Wall clock time and date at job start Sun Mar 29 2020 21:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47469 * 2 1 4 4 H 1.09001 * 109.46865 * 305.79972 * 3 2 1 5 5 C 1.50696 * 109.47082 * 185.79918 * 3 2 1 6 6 H 1.08003 * 119.99369 * 244.25985 * 5 3 2 7 7 C 1.37872 * 120.00181 * 64.25538 * 5 3 2 8 8 N 1.31519 * 119.99918 * 194.44508 * 7 5 3 9 9 Si 1.86800 * 120.00032 * 14.44764 * 7 5 3 10 10 H 1.48502 * 109.47039 * 92.67791 * 9 7 5 11 11 H 1.48493 * 109.47281 * 212.67689 * 9 7 5 12 12 H 1.48494 * 109.47243 * 332.67856 * 9 7 5 13 13 N 1.46900 * 109.46871 * 65.79479 * 3 2 1 14 14 C 1.46902 * 111.00384 * 260.90094 * 13 3 2 15 15 C 1.52994 * 109.47163 * 184.07630 * 14 13 3 16 16 C 1.52999 * 112.85492 * 294.00882 * 15 14 13 17 17 O 1.42901 * 109.47021 * 305.94511 * 16 15 14 18 18 C 1.53779 * 113.61255 * 65.20947 * 15 14 13 19 19 C 1.53775 * 87.08456 * 89.19721 * 18 15 14 20 20 C 1.53780 * 87.17519 * 25.38825 * 19 18 15 21 21 H 1.09005 * 109.46900 * 301.19893 * 1 2 3 22 22 H 1.09004 * 109.46399 * 61.19022 * 1 2 3 23 23 H 1.08994 * 109.47653 * 181.19366 * 1 2 3 24 24 H 1.08997 * 109.47153 * 239.99650 * 2 1 3 25 25 H 1.09001 * 109.46275 * 119.99906 * 2 1 3 26 26 H 0.97003 * 120.00060 * 179.97438 * 8 7 5 27 27 H 1.00903 * 110.99399 * 136.95318 * 13 3 2 28 28 H 1.09003 * 109.46457 * 64.07405 * 14 13 3 29 29 H 1.09001 * 109.46823 * 304.08240 * 14 13 3 30 30 H 1.08997 * 109.46886 * 65.94263 * 16 15 14 31 31 H 1.08995 * 109.47532 * 185.94579 * 16 15 14 32 32 H 0.96698 * 114.00422 * 179.97438 * 17 16 15 33 33 H 1.09003 * 113.61708 * 334.64424 * 18 15 14 34 34 H 1.09005 * 113.68959 * 203.75640 * 18 15 14 35 35 H 1.08996 * 113.61919 * 139.98107 * 19 18 15 36 36 H 1.09002 * 113.61604 * 270.79926 * 19 18 15 37 37 H 1.09001 * 113.60917 * 89.15802 * 20 19 18 38 38 H 1.08998 * 113.61597 * 220.06366 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5945 1.9854 -0.8335 5 6 3.5402 1.4448 -0.1436 6 1 4.1586 1.8232 0.6570 7 6 4.1232 0.9638 -1.2967 8 7 5.4111 0.6986 -1.3212 9 14 3.0837 0.6888 -2.8242 10 1 3.1232 1.9050 -3.6753 11 1 3.6206 -0.4667 -3.5869 12 1 1.6811 0.4094 -2.4247 13 7 1.6680 2.0934 1.2632 14 6 0.4663 2.9214 1.0949 15 6 0.1694 3.6608 2.4009 16 6 -0.2205 2.7188 3.5418 17 8 -1.3090 1.8917 3.1256 18 6 1.2499 4.6839 2.7889 19 6 0.4586 5.7141 1.9659 20 6 -0.7885 4.8540 2.2300 21 1 -0.3633 0.5324 0.8791 22 1 -0.3632 0.4953 -0.9005 23 1 -0.3634 -1.0273 0.0214 24 1 1.8934 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 5.8212 0.3598 -2.1323 27 1 2.4345 2.6386 1.6285 28 1 -0.3802 2.2848 0.8371 29 1 0.6327 3.6453 0.2971 30 1 0.6324 2.0925 3.8033 31 1 -0.5209 3.3048 4.4103 32 1 -1.6092 1.2676 3.8005 33 1 2.2333 4.4581 2.3765 34 1 1.2792 4.9068 3.8555 35 1 0.4143 6.7006 2.4274 36 1 0.7494 5.7507 0.9161 37 1 -1.3187 5.1226 3.1437 38 1 -1.4484 4.7651 1.3670 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717640877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:59 Heat of formation + Delta-G solvation = -36.853140 kcal Electronic energy + Delta-G solvation = -16872.033373 eV Core-core repulsion = 14328.866094 eV Total energy + Delta-G solvation = -2543.167279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.62572 -36.05722 -35.86406 -32.28667 -31.12927 -28.56231 -27.08508 -25.61469 -24.11943 -22.33197 -21.77868 -19.51833 -18.08554 -17.03882 -16.76022 -15.77451 -15.14935 -14.83917 -14.17066 -13.95308 -13.26143 -13.06371 -12.85024 -12.48058 -12.40545 -12.10093 -11.84033 -11.57561 -11.34334 -11.01223 -10.80662 -10.68086 -10.46423 -10.14820 -10.03092 -9.85194 -9.71318 -9.55108 -9.22194 -9.04933 -8.41759 -7.30687 -6.10801 -4.06055 3.29334 3.39017 3.44256 4.33832 4.43268 4.73948 4.82290 4.98799 5.09369 5.22388 5.39206 5.52771 5.62097 5.79246 5.81188 5.96048 5.98742 6.05241 6.16059 6.17906 6.23413 6.33149 6.40513 6.43856 6.58320 6.67976 6.78533 6.92200 7.13205 7.20047 7.52588 7.72745 7.88282 8.06115 8.44710 8.67757 8.97988 9.55827 11.02094 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.008281 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.960751 B = 3380.507719 C = 3763.543564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C 0.192 3.808 4 H 0.001 0.999 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.863 3.137 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.248 1.248 13 N -0.676 5.676 14 C 0.082 3.918 15 C -0.073 4.073 16 C 0.102 3.898 17 O -0.566 6.566 18 C -0.132 4.132 19 C -0.142 4.142 20 C -0.128 4.128 21 H 0.068 0.932 22 H 0.033 0.967 23 H 0.031 0.969 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.263 0.737 27 H 0.334 0.666 28 H 0.081 0.919 29 H 0.018 0.982 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.371 0.629 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.933 5.763 7.935 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C 0.083 3.917 4 H 0.018 0.982 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.690 3.310 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.307 5.307 14 C -0.047 4.047 15 C -0.074 4.074 16 C 0.024 3.976 17 O -0.370 6.370 18 C -0.170 4.170 19 C -0.180 4.180 20 C -0.166 4.166 21 H 0.087 0.913 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.153 0.847 28 H 0.099 0.901 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.216 0.784 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.041 5.490 7.494 15.208 hybrid contribution -0.004 0.256 -0.909 0.945 sum -12.045 5.746 6.584 14.881 Atomic orbital electron populations 1.21964 0.98487 0.99523 1.01111 1.21828 0.92853 0.99273 1.00513 1.19435 0.95243 0.90878 0.86102 0.98172 1.21231 0.89548 1.42825 1.03186 0.90743 1.24898 0.94743 0.94166 0.98781 1.69981 1.11217 1.43693 1.28098 0.87207 0.82544 0.77792 0.83477 1.20926 1.21369 1.17237 1.60533 1.06263 1.33572 1.30342 1.21820 0.95840 0.94631 0.92459 1.21921 0.96278 0.92769 0.96413 1.21995 0.89006 0.92064 0.94511 1.86490 1.52429 1.53888 1.44193 1.22928 0.98469 0.95684 0.99872 1.22823 0.97057 0.97407 1.00684 1.22959 0.96233 0.95835 1.01562 0.91300 0.94768 0.94945 0.93440 0.92474 0.92715 0.84701 0.90091 0.96352 0.92614 0.95051 0.78392 0.90668 0.90380 0.91858 0.90128 0.90535 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.10 37.16 0.34 -2.68 16 2 C -0.11 -2.43 4.84 -26.73 -0.13 -2.56 16 3 C 0.19 4.60 1.75 -68.87 -0.12 4.48 16 4 H 0.00 0.02 6.27 -51.93 -0.33 -0.31 16 5 C -0.53 -14.80 9.02 -34.44 -0.31 -15.12 16 6 H 0.07 2.23 7.70 -52.48 -0.40 1.83 16 7 C 0.08 2.22 5.34 -17.82 -0.10 2.12 16 8 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 9 Si 0.86 21.54 25.76 -169.99 -4.38 17.16 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.25 -5.91 5.42 56.52 0.31 -5.61 16 13 N -0.68 -13.84 6.00 -107.95 -0.65 -14.49 16 14 C 0.08 1.47 4.31 -3.83 -0.02 1.45 16 15 C -0.07 -1.06 0.84 -153.61 -0.13 -1.19 16 16 C 0.10 1.37 6.29 37.16 0.23 1.60 16 17 O -0.57 -7.77 12.92 -35.23 -0.46 -8.22 16 18 C -0.13 -1.74 7.03 -25.92 -0.18 -1.93 16 19 C -0.14 -1.77 7.72 -25.92 -0.20 -1.97 16 20 C -0.13 -1.63 7.24 -25.82 -0.19 -1.81 16 21 H 0.07 1.33 5.85 -51.93 -0.30 1.02 16 22 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 1.14 4.83 -51.93 -0.25 0.89 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.33 6.93 6.39 -39.29 -0.25 6.68 16 28 H 0.08 1.53 5.07 -51.93 -0.26 1.27 16 29 H 0.02 0.34 7.16 -51.93 -0.37 -0.03 16 30 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 31 H 0.03 0.36 8.06 -51.93 -0.42 -0.06 16 32 H 0.37 3.44 9.12 45.56 0.42 3.85 16 33 H 0.07 1.10 6.81 -51.93 -0.35 0.75 16 34 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.07 7.62 -51.93 -0.40 0.68 16 37 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 38 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 289.90 15.07 4.37 4.37 Total: -1.00 -30.50 289.90 -6.66 -37.16 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.53 Total: 8.07 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -0.80 Total: -17.59 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.13 Total: -40.95 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.46 Total: -8.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.38 Total: 17.16 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.50 -6.66 -37.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717640877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.310 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds