1 2.2539 3.5939 -4.4160 11 1 1.1158 1.5709 -5.1184 12 1 -0.0367 3.1906 -3.7295 13 7 1.5426 2.1378 1.1947 14 6 2.4353 1.9193 2.3407 15 6 1.8227 2.5517 3.5921 16 6 2.1909 4.0333 3.7766 17 6 2.3309 3.7303 5.2778 18 8 1.1152 3.8900 6.0116 19 6 1.1336 4.9787 6.9369 20 6 2.6215 2.2745 4.8765 21 1 -0.3633 0.4492 0.9243 22 1 -0.3632 0.5758 -0.8512 23 1 -0.3633 -1.0251 -0.0731 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.8842 0.2735 -3.4763 27 1 1.4196 3.1229 1.0147 28 1 2.5653 0.8490 2.5011 29 1 3.4038 2.3769 2.1393 30 1 0.7559 2.3502 3.6893 31 1 3.1295 4.3129 3.2982 32 1 1.3756 4.7182 3.5437 33 1 3.1776 4.2311 5.7472 34 1 0.1752 5.0330 7.4533 35 1 1.9304 4.8239 7.6644 36 1 1.3091 5.9101 6.3986 37 1 2.1539 1.5393 5.5314 38 1 3.6779 2.0731 4.6988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703128506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:02 Heat of formation + Delta-G solvation = -34.640014 kcal Electronic energy + Delta-G solvation = -16121.985725 eV Core-core repulsion = 13578.914414 eV Total energy + Delta-G solvation = -2543.071310 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.49896 -36.61450 -35.39925 -32.32563 -30.54782 -27.55115 -26.54414 -25.58842 -24.92952 -23.04224 -21.78082 -19.26046 -18.89711 -16.65842 -16.15048 -15.47134 -15.22609 -14.85305 -14.60716 -13.77183 -13.63689 -13.03075 -12.88847 -12.49083 -12.29253 -11.93780 -11.81281 -11.57231 -11.29823 -10.92800 -10.86887 -10.49772 -10.37403 -10.26368 -10.09039 -9.75078 -9.56685 -9.42195 -9.26625 -8.71332 -8.42456 -7.12580 -5.97936 -4.03197 3.31193 3.38262 3.42107 3.63785 4.43219 4.69432 4.80451 4.98268 5.03421 5.20359 5.26922 5.33180 5.43754 5.49977 5.73249 5.83802 5.92507 6.02690 6.12846 6.29248 6.36467 6.52921 6.63316 6.75502 6.78485 6.92600 7.21669 7.30656 7.40665 7.56361 7.80808 7.84593 7.91772 8.33860 8.48187 8.76442 9.07717 9.61515 11.07984 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041671 B = 0.005337 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.769633 B = 5245.393708 C = 5506.423140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.215 3.785 4 H -0.002 1.002 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.685 5.685 14 C 0.070 3.930 15 C -0.093 4.093 16 C -0.156 4.156 17 C 0.061 3.939 18 O -0.368 6.368 19 C 0.032 3.968 20 C -0.138 4.138 21 H 0.042 0.958 22 H 0.055 0.945 23 H 0.012 0.988 24 H 0.085 0.915 25 H 0.009 0.991 26 H 0.260 0.740 27 H 0.329 0.671 28 H 0.062 0.938 29 H 0.016 0.984 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 5.635 14.385 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.107 3.893 4 H 0.016 0.984 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.315 5.315 14 C -0.060 4.060 15 C -0.112 4.112 16 C -0.194 4.194 17 C 0.003 3.997 18 O -0.287 6.287 19 C -0.065 4.065 20 C -0.176 4.176 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.031 0.969 24 H 0.104 0.896 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.289 4.876 14.380 15.187 hybrid contribution 0.730 1.184 -1.078 1.760 sum 0.441 6.060 13.303 14.625 Atomic orbital electron populations 1.21444 0.97557 0.97311 1.01358 1.21422 0.95007 0.98327 0.99320 1.19119 0.92783 0.91506 0.85892 0.98424 1.21215 1.31447 1.11867 0.90429 0.92369 1.24890 0.95106 0.95003 0.98899 1.69892 1.36727 1.22727 1.23511 0.86589 0.79227 0.79319 0.82823 1.20871 1.21255 1.19863 1.60649 1.48867 1.15821 1.06188 1.21875 0.93456 0.99687 0.91004 1.22498 1.00635 0.94364 0.93689 1.23530 1.02139 0.98414 0.95283 1.23114 0.86467 0.97973 0.92176 1.87901 1.35539 1.50565 1.54660 1.22775 1.02122 0.89516 0.92071 1.23238 1.00872 0.95476 0.97974 0.93890 0.92593 0.96860 0.89629 0.97247 0.93025 0.85434 0.91927 0.96581 0.88351 0.89646 0.91029 0.91468 0.89772 0.94249 0.94112 0.90885 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 9.52 37.16 0.35 -2.41 16 2 C -0.10 -2.55 5.59 -26.74 -0.15 -2.70 16 3 C 0.21 5.44 2.30 -68.86 -0.16 5.28 16 4 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 5 C -0.51 -13.89 7.28 -34.44 -0.25 -14.14 16 6 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.44 11.32 55.43 0.63 -24.82 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.68 -14.71 5.58 -107.95 -0.60 -15.32 16 14 C 0.07 1.28 5.29 -3.82 -0.02 1.26 16 15 C -0.09 -1.43 3.88 -89.81 -0.35 -1.77 16 16 C -0.16 -2.11 7.46 -25.92 -0.19 -2.31 16 17 C 0.06 0.74 4.37 -25.92 -0.11 0.63 16 18 O -0.37 -4.83 10.64 -35.23 -0.37 -5.20 16 19 C 0.03 0.29 10.85 101.05 1.10 1.39 16 20 C -0.14 -1.77 7.47 -25.92 -0.19 -1.96 16 21 H 0.04 0.95 7.72 -51.93 -0.40 0.55 16 22 H 0.06 1.38 7.09 -51.93 -0.37 1.02 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 25 H 0.01 0.21 7.48 -51.93 -0.39 -0.18 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.33 6.98 8.25 -39.29 -0.32 6.66 16 28 H 0.06 1.19 7.43 -51.93 -0.39 0.81 16 29 H 0.02 0.30 7.84 -51.93 -0.41 -0.11 16 30 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 31 H 0.09 1.11 7.90 -51.93 -0.41 0.70 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -28.68 304.18 -7.59 -36.27 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.73 Total: 3.28 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -0.07 Total: -15.10 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.03 Total: -40.13 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.37 Total: -5.20 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.68 -7.59 -36.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703128506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.628 kcal (2) G-P(sol) polarization free energy of solvation -28.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds