Wall clock time and date at job start Sun Mar 29 2020 21:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46711 * 2 1 4 4 H 1.08998 * 109.47243 * 302.86239 * 3 2 1 5 5 C 1.50701 * 109.47000 * 182.86049 * 3 2 1 6 6 H 1.08000 * 120.00207 * 239.99690 * 5 3 2 7 7 C 1.37879 * 120.00140 * 60.00378 * 5 3 2 8 8 N 1.31516 * 119.99551 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00106 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47076 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46995 * 119.99581 * 9 7 5 12 12 H 1.48499 * 109.46513 * 239.99349 * 9 7 5 13 13 N 1.46900 * 109.47332 * 62.86196 * 3 2 1 14 14 C 1.46845 * 111.00051 * 62.60378 * 13 3 2 15 15 C 1.53040 * 109.52372 * 185.84238 * 14 13 3 16 16 C 1.53118 * 109.27699 * 300.81965 * 15 14 13 17 17 H 1.09011 * 109.52116 * 297.74850 * 16 15 14 18 18 O 1.42897 * 109.57817 * 177.59534 * 16 15 14 19 19 C 1.53117 * 109.16298 * 57.65044 * 16 15 14 20 20 C 1.46851 * 111.00054 * 186.81099 * 13 3 2 21 21 H 1.09001 * 109.45379 * 294.17122 * 20 13 3 22 22 C 1.52999 * 109.46243 * 54.14376 * 20 13 3 23 23 H 1.08997 * 109.47006 * 60.00432 * 1 2 3 24 24 H 1.09009 * 109.46785 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47635 * 299.99846 * 1 2 3 26 26 H 1.08988 * 109.47856 * 239.99670 * 2 1 3 27 27 H 1.09006 * 109.46991 * 119.99620 * 2 1 3 28 28 H 0.97001 * 119.99684 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.46805 * 65.82187 * 14 13 3 30 30 H 1.09003 * 109.45121 * 305.84487 * 14 13 3 31 31 H 1.09000 * 109.50297 * 180.87618 * 15 14 13 32 32 H 1.09005 * 109.53688 * 60.77563 * 15 14 13 33 33 H 0.96704 * 114.00228 * 60.27972 * 18 16 15 34 34 H 1.09005 * 109.50262 * 182.40644 * 19 16 15 35 35 H 1.09001 * 109.49935 * 62.28848 * 19 16 15 36 36 H 1.08996 * 109.47266 * 180.02562 * 22 20 13 37 37 H 1.08998 * 109.46980 * 300.05833 * 22 20 13 38 38 H 1.09002 * 109.46958 * 60.05390 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6353 1.9709 -0.8632 5 6 3.5453 1.4432 -0.0709 6 1 4.1230 1.8976 0.7204 7 6 4.1851 0.8638 -1.1461 8 7 3.4815 0.3102 -2.1095 9 14 6.0510 0.8640 -1.2336 10 1 6.6027 1.5440 -0.0344 11 1 6.5445 -0.5358 -1.2804 12 1 6.4890 1.5844 -2.4561 13 7 1.6075 2.1148 1.2325 14 6 2.1852 1.4659 2.4164 15 6 1.6009 2.0974 3.6820 16 6 1.9181 3.5954 3.6922 17 1 2.9984 3.7388 3.7187 18 8 1.3275 4.2020 4.8433 19 6 1.3475 4.2385 2.4252 20 6 1.9391 3.5449 1.1960 21 1 3.0223 3.6666 1.1965 22 6 1.3563 4.1711 -0.0725 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 1.8934 -0.5138 -0.8898 27 1 1.8934 -0.5138 0.8901 28 1 3.9317 -0.0978 -2.8658 29 1 3.2672 1.5974 2.4111 30 1 1.9485 0.4020 2.3989 31 1 2.0415 1.6261 4.5606 32 1 0.5204 1.9541 3.6955 33 1 1.6437 3.8423 5.6835 34 1 1.6070 5.2971 2.4059 35 1 0.2630 4.1289 2.4182 36 1 1.6027 5.2325 -0.0999 37 1 1.7775 3.6771 -0.9480 38 1 0.2730 4.0499 -0.0729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705275673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:15 Heat of formation + Delta-G solvation = -60.908915 kcal Electronic energy + Delta-G solvation = -17290.417763 eV Core-core repulsion = 14746.207348 eV Total energy + Delta-G solvation = -2544.210415 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.02839 -36.50462 -33.83348 -31.88369 -31.50713 -29.88179 -26.69475 -26.09024 -23.43889 -22.49429 -20.95622 -19.61866 -18.77158 -16.86926 -16.16373 -15.50173 -14.57672 -14.46796 -14.05034 -13.63857 -13.35838 -12.98126 -12.82711 -11.94787 -11.75491 -11.53711 -11.51886 -11.28475 -11.18580 -11.04842 -10.83369 -10.58829 -10.37476 -10.17357 -10.09365 -9.82399 -9.66181 -9.55471 -9.18433 -8.99270 -8.33202 -7.09355 -5.99246 -4.12425 3.23877 3.32975 3.35676 4.38122 4.45606 4.94963 5.23143 5.25836 5.29739 5.54600 5.73794 5.94051 6.06285 6.09016 6.21897 6.26705 6.35613 6.37301 6.47844 6.48039 6.56875 6.61458 6.71779 6.80326 6.94284 6.99159 7.12744 7.21804 7.37882 7.64006 7.76620 7.83430 8.01523 8.17639 8.34920 8.49222 8.98201 9.55026 10.99518 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026249 B = 0.009592 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.439225 B = 2918.511434 C = 3246.974077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.209 3.791 4 H 0.049 0.951 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.529 5.529 14 C 0.063 3.937 15 C -0.147 4.147 16 C 0.103 3.897 17 H 0.047 0.953 18 O -0.573 6.573 19 C -0.101 4.101 20 C 0.092 3.908 21 H 0.042 0.958 22 C -0.140 4.140 23 H 0.038 0.962 24 H 0.024 0.976 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.371 0.629 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 3.641 8.004 9.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.103 3.897 4 H 0.067 0.933 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.254 5.254 14 C -0.065 4.065 15 C -0.185 4.185 16 C 0.045 3.955 17 H 0.065 0.935 18 O -0.378 6.378 19 C -0.139 4.139 20 C -0.017 4.017 21 H 0.060 0.940 22 C -0.198 4.198 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.217 0.783 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.778 3.854 7.380 9.142 hybrid contribution 2.379 -0.410 0.271 2.430 sum -1.399 3.443 7.650 8.505 Atomic orbital electron populations 1.21708 0.98858 0.98324 1.00663 1.21629 0.92218 0.99329 1.01899 1.19387 0.92637 0.90908 0.86776 0.93340 1.21766 0.92830 1.37248 1.06104 0.92716 1.24897 0.97762 0.95118 0.95620 1.69883 1.34772 1.37852 1.09836 0.86661 0.86478 0.77688 0.77904 1.20033 1.21050 1.21044 1.62431 1.58332 1.00813 1.03840 1.21831 0.96967 0.98668 0.89062 1.22346 1.02285 0.95425 0.98448 1.21927 0.95599 0.92197 0.85794 0.93459 1.86500 1.70110 1.65040 1.16184 1.21622 1.01517 0.98540 0.92257 1.21273 0.97603 0.89662 0.93154 0.93976 1.21820 1.00783 0.98787 0.98397 0.94255 0.95717 0.93293 0.89053 0.94960 0.92980 0.94557 0.90822 0.92655 0.91050 0.78338 0.92144 0.91079 0.93773 0.90828 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.78 37.16 0.36 -2.42 16 2 C -0.11 -2.61 5.04 -26.73 -0.13 -2.75 16 3 C 0.21 4.95 1.40 -68.86 -0.10 4.86 16 4 H 0.05 1.26 5.82 -51.93 -0.30 0.96 16 5 C -0.54 -14.02 7.20 -34.44 -0.25 -14.27 16 6 H 0.05 1.45 5.84 -52.49 -0.31 1.14 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.88 -24.38 11.30 55.43 0.63 -23.75 16 9 Si 0.88 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.53 -10.83 3.82 -220.14 -0.84 -11.68 16 14 C 0.06 1.21 4.80 -3.83 -0.02 1.19 16 15 C -0.15 -2.31 5.72 -26.65 -0.15 -2.46 16 16 C 0.10 1.61 3.54 -26.61 -0.09 1.52 16 17 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 18 O -0.57 -8.22 13.33 -35.23 -0.47 -8.69 16 19 C -0.10 -1.70 5.03 -26.65 -0.13 -1.83 16 20 C 0.09 1.76 2.13 -67.72 -0.14 1.62 16 21 H 0.04 0.89 7.08 -51.93 -0.37 0.52 16 22 C -0.14 -2.57 8.79 37.16 0.33 -2.24 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 25 H 0.05 0.96 7.69 -51.93 -0.40 0.56 16 26 H 0.09 2.38 6.00 -51.94 -0.31 2.07 16 27 H 0.03 0.74 6.20 -51.93 -0.32 0.42 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.04 0.75 6.53 -51.93 -0.34 0.42 16 30 H 0.07 1.45 6.03 -51.93 -0.31 1.14 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.37 3.64 9.09 45.56 0.41 4.05 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.53 6.18 -51.93 -0.32 1.21 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 286.06 15.07 4.31 4.31 Total: -1.00 -27.51 286.06 -7.33 -34.84 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.51 Total: 4.20 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.43 Total: -15.06 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.22 Total: -35.43 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.47 Total: -8.69 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.51 -7.33 -34.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705275673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.071 kcal (2) G-P(sol) polarization free energy of solvation -27.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds