Wall clock time and date at job start Sun Mar 29 2020 21:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47469 * 2 1 4 4 H 1.09001 * 109.46865 * 305.79972 * 3 2 1 5 5 C 1.50696 * 109.47082 * 185.79918 * 3 2 1 6 6 H 1.08003 * 119.99369 * 244.25985 * 5 3 2 7 7 C 1.37872 * 120.00181 * 64.25538 * 5 3 2 8 8 N 1.31519 * 119.99918 * 194.44508 * 7 5 3 9 9 Si 1.86800 * 120.00032 * 14.44764 * 7 5 3 10 10 H 1.48502 * 109.47039 * 92.67791 * 9 7 5 11 11 H 1.48493 * 109.47281 * 212.67689 * 9 7 5 12 12 H 1.48494 * 109.47243 * 332.67856 * 9 7 5 13 13 N 1.46900 * 109.46871 * 65.79479 * 3 2 1 14 14 C 1.46902 * 111.00384 * 260.90094 * 13 3 2 15 15 C 1.52994 * 109.47163 * 184.07630 * 14 13 3 16 16 C 1.52999 * 112.85492 * 294.00882 * 15 14 13 17 17 O 1.42901 * 109.47021 * 305.94511 * 16 15 14 18 18 C 1.53779 * 113.61255 * 65.20947 * 15 14 13 19 19 C 1.53775 * 87.08456 * 89.19721 * 18 15 14 20 20 C 1.53780 * 87.17519 * 25.38825 * 19 18 15 21 21 H 1.09005 * 109.46900 * 301.19893 * 1 2 3 22 22 H 1.09004 * 109.46399 * 61.19022 * 1 2 3 23 23 H 1.08994 * 109.47653 * 181.19366 * 1 2 3 24 24 H 1.08997 * 109.47153 * 239.99650 * 2 1 3 25 25 H 1.09001 * 109.46275 * 119.99906 * 2 1 3 26 26 H 0.97003 * 120.00060 * 179.97438 * 8 7 5 27 27 H 1.00903 * 110.99399 * 136.95318 * 13 3 2 28 28 H 1.09003 * 109.46457 * 64.07405 * 14 13 3 29 29 H 1.09001 * 109.46823 * 304.08240 * 14 13 3 30 30 H 1.08997 * 109.46886 * 65.94263 * 16 15 14 31 31 H 1.08995 * 109.47532 * 185.94579 * 16 15 14 32 32 H 0.96698 * 114.00422 * 179.97438 * 17 16 15 33 33 H 1.09003 * 113.61708 * 334.64424 * 18 15 14 34 34 H 1.09005 * 113.68959 * 203.75640 * 18 15 14 35 35 H 1.08996 * 113.61919 * 139.98107 * 19 18 15 36 36 H 1.09002 * 113.61604 * 270.79926 * 19 18 15 37 37 H 1.09001 * 113.60917 * 89.15802 * 20 19 18 38 38 H 1.08998 * 113.61597 * 220.06366 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5945 1.9854 -0.8335 5 6 3.5402 1.4448 -0.1436 6 1 4.1586 1.8232 0.6570 7 6 4.1232 0.9638 -1.2967 8 7 5.4111 0.6986 -1.3212 9 14 3.0837 0.6888 -2.8242 10 1 3.1232 1.9050 -3.6753 11 1 3.6206 -0.4667 -3.5869 12 1 1.6811 0.4094 -2.4247 13 7 1.6680 2.0934 1.2632 14 6 0.4663 2.9214 1.0949 15 6 0.1694 3.6608 2.4009 16 6 -0.2205 2.7188 3.5418 17 8 -1.3090 1.8917 3.1256 18 6 1.2499 4.6839 2.7889 19 6 0.4586 5.7141 1.9659 20 6 -0.7885 4.8540 2.2300 21 1 -0.3633 0.5324 0.8791 22 1 -0.3632 0.4953 -0.9005 23 1 -0.3634 -1.0273 0.0214 24 1 1.8934 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 5.8212 0.3598 -2.1323 27 1 2.4345 2.6386 1.6285 28 1 -0.3802 2.2848 0.8371 29 1 0.6327 3.6453 0.2971 30 1 0.6324 2.0925 3.8033 31 1 -0.5209 3.3048 4.4103 32 1 -1.6092 1.2676 3.8005 33 1 2.2333 4.4581 2.3765 34 1 1.2792 4.9068 3.8555 35 1 0.4143 6.7006 2.4274 36 1 0.7494 5.7507 0.9161 37 1 -1.3187 5.1226 3.1437 38 1 -1.4484 4.7651 1.3670 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717640877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:58 Heat of formation + Delta-G solvation = -59.939408 kcal Electronic energy + Delta-G solvation = -16873.034469 eV Core-core repulsion = 14328.866094 eV Total energy + Delta-G solvation = -2544.168374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76800 -37.80189 -36.89554 -34.39666 -32.79520 -30.05999 -28.61003 -26.68850 -25.69000 -24.07936 -22.90180 -21.38934 -19.52713 -18.56168 -18.05584 -17.35631 -16.58216 -16.08511 -15.86144 -15.27308 -14.86054 -14.74989 -14.50723 -13.92209 -13.76990 -13.55870 -13.22837 -13.15376 -12.77226 -12.67922 -12.43340 -12.27746 -11.97213 -11.74024 -11.38630 -11.16028 -11.14576 -11.03585 -10.92275 -10.63317 -10.52420 -9.01534 -8.34564 -6.34042 1.30205 1.34463 1.45711 2.32311 2.99954 3.27096 3.59812 3.75791 3.88568 3.98538 4.15214 4.32804 4.47924 4.52705 4.55983 4.66132 4.73965 4.83009 4.86427 4.90299 4.91523 4.98741 5.03849 5.10390 5.20461 5.25283 5.32124 5.47265 5.47562 5.57263 5.58814 5.82228 6.02533 6.52084 6.68687 6.89894 7.07911 7.32201 8.81732 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.008281 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.960751 B = 3380.507719 C = 3763.543564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C 0.198 3.802 4 H -0.006 1.006 5 C -0.534 4.534 6 H 0.038 0.962 7 C 0.023 3.977 8 N -0.939 5.939 9 Si 0.924 3.076 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.229 1.229 13 N -0.671 5.671 14 C 0.086 3.914 15 C -0.083 4.083 16 C 0.105 3.895 17 O -0.583 6.583 18 C -0.131 4.131 19 C -0.139 4.139 20 C -0.117 4.117 21 H 0.072 0.928 22 H 0.036 0.964 23 H 0.054 0.946 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.266 0.734 27 H 0.330 0.670 28 H 0.075 0.925 29 H 0.007 0.993 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.389 0.611 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.428 6.225 8.400 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C 0.088 3.912 4 H 0.012 0.988 5 C -0.572 4.572 6 H 0.056 0.944 7 C -0.176 4.176 8 N -0.578 5.578 9 Si 0.749 3.251 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.152 1.152 13 N -0.302 5.302 14 C -0.044 4.044 15 C -0.083 4.083 16 C 0.028 3.972 17 O -0.390 6.390 18 C -0.168 4.168 19 C -0.177 4.177 20 C -0.155 4.155 21 H 0.090 0.910 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.149 0.851 28 H 0.093 0.907 29 H 0.025 0.975 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.238 0.762 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.564 5.950 7.983 17.642 hybrid contribution 0.820 0.130 -0.961 1.270 sum -13.744 6.080 7.022 16.588 Atomic orbital electron populations 1.21836 0.95531 1.01153 1.01423 1.21743 0.95431 0.97816 0.99464 1.19302 0.92393 0.92123 0.87379 0.98837 1.21519 0.91673 1.41856 1.02152 0.94362 1.25719 0.95838 0.94107 1.01941 1.70106 1.13183 1.45399 1.29114 0.86215 0.81813 0.77780 0.79342 1.20539 1.20990 1.15174 1.60515 1.06989 1.34313 1.28342 1.21797 0.94029 0.94100 0.94431 1.21928 0.97801 0.93556 0.95047 1.21947 0.88592 0.91922 0.94754 1.86435 1.52304 1.54595 1.45701 1.22961 0.96967 0.95606 1.01311 1.22795 0.96609 0.98449 0.99825 1.22940 0.95880 0.94327 1.02379 0.90951 0.94463 0.92675 0.94578 0.93507 0.92531 0.85147 0.90669 0.97535 0.94261 0.92229 0.76228 0.92995 0.88032 0.89603 0.91724 0.88283 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 9.10 71.98 0.66 -4.58 16 2 C -0.11 -4.75 4.84 30.60 0.15 -4.60 16 3 C 0.20 9.46 1.75 44.17 0.08 9.54 16 4 H -0.01 -0.29 6.27 -2.39 -0.01 -0.31 16 5 C -0.53 -30.66 9.02 25.60 0.23 -30.42 16 6 H 0.04 2.41 7.70 -2.91 -0.02 2.39 16 7 C 0.02 1.33 5.34 84.65 0.45 1.78 16 8 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 9 Si 0.92 44.57 25.76 68.60 1.77 46.34 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 12 H -0.23 -10.22 5.42 99.48 0.54 -9.68 16 13 N -0.67 -27.58 6.00 -495.45 -2.97 -30.55 16 14 C 0.09 3.00 4.31 86.30 0.37 3.37 16 15 C -0.08 -2.25 0.84 -51.60 -0.04 -2.29 16 16 C 0.11 2.58 6.29 71.98 0.45 3.03 16 17 O -0.58 -14.49 12.92 -148.98 -1.92 -16.41 16 18 C -0.13 -3.25 7.03 31.12 0.22 -3.04 16 19 C -0.14 -3.17 7.72 31.12 0.24 -2.93 16 20 C -0.12 -2.66 7.24 31.18 0.23 -2.43 16 21 H 0.07 2.62 5.85 -2.38 -0.01 2.60 16 22 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 24 H 0.04 1.68 4.83 -2.39 -0.01 1.67 16 25 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 27 H 0.33 14.08 6.39 -89.69 -0.57 13.51 16 28 H 0.08 2.73 5.07 -2.39 -0.01 2.72 16 29 H 0.01 0.24 7.16 -2.39 -0.02 0.23 16 30 H 0.04 1.08 8.13 -2.39 -0.02 1.06 16 31 H 0.06 1.14 8.06 -2.39 -0.02 1.12 16 32 H 0.39 6.17 9.12 -74.06 -0.68 5.49 16 33 H 0.05 1.53 6.81 -2.39 -0.02 1.51 16 34 H 0.10 2.05 8.10 -2.38 -0.02 2.03 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.67 7.62 -2.39 -0.02 1.65 16 37 H 0.10 1.83 8.05 -2.39 -0.02 1.82 16 38 H 0.06 1.43 8.10 -2.39 -0.02 1.42 16 Total: -1.00 -66.05 289.90 -0.17 -66.22 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -0.37 Total: 25.50 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 3.03 Total: -32.58 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -2.67 Total: -89.06 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.92 Total: -16.41 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.77 Total: 46.34 kcal Total: -66.05 -0.17 -66.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717640877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.278 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds