Wall clock time and date at job start Sun Mar 29 2020 21:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 H 1.09001 * 109.47216 * 325.10277 * 3 2 1 5 5 C 1.50695 * 109.46931 * 205.09821 * 3 2 1 6 6 H 1.08000 * 120.00350 * 246.09130 * 5 3 2 7 7 C 1.37882 * 119.99985 * 66.09936 * 5 3 2 8 8 N 1.31515 * 119.99786 * 187.72487 * 7 5 3 9 9 Si 1.86798 * 119.99895 * 7.71711 * 7 5 3 10 10 H 1.48504 * 109.47113 * 95.25716 * 9 7 5 11 11 H 1.48497 * 109.47361 * 215.25474 * 9 7 5 12 12 H 1.48504 * 109.47251 * 335.25490 * 9 7 5 13 13 N 1.46899 * 109.46922 * 85.09921 * 3 2 1 14 14 C 1.46854 * 110.99909 * 58.07951 * 13 3 2 15 15 C 1.53039 * 109.51935 * 174.15923 * 14 13 3 16 16 C 1.53116 * 109.28206 * 59.17957 * 15 14 13 17 17 H 1.09000 * 109.51878 * 62.31218 * 16 15 14 18 18 O 1.42895 * 109.52450 * 182.43643 * 16 15 14 19 19 C 1.53119 * 109.16082 * 302.34217 * 16 15 14 20 20 C 1.46847 * 111.00402 * 293.87019 * 13 3 2 21 21 H 1.08996 * 109.46275 * 65.82456 * 20 13 3 22 22 C 1.53005 * 109.45843 * 305.85668 * 20 13 3 23 23 H 1.09001 * 109.47683 * 289.98569 * 1 2 3 24 24 H 1.09008 * 109.46805 * 49.98362 * 1 2 3 25 25 H 1.08999 * 109.47384 * 169.97946 * 1 2 3 26 26 H 1.08995 * 109.46779 * 240.00105 * 2 1 3 27 27 H 1.08994 * 109.46539 * 119.99935 * 2 1 3 28 28 H 0.96998 * 119.99615 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.45916 * 294.17481 * 14 13 3 30 30 H 1.08998 * 109.46216 * 54.15567 * 14 13 3 31 31 H 1.08999 * 109.49675 * 179.12131 * 15 14 13 32 32 H 1.09003 * 109.50289 * 299.19562 * 15 14 13 33 33 H 0.96700 * 114.00378 * 299.99966 * 18 16 15 34 34 H 1.09002 * 109.50542 * 177.58997 * 19 16 15 35 35 H 1.08999 * 109.50345 * 297.67719 * 19 16 15 36 36 H 1.08995 * 109.47388 * 63.11245 * 22 20 13 37 37 H 1.09000 * 109.46750 * 183.11410 * 22 20 13 38 38 H 1.08999 * 109.47010 * 303.11343 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3665 2.0660 -0.5879 5 6 3.4205 1.4871 -0.6027 6 1 4.2684 1.7573 0.0092 7 6 3.6011 1.1832 -1.9354 8 7 4.8164 1.0732 -2.4259 9 14 2.1196 0.9274 -3.0441 10 1 1.8027 2.1964 -3.7474 11 1 2.4248 -0.1288 -4.0422 12 1 0.9535 0.5114 -2.2240 13 7 2.0917 1.9435 1.3799 14 6 2.9560 1.0990 2.2144 15 6 3.1023 1.7298 3.6011 16 6 1.7187 1.8674 4.2425 17 1 1.2783 0.8790 4.3739 18 8 1.8432 2.5076 5.5139 19 6 0.8236 2.7107 3.3303 20 6 0.7433 2.0516 1.9515 21 1 0.3096 1.0564 2.0494 22 6 -0.1341 2.9016 1.0304 23 1 -0.3634 0.3512 0.9658 24 1 -0.3633 0.6609 -0.7871 25 1 -0.3634 -1.0120 -0.1788 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 4.9434 0.8598 -3.3635 29 1 2.5118 0.1084 2.3110 30 1 3.9380 1.0130 1.7493 31 1 3.7311 1.0948 4.2251 32 1 3.5598 2.7146 3.5065 33 1 2.4020 2.0297 6.1419 34 1 -0.1756 2.7766 3.7608 35 1 1.2442 3.7115 3.2320 36 1 -0.2374 2.4041 0.0661 37 1 -1.1184 3.0280 1.4812 38 1 0.3283 3.8783 0.8876 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705275674.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:16 Heat of formation + Delta-G solvation = -65.135439 kcal Electronic energy + Delta-G solvation = -17398.965331 eV Core-core repulsion = 14854.571640 eV Total energy + Delta-G solvation = -2544.393691 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90442 -38.06440 -35.38918 -33.95736 -33.35396 -31.47493 -29.07954 -27.81521 -24.90440 -24.04898 -22.64321 -21.58651 -20.26133 -18.73846 -18.05948 -17.32725 -16.43066 -16.27834 -15.59930 -15.18586 -14.92228 -14.68388 -14.37499 -14.01372 -13.64123 -13.34335 -13.15126 -12.80864 -12.77995 -12.67016 -12.43006 -12.29232 -12.21292 -12.08193 -11.60790 -11.39299 -11.31786 -11.04381 -10.93303 -10.67212 -10.52040 -8.76338 -8.23701 -6.24236 1.36137 1.40366 1.50194 2.39566 3.10022 3.21993 3.35267 3.87878 3.91750 4.16241 4.22735 4.26582 4.35783 4.47371 4.49289 4.58809 4.61949 4.70574 4.88605 4.94528 4.98945 5.04544 5.09018 5.17399 5.17914 5.20036 5.30285 5.34551 5.39945 5.51056 5.66346 5.74038 6.13248 6.53392 6.80772 6.84773 6.92021 7.40321 8.92525 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035170 B = 0.009421 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.942218 B = 2971.473775 C = 3374.017537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.157 4.157 3 C 0.193 3.807 4 H 0.044 0.956 5 C -0.502 4.502 6 H 0.033 0.967 7 C 0.010 3.990 8 N -0.953 5.953 9 Si 0.919 3.081 10 H -0.284 1.284 11 H -0.294 1.294 12 H -0.205 1.205 13 N -0.535 5.535 14 C 0.065 3.935 15 C -0.140 4.140 16 C 0.111 3.889 17 H 0.064 0.936 18 O -0.580 6.580 19 C -0.100 4.100 20 C 0.072 3.928 21 H 0.058 0.942 22 C -0.149 4.149 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.262 0.738 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.393 0.607 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.504 -1.352 11.667 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.196 4.196 3 C 0.085 3.915 4 H 0.061 0.939 5 C -0.541 4.541 6 H 0.051 0.949 7 C -0.186 4.186 8 N -0.594 5.594 9 Si 0.743 3.257 10 H -0.210 1.210 11 H -0.221 1.221 12 H -0.127 1.127 13 N -0.259 5.259 14 C -0.063 4.063 15 C -0.178 4.178 16 C 0.053 3.947 17 H 0.081 0.919 18 O -0.388 6.388 19 C -0.138 4.138 20 C -0.036 4.036 21 H 0.075 0.925 22 C -0.207 4.207 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.242 0.758 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.605 -0.475 11.241 16.164 hybrid contribution 0.546 -1.247 -0.893 1.628 sum -11.059 -1.722 10.347 15.242 Atomic orbital electron populations 1.22325 0.95148 1.01608 1.02484 1.22536 0.96142 1.00188 1.00753 1.19578 0.94610 0.90436 0.86856 0.93868 1.21276 0.93495 1.44446 0.94841 0.94901 1.25772 0.98313 0.94845 0.99675 1.70083 1.23387 1.51290 1.14644 0.86340 0.82758 0.77622 0.78941 1.21021 1.22112 1.12653 1.62045 1.10410 1.51264 1.02227 1.21868 0.97594 0.94061 0.92792 1.22280 0.98351 1.01499 0.95661 1.21772 0.94409 0.95502 0.83066 0.91850 1.86457 1.73798 1.54034 1.24554 1.21561 0.99941 0.99281 0.93006 1.21879 0.89342 0.98549 0.93826 0.92504 1.21999 0.99256 0.99854 0.99560 0.90437 0.92880 0.92553 0.94088 0.92569 0.92949 0.94770 0.93020 0.89853 0.92493 0.75775 0.89715 0.92330 0.92439 0.90006 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 7.88 71.98 0.57 -4.36 16 2 C -0.16 -6.20 4.19 30.59 0.13 -6.07 16 3 C 0.19 8.60 1.31 44.17 0.06 8.66 16 4 H 0.04 1.95 4.43 -2.39 -0.01 1.94 16 5 C -0.50 -28.33 8.45 25.60 0.22 -28.12 16 6 H 0.03 2.10 6.85 -2.91 -0.02 2.08 16 7 C 0.01 0.60 5.29 84.66 0.45 1.04 16 8 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 9 Si 0.92 42.87 25.67 68.60 1.76 44.63 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.20 -8.24 3.83 99.48 0.38 -7.86 16 13 N -0.53 -21.06 4.46 -850.38 -3.79 -24.85 16 14 C 0.06 2.41 4.75 86.33 0.41 2.82 16 15 C -0.14 -4.12 5.72 30.65 0.18 -3.95 16 16 C 0.11 2.85 3.54 30.67 0.11 2.96 16 17 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 18 O -0.58 -13.73 13.33 -148.98 -1.99 -15.72 16 19 C -0.10 -2.76 5.03 30.65 0.15 -2.60 16 20 C 0.07 2.21 1.76 44.94 0.08 2.29 16 21 H 0.06 1.65 5.02 -2.39 -0.01 1.64 16 22 C -0.15 -4.28 8.10 71.98 0.58 -3.70 16 23 H 0.08 2.11 4.47 -2.39 -0.01 2.10 16 24 H 0.05 1.66 5.79 -2.38 -0.01 1.64 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.04 1.78 5.27 -2.39 -0.01 1.77 16 27 H 0.06 2.16 5.52 -2.39 -0.01 2.15 16 28 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.03 1.20 6.12 -2.39 -0.01 1.19 16 30 H 0.05 2.32 6.31 -2.39 -0.02 2.30 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.39 5.72 9.08 -74.06 -0.67 5.05 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.75 4.28 -2.39 -0.01 1.74 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -67.32 268.08 -0.73 -68.05 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.06 Total: 18.77 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 2.93 Total: -31.03 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -3.49 Total: -84.71 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -1.99 Total: -15.72 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.76 Total: 44.63 kcal Total: -67.32 -0.73 -68.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705275674.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.912 kcal (2) G-P(sol) polarization free energy of solvation -67.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds