Wall clock time and date at job start Sun Mar 29 2020 21:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 H 1.09001 * 109.47216 * 325.10277 * 3 2 1 5 5 C 1.50695 * 109.46931 * 205.09821 * 3 2 1 6 6 H 1.08000 * 120.00350 * 246.09130 * 5 3 2 7 7 C 1.37882 * 119.99985 * 66.09936 * 5 3 2 8 8 N 1.31515 * 119.99786 * 187.72487 * 7 5 3 9 9 Si 1.86798 * 119.99895 * 7.71711 * 7 5 3 10 10 H 1.48504 * 109.47113 * 95.25716 * 9 7 5 11 11 H 1.48497 * 109.47361 * 215.25474 * 9 7 5 12 12 H 1.48504 * 109.47251 * 335.25490 * 9 7 5 13 13 N 1.46899 * 109.46922 * 85.09921 * 3 2 1 14 14 C 1.46854 * 110.99909 * 58.07951 * 13 3 2 15 15 C 1.53039 * 109.51935 * 174.15923 * 14 13 3 16 16 C 1.53116 * 109.28206 * 59.17957 * 15 14 13 17 17 H 1.09000 * 109.51878 * 62.31218 * 16 15 14 18 18 O 1.42895 * 109.52450 * 182.43643 * 16 15 14 19 19 C 1.53119 * 109.16082 * 302.34217 * 16 15 14 20 20 C 1.46847 * 111.00402 * 293.87019 * 13 3 2 21 21 H 1.08996 * 109.46275 * 65.82456 * 20 13 3 22 22 C 1.53005 * 109.45843 * 305.85668 * 20 13 3 23 23 H 1.09001 * 109.47683 * 289.98569 * 1 2 3 24 24 H 1.09008 * 109.46805 * 49.98362 * 1 2 3 25 25 H 1.08999 * 109.47384 * 169.97946 * 1 2 3 26 26 H 1.08995 * 109.46779 * 240.00105 * 2 1 3 27 27 H 1.08994 * 109.46539 * 119.99935 * 2 1 3 28 28 H 0.96998 * 119.99615 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.45916 * 294.17481 * 14 13 3 30 30 H 1.08998 * 109.46216 * 54.15567 * 14 13 3 31 31 H 1.08999 * 109.49675 * 179.12131 * 15 14 13 32 32 H 1.09003 * 109.50289 * 299.19562 * 15 14 13 33 33 H 0.96700 * 114.00378 * 299.99966 * 18 16 15 34 34 H 1.09002 * 109.50542 * 177.58997 * 19 16 15 35 35 H 1.08999 * 109.50345 * 297.67719 * 19 16 15 36 36 H 1.08995 * 109.47388 * 63.11245 * 22 20 13 37 37 H 1.09000 * 109.46750 * 183.11410 * 22 20 13 38 38 H 1.08999 * 109.47010 * 303.11343 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3665 2.0660 -0.5879 5 6 3.4205 1.4871 -0.6027 6 1 4.2684 1.7573 0.0092 7 6 3.6011 1.1832 -1.9354 8 7 4.8164 1.0732 -2.4259 9 14 2.1196 0.9274 -3.0441 10 1 1.8027 2.1964 -3.7474 11 1 2.4248 -0.1288 -4.0422 12 1 0.9535 0.5114 -2.2240 13 7 2.0917 1.9435 1.3799 14 6 2.9560 1.0990 2.2144 15 6 3.1023 1.7298 3.6011 16 6 1.7187 1.8674 4.2425 17 1 1.2783 0.8790 4.3739 18 8 1.8432 2.5076 5.5139 19 6 0.8236 2.7107 3.3303 20 6 0.7433 2.0516 1.9515 21 1 0.3096 1.0564 2.0494 22 6 -0.1341 2.9016 1.0304 23 1 -0.3634 0.3512 0.9658 24 1 -0.3633 0.6609 -0.7871 25 1 -0.3634 -1.0120 -0.1788 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 4.9434 0.8598 -3.3635 29 1 2.5118 0.1084 2.3110 30 1 3.9380 1.0130 1.7493 31 1 3.7311 1.0948 4.2251 32 1 3.5598 2.7146 3.5065 33 1 2.4020 2.0297 6.1419 34 1 -0.1756 2.7766 3.7608 35 1 1.2442 3.7115 3.2320 36 1 -0.2374 2.4041 0.0661 37 1 -1.1184 3.0280 1.4812 38 1 0.3283 3.8783 0.8876 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705275674.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:16 Heat of formation + Delta-G solvation = -41.572511 kcal Electronic energy + Delta-G solvation = -17397.943566 eV Core-core repulsion = 14854.571640 eV Total energy + Delta-G solvation = -2543.371926 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.48377 -36.82336 -33.80666 -32.28394 -31.73859 -30.07935 -27.41867 -26.36647 -23.32519 -22.45393 -21.29879 -20.13472 -18.76430 -16.96797 -16.77152 -15.65997 -14.97227 -14.77001 -14.21841 -13.70005 -13.24184 -13.19693 -12.92562 -12.47513 -12.06816 -11.87702 -11.70278 -11.49334 -11.37361 -11.20494 -10.88264 -10.74848 -10.66603 -10.48356 -10.12459 -10.02369 -9.67008 -9.47846 -9.38568 -8.97064 -8.45346 -7.22207 -6.05647 -4.02182 3.28717 3.38802 3.41193 4.33927 4.43734 4.70421 5.11338 5.15833 5.23656 5.38389 5.51119 5.61752 5.79193 5.81722 5.87520 5.93522 5.95853 6.07560 6.15918 6.18348 6.27819 6.36334 6.50536 6.52260 6.58968 6.63943 6.76100 6.78309 6.86740 7.00237 7.30766 7.66083 7.75525 8.00574 8.16418 8.68639 9.02650 9.57924 11.06967 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035170 B = 0.009421 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.942218 B = 2971.473775 C = 3374.017537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.159 4.159 3 C 0.187 3.813 4 H 0.045 0.955 5 C -0.504 4.504 6 H 0.079 0.921 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.855 3.145 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.241 1.241 13 N -0.515 5.515 14 C 0.062 3.938 15 C -0.148 4.148 16 C 0.103 3.897 17 H 0.046 0.954 18 O -0.572 6.572 19 C -0.102 4.102 20 C 0.072 3.928 21 H 0.046 0.954 22 C -0.150 4.150 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.262 0.738 29 H 0.026 0.974 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.372 0.628 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 -0.745 10.202 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.198 4.198 3 C 0.080 3.920 4 H 0.062 0.938 5 C -0.542 4.542 6 H 0.097 0.903 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.682 3.318 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.165 1.165 13 N -0.239 5.239 14 C -0.066 4.066 15 C -0.186 4.186 16 C 0.045 3.955 17 H 0.064 0.936 18 O -0.377 6.377 19 C -0.139 4.139 20 C -0.037 4.037 21 H 0.064 0.936 22 C -0.207 4.207 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.219 0.781 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.385 0.132 9.728 12.843 hybrid contribution -0.572 -1.484 -0.558 1.685 sum -8.957 -1.352 9.170 12.890 Atomic orbital electron populations 1.22397 0.98359 1.00162 1.01271 1.22687 0.93366 1.02229 1.01545 1.19802 0.97876 0.88971 0.85387 0.93781 1.20967 0.92118 1.46021 0.95087 0.90290 1.24890 0.95393 0.94783 0.97928 1.69915 1.20668 1.48902 1.14295 0.87359 0.85322 0.78057 0.81095 1.20868 1.21650 1.16472 1.62149 1.07886 1.50901 1.03009 1.21976 0.99809 0.93312 0.91550 1.22349 0.96644 1.02448 0.97162 1.21918 0.95843 0.94883 0.82855 0.93609 1.86496 1.73164 1.53348 1.24708 1.21585 0.98534 1.00265 0.93563 1.21777 0.91336 0.97621 0.92964 0.93630 1.21987 0.97878 1.00930 0.99899 0.92359 0.92900 0.94544 0.91984 0.92870 0.92791 0.95617 0.88879 0.92287 0.90507 0.78137 0.91978 0.90617 0.91553 0.93264 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 7.88 37.16 0.29 -2.61 16 2 C -0.16 -3.29 4.19 -26.73 -0.11 -3.40 16 3 C 0.19 4.20 1.31 -68.87 -0.09 4.11 16 4 H 0.04 1.02 4.43 -51.93 -0.23 0.79 16 5 C -0.50 -13.67 8.45 -34.44 -0.29 -13.96 16 6 H 0.08 2.36 6.85 -52.49 -0.36 2.00 16 7 C 0.07 2.01 5.29 -17.82 -0.09 1.92 16 8 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 9 Si 0.85 20.56 25.67 -169.99 -4.36 16.19 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.24 -5.28 3.83 56.52 0.22 -5.06 16 13 N -0.52 -10.28 4.46 -220.14 -0.98 -11.26 16 14 C 0.06 1.14 4.75 -3.83 -0.02 1.13 16 15 C -0.15 -2.27 5.72 -26.65 -0.15 -2.43 16 16 C 0.10 1.49 3.54 -26.61 -0.09 1.40 16 17 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 18 O -0.57 -7.73 13.33 -35.23 -0.47 -8.20 16 19 C -0.10 -1.55 5.03 -26.65 -0.13 -1.69 16 20 C 0.07 1.20 1.76 -67.72 -0.12 1.08 16 21 H 0.05 0.76 5.02 -51.93 -0.26 0.50 16 22 C -0.15 -2.37 8.10 37.16 0.30 -2.07 16 23 H 0.06 0.93 4.47 -51.93 -0.23 0.70 16 24 H 0.05 0.94 5.79 -51.92 -0.30 0.64 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.40 5.27 -51.93 -0.27 1.12 16 27 H 0.05 1.07 5.52 -51.93 -0.29 0.78 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.03 0.47 6.12 -51.93 -0.32 0.15 16 30 H 0.09 1.97 6.31 -51.93 -0.33 1.64 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.37 3.38 9.08 45.56 0.41 3.79 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.12 4.28 -51.93 -0.22 0.89 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 268.08 15.07 4.04 4.04 Total: -1.00 -29.87 268.08 -6.61 -36.48 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.10 Total: 5.62 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -0.51 Total: -16.52 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.21 Total: -37.61 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.47 Total: -8.20 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.36 Total: 16.19 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.87 -6.61 -36.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705275674.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.093 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds