Wall clock time and date at job start Sun Mar 29 2020 21:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47392 * 2 1 4 4 O 1.42898 * 109.46852 * 239.99986 * 2 1 3 5 5 C 1.53002 * 109.46826 * 120.00391 * 2 1 3 6 6 H 1.08999 * 109.50141 * 299.91934 * 5 2 1 7 7 C 1.53112 * 109.50622 * 59.99803 * 5 2 1 8 8 C 1.53120 * 109.16264 * 177.59477 * 7 5 2 9 9 C 1.53043 * 109.27798 * 302.34621 * 8 7 5 10 10 N 1.46848 * 109.51992 * 59.17565 * 9 8 7 11 11 C 1.46906 * 110.99750 * 174.16249 * 10 9 8 12 12 C 1.50703 * 109.47109 * 66.04607 * 11 10 9 13 13 H 1.08005 * 119.99876 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99989 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47285 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47233 * 119.99722 * 16 14 12 19 19 H 1.48500 * 109.46790 * 239.99650 * 16 14 12 20 20 C 1.46840 * 111.20084 * 298.25560 * 10 9 8 21 21 H 1.09001 * 109.47229 * 299.99963 * 1 2 3 22 22 H 1.09011 * 109.47226 * 59.99828 * 1 2 3 23 23 H 1.09003 * 109.47517 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47050 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47176 * 300.00562 * 3 2 1 26 26 H 1.09001 * 109.46903 * 59.99838 * 3 2 1 27 27 H 0.96699 * 114.00208 * 300.00126 * 4 2 1 28 28 H 1.09005 * 109.52400 * 57.68676 * 7 5 2 29 29 H 1.09004 * 109.52729 * 297.50242 * 7 5 2 30 30 H 1.09002 * 109.50462 * 182.40703 * 8 7 5 31 31 H 1.08997 * 109.53372 * 62.30502 * 8 7 5 32 32 H 1.09007 * 109.45770 * 299.16462 * 9 8 7 33 33 H 1.08994 * 109.46236 * 179.19372 * 9 8 7 34 34 H 1.08992 * 109.47459 * 186.04525 * 11 10 9 35 35 H 1.09004 * 109.47040 * 306.04676 * 11 10 9 36 36 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.46536 * 181.75782 * 20 10 9 38 38 H 1.08998 * 109.47053 * 301.73095 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0399 -0.7214 1.2492 6 1 1.6780 -0.2071 2.1396 7 6 1.5299 -2.1650 1.2499 8 6 2.0935 -2.8966 2.4713 9 6 3.6224 -2.8383 2.4342 10 7 4.0602 -1.4366 2.4356 11 6 5.5225 -1.3419 2.5399 12 6 6.1529 -1.9132 1.2960 13 1 5.5296 -2.3068 0.5067 14 6 7.5253 -1.9334 1.1656 15 7 8.2843 -1.4536 2.1266 16 14 8.3067 -2.6408 -0.3765 17 1 7.2428 -3.1114 -1.2994 18 1 9.1161 -1.5918 -1.0473 19 1 9.1826 -3.7822 -0.0086 20 6 3.5704 -0.7261 1.2475 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.7209 -1.5952 -1.2329 28 1 1.8586 -2.6679 0.3404 29 1 0.4408 -2.1667 1.2949 30 1 1.7685 -3.9369 2.4544 31 1 1.7331 -2.4174 3.3815 32 1 3.9827 -3.3304 1.5307 33 1 4.0266 -3.3459 3.3099 34 1 5.8122 -0.2967 2.6468 35 1 5.8618 -1.9038 3.4102 36 1 9.2498 -1.4674 2.0347 37 1 3.9367 0.3004 1.2614 38 1 3.9309 -1.2281 0.3496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719680379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:35 Heat of formation + Delta-G solvation = -90.595108 kcal Electronic energy + Delta-G solvation = -17054.104721 eV Core-core repulsion = 14508.607015 eV Total energy + Delta-G solvation = -2545.497705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78134 -38.22415 -35.29694 -33.83381 -33.15266 -30.55816 -29.01307 -28.06251 -25.56765 -24.22200 -22.96055 -21.19635 -20.47545 -18.50190 -17.75875 -16.82401 -16.19963 -16.04727 -15.55666 -15.24684 -15.03770 -14.68068 -14.29041 -13.93525 -13.62460 -13.22846 -13.06467 -12.97436 -12.92194 -12.79092 -12.50656 -12.32446 -12.23485 -12.15326 -11.83503 -11.71495 -11.52223 -11.39204 -10.83200 -10.64809 -10.49648 -9.00821 -8.17766 -6.38235 1.32103 1.33303 1.45548 2.34152 3.05661 3.27329 3.49801 3.77285 3.89103 4.08330 4.18954 4.29767 4.38926 4.51640 4.67576 4.70902 4.80733 4.89869 4.92468 4.98535 5.01014 5.07633 5.11122 5.16438 5.21181 5.24985 5.28870 5.35216 5.38364 5.51417 5.56366 5.72367 6.04461 6.26491 6.59561 6.83678 6.91517 7.33296 8.84172 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029005 B = 0.008250 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.108088 B = 3393.249530 C = 3740.561584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.130 3.870 3 C -0.144 4.144 4 O -0.578 6.578 5 C -0.101 4.101 6 H 0.084 0.916 7 C -0.113 4.113 8 C -0.106 4.106 9 C 0.060 3.940 10 N -0.543 5.543 11 C 0.199 3.801 12 C -0.553 4.553 13 H 0.053 0.947 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.957 3.043 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.274 1.274 20 C 0.082 3.918 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.381 0.619 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.012 0.988 33 H 0.051 0.949 34 H 0.000 1.000 35 H 0.004 0.996 36 H 0.265 0.735 37 H 0.044 0.956 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.130 0.119 -3.375 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.090 3.910 3 C -0.201 4.201 4 O -0.386 6.386 5 C -0.120 4.120 6 H 0.102 0.898 7 C -0.151 4.151 8 C -0.144 4.144 9 C -0.068 4.068 10 N -0.266 5.266 11 C 0.072 3.928 12 C -0.592 4.592 13 H 0.071 0.929 14 C -0.189 4.189 15 N -0.567 5.567 16 Si 0.782 3.218 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.199 1.199 20 C -0.047 4.047 21 H 0.096 0.904 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.230 0.770 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.018 0.982 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -16.886 0.957 -3.005 17.178 hybrid contribution 1.484 -1.109 -1.083 2.145 sum -15.402 -0.152 -4.087 15.936 Atomic orbital electron populations 1.22433 0.93337 1.03533 1.03225 1.21272 0.93925 0.92194 0.83640 1.21838 1.00972 0.94343 1.02991 1.86546 1.78167 1.29556 1.44364 1.21831 0.93737 0.97519 0.98927 0.89795 1.21680 1.01294 0.94074 0.98016 1.21557 0.92663 1.01092 0.99057 1.21950 0.96616 0.89249 0.99016 1.62397 1.11868 1.13428 1.38933 1.19394 0.83692 0.94892 0.94810 1.21990 0.92292 1.40466 1.04478 0.92856 1.25837 0.98003 0.95587 0.99520 1.70073 1.05154 1.47032 1.34439 0.85518 0.78422 0.78343 0.79499 1.19369 1.20285 1.19948 1.21775 0.94895 0.97004 0.90998 0.90443 0.91729 0.90766 0.94144 0.91544 0.89679 0.76984 0.92559 0.88634 0.89911 0.91099 0.96937 0.93011 0.98172 0.97819 0.92556 0.93790 0.96616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 8.46 71.98 0.61 -2.36 16 2 C 0.13 3.30 0.84 -10.79 -0.01 3.29 16 3 C -0.14 -3.80 8.49 71.98 0.61 -3.19 16 4 O -0.58 -16.73 12.24 -148.98 -1.82 -18.56 16 5 C -0.10 -2.91 1.77 -10.74 -0.02 -2.93 16 6 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 7 C -0.11 -2.76 4.61 30.67 0.14 -2.62 16 8 C -0.11 -2.95 6.09 30.65 0.19 -2.76 16 9 C 0.06 2.37 5.14 86.33 0.44 2.82 16 10 N -0.54 -24.42 4.86 -900.90 -4.38 -28.80 16 11 C 0.20 11.06 5.13 85.56 0.44 11.50 16 12 C -0.55 -32.17 7.74 25.60 0.20 -31.97 16 13 H 0.05 3.10 5.84 -2.91 -0.02 3.08 16 14 C 0.01 0.56 5.46 84.65 0.46 1.03 16 15 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 16 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 C 0.08 3.33 3.78 86.33 0.33 3.65 16 21 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.07 1.10 6.49 -2.39 -0.02 1.08 16 24 H 0.04 1.29 6.46 -2.39 -0.02 1.28 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.38 8.69 7.29 -74.06 -0.54 8.15 16 28 H 0.06 1.40 6.67 -2.38 -0.02 1.38 16 29 H 0.10 1.69 6.58 -2.38 -0.02 1.68 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.01 0.54 7.03 -2.38 -0.02 0.52 16 33 H 0.05 2.10 8.06 -2.39 -0.02 2.08 16 34 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.00 0.22 8.06 -2.38 -0.02 0.20 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.04 1.93 6.46 -2.38 -0.02 1.91 16 38 H 0.02 0.73 6.08 -2.39 -0.01 0.71 16 Total: -1.00 -67.47 287.22 -0.01 -67.48 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.49 Total: 12.44 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 3.39 Total: -23.55 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -4.09 Total: -85.48 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -1.82 Total: -18.56 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -67.47 -0.01 -67.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719680379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.119 kcal (2) G-P(sol) polarization free energy of solvation -67.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds