Wall clock time and date at job start Sun Mar 29 2020 21:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46711 * 2 1 4 4 H 1.08998 * 109.47243 * 302.86239 * 3 2 1 5 5 C 1.50701 * 109.47000 * 182.86049 * 3 2 1 6 6 H 1.08000 * 120.00207 * 239.99690 * 5 3 2 7 7 C 1.37879 * 120.00140 * 60.00378 * 5 3 2 8 8 N 1.31516 * 119.99551 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00106 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47076 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46995 * 119.99581 * 9 7 5 12 12 H 1.48499 * 109.46513 * 239.99349 * 9 7 5 13 13 N 1.46900 * 109.47332 * 62.86196 * 3 2 1 14 14 C 1.46845 * 111.00051 * 62.60378 * 13 3 2 15 15 C 1.53040 * 109.52372 * 185.84238 * 14 13 3 16 16 C 1.53118 * 109.27699 * 300.81965 * 15 14 13 17 17 H 1.09011 * 109.52116 * 297.74850 * 16 15 14 18 18 O 1.42897 * 109.57817 * 177.59534 * 16 15 14 19 19 C 1.53117 * 109.16298 * 57.65044 * 16 15 14 20 20 C 1.46851 * 111.00054 * 186.81099 * 13 3 2 21 21 H 1.09001 * 109.45379 * 294.17122 * 20 13 3 22 22 C 1.52999 * 109.46243 * 54.14376 * 20 13 3 23 23 H 1.08997 * 109.47006 * 60.00432 * 1 2 3 24 24 H 1.09009 * 109.46785 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47635 * 299.99846 * 1 2 3 26 26 H 1.08988 * 109.47856 * 239.99670 * 2 1 3 27 27 H 1.09006 * 109.46991 * 119.99620 * 2 1 3 28 28 H 0.97001 * 119.99684 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.46805 * 65.82187 * 14 13 3 30 30 H 1.09003 * 109.45121 * 305.84487 * 14 13 3 31 31 H 1.09000 * 109.50297 * 180.87618 * 15 14 13 32 32 H 1.09005 * 109.53688 * 60.77563 * 15 14 13 33 33 H 0.96704 * 114.00228 * 60.27972 * 18 16 15 34 34 H 1.09005 * 109.50262 * 182.40644 * 19 16 15 35 35 H 1.09001 * 109.49935 * 62.28848 * 19 16 15 36 36 H 1.08996 * 109.47266 * 180.02562 * 22 20 13 37 37 H 1.08998 * 109.46980 * 300.05833 * 22 20 13 38 38 H 1.09002 * 109.46958 * 60.05390 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6353 1.9709 -0.8632 5 6 3.5453 1.4432 -0.0709 6 1 4.1230 1.8976 0.7204 7 6 4.1851 0.8638 -1.1461 8 7 3.4815 0.3102 -2.1095 9 14 6.0510 0.8640 -1.2336 10 1 6.6027 1.5440 -0.0344 11 1 6.5445 -0.5358 -1.2804 12 1 6.4890 1.5844 -2.4561 13 7 1.6075 2.1148 1.2325 14 6 2.1852 1.4659 2.4164 15 6 1.6009 2.0974 3.6820 16 6 1.9181 3.5954 3.6922 17 1 2.9984 3.7388 3.7187 18 8 1.3275 4.2020 4.8433 19 6 1.3475 4.2385 2.4252 20 6 1.9391 3.5449 1.1960 21 1 3.0223 3.6666 1.1965 22 6 1.3563 4.1711 -0.0725 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 1.8934 -0.5138 -0.8898 27 1 1.8934 -0.5138 0.8901 28 1 3.9317 -0.0978 -2.8658 29 1 3.2672 1.5974 2.4111 30 1 1.9485 0.4020 2.3989 31 1 2.0415 1.6261 4.5606 32 1 0.5204 1.9541 3.6955 33 1 1.6437 3.8423 5.6835 34 1 1.6070 5.2971 2.4059 35 1 0.2630 4.1289 2.4182 36 1 1.6027 5.2325 -0.0999 37 1 1.7775 3.6771 -0.9480 38 1 0.2730 4.0499 -0.0729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705275673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:14 Heat of formation + Delta-G solvation = -79.607812 kcal Electronic energy + Delta-G solvation = -17291.228608 eV Core-core repulsion = 14746.207348 eV Total energy + Delta-G solvation = -2545.021260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52950 -37.87497 -35.51504 -33.67629 -33.05619 -31.44451 -28.36867 -27.74634 -25.19107 -24.09336 -22.39251 -21.19084 -20.50397 -18.21339 -17.91606 -17.19962 -16.37311 -15.96671 -15.38249 -15.26905 -14.96420 -14.66067 -14.36694 -13.54949 -13.34389 -13.25223 -13.04574 -12.94349 -12.73472 -12.63947 -12.41933 -12.37451 -12.02674 -11.81067 -11.61366 -11.52384 -11.41186 -11.10174 -10.84748 -10.62379 -10.33095 -8.86624 -8.00119 -6.21976 1.34438 1.38376 1.46683 2.40366 3.17409 3.27591 3.43782 3.94241 3.95298 4.24662 4.30036 4.52092 4.58720 4.65809 4.69401 4.75000 4.79466 4.93455 4.95942 5.00953 5.07843 5.09621 5.18917 5.32844 5.35768 5.39675 5.45683 5.50545 5.56175 5.68498 5.85596 6.12600 6.26452 6.44696 6.75633 6.92461 7.00524 7.48378 8.94005 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026249 B = 0.009592 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.439225 B = 2918.511434 C = 3246.974077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 C 0.216 3.784 4 H 0.022 0.978 5 C -0.544 4.544 6 H 0.045 0.955 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.940 3.060 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.526 5.526 14 C 0.064 3.936 15 C -0.135 4.135 16 C 0.109 3.891 17 H 0.047 0.953 18 O -0.578 6.578 19 C -0.095 4.095 20 C 0.091 3.909 21 H 0.018 0.982 22 C -0.134 4.134 23 H 0.033 0.967 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.015 0.985 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.392 0.608 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 4.237 9.705 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.108 3.892 4 H 0.040 0.960 5 C -0.583 4.583 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.767 3.233 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.251 5.251 14 C -0.064 4.064 15 C -0.173 4.173 16 C 0.050 3.950 17 H 0.065 0.935 18 O -0.386 6.386 19 C -0.133 4.133 20 C -0.018 4.018 21 H 0.036 0.964 22 C -0.192 4.192 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.242 0.758 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.082 4.453 9.112 10.932 hybrid contribution 2.467 -0.573 -0.222 2.542 sum -1.615 3.880 8.889 9.833 Atomic orbital electron populations 1.21562 0.96342 0.99631 1.00734 1.21485 0.94422 0.98551 1.00228 1.19149 0.91288 0.91202 0.87515 0.95991 1.21979 0.94203 1.36536 1.05615 0.93637 1.25546 1.01409 0.95186 0.95576 1.70001 1.36060 1.38623 1.10256 0.85782 0.82160 0.77594 0.77729 1.19845 1.20773 1.20884 1.62413 1.58024 1.01539 1.03075 1.21844 0.95883 0.98574 0.90143 1.22251 1.02117 0.95589 0.97377 1.21728 0.95473 0.91778 0.85979 0.93511 1.86454 1.70161 1.65083 1.16905 1.21514 1.01173 0.99012 0.91623 1.21323 0.96424 0.89072 0.94981 0.96365 1.21747 1.00897 0.99852 0.96665 0.94811 0.93799 0.92445 0.92093 0.95138 0.93059 0.96645 0.91622 0.89860 0.91044 0.75813 0.90847 0.91156 0.91346 0.94092 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.78 71.98 0.70 -4.26 16 2 C -0.11 -5.10 5.04 30.59 0.15 -4.94 16 3 C 0.22 10.42 1.40 44.17 0.06 10.48 16 4 H 0.02 1.20 5.82 -2.39 -0.01 1.18 16 5 C -0.54 -28.83 7.20 25.60 0.18 -28.65 16 6 H 0.05 2.45 5.84 -2.91 -0.02 2.44 16 7 C 0.02 1.22 5.30 84.65 0.45 1.67 16 8 N -0.91 -51.30 11.30 21.45 0.24 -51.06 16 9 Si 0.94 43.34 29.54 68.60 2.03 45.36 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.53 -21.43 3.82 -850.39 -3.25 -24.68 16 14 C 0.06 2.40 4.80 86.33 0.41 2.81 16 15 C -0.14 -3.90 5.72 30.65 0.18 -3.72 16 16 C 0.11 3.11 3.54 30.67 0.11 3.22 16 17 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 18 O -0.58 -14.48 13.33 -148.98 -1.99 -16.46 16 19 C -0.10 -2.98 5.03 30.64 0.15 -2.83 16 20 C 0.09 3.43 2.13 44.94 0.10 3.53 16 21 H 0.02 0.78 7.08 -2.39 -0.02 0.76 16 22 C -0.13 -4.87 8.79 71.98 0.63 -4.24 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.06 2.16 7.69 -2.39 -0.02 2.14 16 26 H 0.06 3.25 6.00 -2.39 -0.01 3.24 16 27 H 0.03 1.40 6.20 -2.38 -0.01 1.39 16 28 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.02 0.64 6.53 -2.39 -0.02 0.62 16 30 H 0.07 2.54 6.03 -2.39 -0.01 2.52 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 32 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.39 6.12 9.09 -74.05 -0.67 5.45 16 34 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.04 1.74 6.18 -2.39 -0.01 1.72 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -58.92 286.06 0.53 -58.39 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.36 Total: 15.37 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 3.13 Total: -26.93 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -3.01 Total: -75.74 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.99 Total: -16.46 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -58.92 0.53 -58.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705275673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.215 kcal (2) G-P(sol) polarization free energy of solvation -58.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds