Wall clock time and date at job start Sun Mar 29 2020 21:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47392 * 2 1 4 4 O 1.42898 * 109.46852 * 239.99986 * 2 1 3 5 5 C 1.53002 * 109.46826 * 120.00391 * 2 1 3 6 6 H 1.08999 * 109.50141 * 299.91934 * 5 2 1 7 7 C 1.53112 * 109.50622 * 59.99803 * 5 2 1 8 8 C 1.53120 * 109.16264 * 177.59477 * 7 5 2 9 9 C 1.53043 * 109.27798 * 302.34621 * 8 7 5 10 10 N 1.46848 * 109.51992 * 59.17565 * 9 8 7 11 11 C 1.46906 * 110.99750 * 174.16249 * 10 9 8 12 12 C 1.50703 * 109.47109 * 66.04607 * 11 10 9 13 13 H 1.08005 * 119.99876 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99989 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47285 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47233 * 119.99722 * 16 14 12 19 19 H 1.48500 * 109.46790 * 239.99650 * 16 14 12 20 20 C 1.46840 * 111.20084 * 298.25560 * 10 9 8 21 21 H 1.09001 * 109.47229 * 299.99963 * 1 2 3 22 22 H 1.09011 * 109.47226 * 59.99828 * 1 2 3 23 23 H 1.09003 * 109.47517 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47050 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47176 * 300.00562 * 3 2 1 26 26 H 1.09001 * 109.46903 * 59.99838 * 3 2 1 27 27 H 0.96699 * 114.00208 * 300.00126 * 4 2 1 28 28 H 1.09005 * 109.52400 * 57.68676 * 7 5 2 29 29 H 1.09004 * 109.52729 * 297.50242 * 7 5 2 30 30 H 1.09002 * 109.50462 * 182.40703 * 8 7 5 31 31 H 1.08997 * 109.53372 * 62.30502 * 8 7 5 32 32 H 1.09007 * 109.45770 * 299.16462 * 9 8 7 33 33 H 1.08994 * 109.46236 * 179.19372 * 9 8 7 34 34 H 1.08992 * 109.47459 * 186.04525 * 11 10 9 35 35 H 1.09004 * 109.47040 * 306.04676 * 11 10 9 36 36 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.46536 * 181.75782 * 20 10 9 38 38 H 1.08998 * 109.47053 * 301.73095 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0399 -0.7214 1.2492 6 1 1.6780 -0.2071 2.1396 7 6 1.5299 -2.1650 1.2499 8 6 2.0935 -2.8966 2.4713 9 6 3.6224 -2.8383 2.4342 10 7 4.0602 -1.4366 2.4356 11 6 5.5225 -1.3419 2.5399 12 6 6.1529 -1.9132 1.2960 13 1 5.5296 -2.3068 0.5067 14 6 7.5253 -1.9334 1.1656 15 7 8.2843 -1.4536 2.1266 16 14 8.3067 -2.6408 -0.3765 17 1 7.2428 -3.1114 -1.2994 18 1 9.1161 -1.5918 -1.0473 19 1 9.1826 -3.7822 -0.0086 20 6 3.5704 -0.7261 1.2475 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.7209 -1.5952 -1.2329 28 1 1.8586 -2.6679 0.3404 29 1 0.4408 -2.1667 1.2949 30 1 1.7685 -3.9369 2.4544 31 1 1.7331 -2.4174 3.3815 32 1 3.9827 -3.3304 1.5307 33 1 4.0266 -3.3459 3.3099 34 1 5.8122 -0.2967 2.6468 35 1 5.8618 -1.9038 3.4102 36 1 9.2498 -1.4674 2.0347 37 1 3.9367 0.3004 1.2614 38 1 3.9309 -1.2281 0.3496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719680379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:36 Heat of formation + Delta-G solvation = -68.466247 kcal Electronic energy + Delta-G solvation = -17053.145141 eV Core-core repulsion = 14508.607015 eV Total energy + Delta-G solvation = -2544.538126 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.47255 -36.75451 -33.49433 -32.35296 -31.58430 -29.22936 -27.59659 -26.42680 -23.74478 -22.84526 -21.33071 -19.84955 -19.06120 -16.52995 -16.36231 -15.17737 -14.76164 -14.43593 -14.31680 -13.86045 -13.32200 -13.11749 -12.84926 -12.36809 -12.27459 -12.04008 -11.86630 -11.74536 -11.26763 -11.07333 -10.98936 -10.90847 -10.49643 -10.38497 -10.32518 -10.14530 -9.94443 -9.67155 -9.46132 -9.19931 -8.39676 -7.09196 -5.98756 -4.07637 3.28991 3.36972 3.41453 4.42165 4.44216 4.87021 4.92025 5.05825 5.23323 5.31644 5.39603 5.46723 5.57081 5.71213 5.85415 5.87517 5.90472 6.05495 6.11704 6.16092 6.22223 6.29552 6.38224 6.38594 6.49588 6.61434 6.78980 6.86934 7.01886 7.35080 7.56827 7.89416 7.94292 8.13281 8.34424 8.39173 9.03454 9.59195 11.06067 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029005 B = 0.008250 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.108088 B = 3393.249530 C = 3740.561584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.131 3.869 3 C -0.141 4.141 4 O -0.557 6.557 5 C -0.110 4.110 6 H 0.077 0.923 7 C -0.117 4.117 8 C -0.115 4.115 9 C 0.062 3.938 10 N -0.544 5.544 11 C 0.187 3.813 12 C -0.545 4.545 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.075 3.925 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.370 0.630 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.064 0.936 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.733 0.826 -2.449 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.090 3.910 3 C -0.198 4.198 4 O -0.363 6.363 5 C -0.130 4.130 6 H 0.096 0.904 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.066 4.066 10 N -0.267 5.267 11 C 0.061 3.939 12 C -0.584 4.584 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.053 4.053 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.218 0.782 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.466 1.674 -2.078 14.710 hybrid contribution 0.715 -1.356 -1.409 2.082 sum -13.750 0.317 -3.487 14.189 Atomic orbital electron populations 1.22525 0.96506 1.02185 1.02214 1.21195 0.91711 0.92989 0.85081 1.21784 1.02945 0.93461 1.01595 1.86563 1.77434 1.28505 1.43807 1.21888 0.97928 0.95624 0.97522 0.90446 1.21653 0.99105 0.95864 0.98782 1.21594 0.96869 0.98914 0.97895 1.21850 0.92884 0.91278 1.00621 1.62434 1.14959 1.11543 1.37813 1.19734 0.80463 0.97446 0.96222 1.21811 0.91887 1.40550 1.04188 0.92416 1.24965 0.97409 0.95260 0.96238 1.69959 1.04685 1.46035 1.32458 0.86604 0.79390 0.78869 0.83580 1.19824 1.20942 1.21017 1.21817 0.91121 0.99011 0.93389 0.91795 0.92339 0.92294 0.91017 0.92553 0.91406 0.78248 0.92568 0.92529 0.92632 0.91891 0.94695 0.91977 0.95192 0.95281 0.92935 0.91767 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 8.46 37.16 0.31 -1.61 16 2 C 0.13 1.80 0.84 -90.62 -0.08 1.72 16 3 C -0.14 -1.92 8.49 37.16 0.32 -1.60 16 4 O -0.56 -8.45 12.24 -35.23 -0.43 -8.88 16 5 C -0.11 -1.69 1.77 -90.54 -0.16 -1.85 16 6 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 7 C -0.12 -1.62 4.61 -26.61 -0.12 -1.74 16 8 C -0.11 -1.75 6.09 -26.65 -0.16 -1.91 16 9 C 0.06 1.23 5.14 -3.83 -0.02 1.21 16 10 N -0.54 -11.88 4.86 -236.10 -1.15 -13.03 16 11 C 0.19 4.93 5.13 -4.97 -0.03 4.90 16 12 C -0.55 -15.30 7.74 -34.44 -0.27 -15.56 16 13 H 0.06 1.62 5.84 -52.48 -0.31 1.32 16 14 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 C 0.08 1.50 3.78 -3.83 -0.01 1.48 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 23 H 0.06 0.59 6.49 -51.93 -0.34 0.25 16 24 H 0.07 1.12 6.46 -51.93 -0.34 0.78 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.37 4.59 7.29 45.56 0.33 4.92 16 28 H 0.06 0.78 6.67 -51.93 -0.35 0.43 16 29 H 0.06 0.66 6.58 -51.93 -0.34 0.32 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.75 7.03 -51.93 -0.37 0.38 16 33 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.82 8.06 -51.93 -0.42 0.40 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.06 1.34 6.46 -51.93 -0.34 1.00 16 38 H 0.05 1.03 6.08 -51.93 -0.32 0.71 16 LS Contribution 287.22 15.07 4.33 4.33 Total: -1.00 -30.21 287.22 -7.55 -37.77 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.71 Total: 2.12 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -0.31 Total: -13.24 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.41 Total: -38.99 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.43 Total: -8.88 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.21 -7.55 -37.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719680379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.698 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds