Wall clock time and date at job start Sun Mar 29 2020 21:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 O 1.42907 * 109.46834 * 240.00180 * 2 1 3 5 5 C 1.52995 * 109.47214 * 120.00320 * 2 1 3 6 6 H 1.09001 * 109.50559 * 65.07847 * 5 2 1 7 7 C 1.53125 * 109.50492 * 305.00119 * 5 2 1 8 8 C 1.53114 * 109.16368 * 182.40503 * 7 5 2 9 9 C 1.53037 * 109.31211 * 57.63311 * 8 7 5 10 10 N 1.46854 * 109.52285 * 300.88400 * 9 8 7 11 11 C 1.46895 * 110.99648 * 185.80147 * 10 9 8 12 12 C 1.50706 * 109.47267 * 65.74718 * 11 10 9 13 13 H 1.07994 * 119.99559 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99934 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00095 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99991 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47142 * 90.00074 * 16 14 12 18 18 H 1.48502 * 109.47347 * 210.00235 * 16 14 12 19 19 H 1.48504 * 109.47170 * 330.00189 * 16 14 12 20 20 C 1.46840 * 111.23238 * 61.67711 * 10 9 8 21 21 H 1.09003 * 109.47310 * 300.00089 * 1 2 3 22 22 H 1.09006 * 109.47483 * 59.99639 * 1 2 3 23 23 H 1.09004 * 109.47243 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46652 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47448 * 300.00213 * 3 2 1 26 26 H 1.09003 * 109.46639 * 60.00394 * 3 2 1 27 27 H 0.96697 * 113.99606 * 60.00187 * 4 2 1 28 28 H 1.08998 * 109.52257 * 62.49696 * 7 5 2 29 29 H 1.09004 * 109.56800 * 302.34406 * 7 5 2 30 30 H 1.09002 * 109.50377 * 177.59436 * 8 7 5 31 31 H 1.09003 * 109.50316 * 297.67431 * 8 7 5 32 32 H 1.09000 * 109.46159 * 60.85546 * 9 8 7 33 33 H 1.09000 * 109.46461 * 180.82902 * 9 8 7 34 34 H 1.09006 * 109.47095 * 185.74417 * 11 10 9 35 35 H 1.08994 * 109.47117 * 305.74495 * 11 10 9 36 36 H 0.97001 * 119.99801 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.46294 * 178.26219 * 20 10 9 38 38 H 1.09005 * 109.46534 * 58.30014 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2492 6 1 1.7531 -1.7720 1.2054 7 6 1.4298 -0.0764 2.4968 8 6 1.9914 -0.7646 3.7440 9 6 3.5177 -0.6525 3.7400 10 7 4.0529 -1.2836 2.5268 11 6 5.5212 -1.3169 2.5548 12 6 5.9821 -2.2201 3.6697 13 1 5.2567 -2.7197 4.2946 14 6 7.3297 -2.4093 3.8912 15 7 8.2130 -1.8020 3.1292 16 14 7.9010 -3.5283 5.2736 17 1 8.0438 -4.9148 4.7612 18 1 9.2111 -3.0526 5.7861 19 1 6.9023 -3.5070 6.3724 20 6 3.5647 -0.6096 1.3170 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 1.7209 -0.2700 -1.9980 28 1 0.3462 -0.1920 2.4737 29 1 1.6826 0.9836 2.5206 30 1 1.5934 -0.2817 4.6365 31 1 1.7038 -1.8160 3.7401 32 1 3.8046 0.3989 3.7585 33 1 3.9210 -1.1545 4.6194 34 1 5.8943 -1.6952 1.6030 35 1 5.9043 -0.3101 2.7209 36 1 9.1611 -1.9355 3.2848 37 1 4.0029 -1.0805 0.4370 38 1 3.8509 0.4418 1.3464 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719680386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:38 Heat of formation + Delta-G solvation = -65.380601 kcal Electronic energy + Delta-G solvation = -16763.219836 eV Core-core repulsion = 14218.815514 eV Total energy + Delta-G solvation = -2544.404322 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.46748 -36.91641 -33.83482 -32.35237 -31.33281 -29.24333 -27.49302 -26.71032 -24.02229 -22.74588 -21.63104 -19.87006 -18.58719 -16.47340 -16.20101 -15.65620 -14.80180 -14.46412 -14.24090 -13.95993 -13.56655 -13.31594 -12.97082 -12.66740 -12.10369 -12.02552 -11.92828 -11.67033 -11.61083 -11.13072 -11.00180 -10.72850 -10.63590 -10.47650 -10.21795 -10.07428 -9.88157 -9.81735 -9.45545 -9.04807 -8.37624 -7.09345 -5.97115 -3.98154 3.35765 3.41248 3.44920 4.24825 4.46525 4.75013 4.90713 5.03172 5.19164 5.33745 5.37406 5.40092 5.49165 5.54083 5.68340 5.75751 5.86482 5.94117 6.00473 6.13097 6.16522 6.23574 6.27427 6.36513 6.36763 6.59976 6.70234 6.82528 6.85959 7.41156 7.43955 7.79308 7.87639 8.19253 8.32543 8.65443 9.09896 9.65755 11.13870 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043705 B = 0.006401 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.512350 B = 4373.447802 C = 4706.850260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.130 3.870 3 C -0.182 4.182 4 O -0.555 6.555 5 C -0.068 4.068 6 H 0.081 0.919 7 C -0.113 4.113 8 C -0.117 4.117 9 C 0.064 3.936 10 N -0.538 5.538 11 C 0.194 3.806 12 C -0.505 4.505 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.065 3.935 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.369 0.631 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.016 0.984 33 H 0.082 0.918 34 H 0.030 0.970 35 H -0.011 1.011 36 H 0.260 0.740 37 H 0.072 0.928 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.863 6.003 -4.746 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.090 3.910 3 C -0.240 4.240 4 O -0.360 6.360 5 C -0.086 4.086 6 H 0.100 0.900 7 C -0.151 4.151 8 C -0.155 4.155 9 C -0.065 4.065 10 N -0.262 5.262 11 C 0.069 3.931 12 C -0.544 4.544 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.540 5.540 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.063 4.063 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.215 0.785 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.034 0.966 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.007 0.993 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -14.545 5.153 -4.317 16.023 hybrid contribution 0.485 0.702 0.246 0.888 sum -14.060 5.855 -4.071 15.765 Atomic orbital electron populations 1.22543 0.96278 1.02587 1.02101 1.21211 0.91994 0.91333 0.86500 1.22609 1.03007 0.96499 1.01854 1.86648 1.77157 1.56872 1.15342 1.21085 0.96335 1.00171 0.91055 0.90037 1.21727 0.99153 0.99455 0.94741 1.21623 0.96593 1.00947 0.96322 1.21937 0.92920 0.96225 0.95383 1.61964 1.12496 1.51886 0.99903 1.19687 0.80006 0.95534 0.97892 1.21187 0.91368 1.27028 1.14797 0.91878 1.24996 0.96752 0.96246 0.96706 1.69969 1.01354 1.43449 1.39184 0.86503 0.77890 0.80846 0.82183 1.20643 1.21378 1.19889 1.22033 0.93190 0.96182 0.94905 0.91347 0.92853 0.91863 0.91121 0.92960 0.91558 0.78520 0.92244 0.92329 0.92392 0.91445 0.96583 0.89978 0.95231 0.99350 0.92997 0.90971 0.96085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.33 37.16 0.31 -1.51 16 2 C 0.13 1.66 0.87 -90.62 -0.08 1.59 16 3 C -0.18 -2.15 8.08 37.16 0.30 -1.85 16 4 O -0.56 -7.53 12.54 -35.23 -0.44 -7.98 16 5 C -0.07 -1.06 1.95 -90.54 -0.18 -1.24 16 6 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 7 C -0.11 -1.58 4.51 -26.61 -0.12 -1.70 16 8 C -0.12 -1.85 6.09 -26.65 -0.16 -2.01 16 9 C 0.06 1.29 5.30 -3.83 -0.02 1.27 16 10 N -0.54 -12.23 4.65 -236.11 -1.10 -13.33 16 11 C 0.19 5.29 4.72 -4.98 -0.02 5.26 16 12 C -0.51 -14.61 8.43 -34.44 -0.29 -14.90 16 13 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 16 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 20 C 0.07 1.28 4.17 -3.84 -0.02 1.26 16 21 H 0.07 0.65 6.41 -51.93 -0.33 0.32 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.96 6.32 -51.93 -0.33 0.64 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.74 6.52 -51.93 -0.34 0.40 16 27 H 0.37 3.34 9.04 45.56 0.41 3.75 16 28 H 0.06 0.70 6.50 -51.93 -0.34 0.36 16 29 H 0.06 0.79 6.47 -51.93 -0.34 0.45 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 1.79 6.70 -51.93 -0.35 1.44 16 34 H 0.03 0.87 7.99 -51.93 -0.41 0.45 16 35 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 1.52 7.73 -51.93 -0.40 1.12 16 38 H 0.02 0.41 6.29 -51.93 -0.33 0.08 16 LS Contribution 289.77 15.07 4.37 4.37 Total: -1.00 -31.49 289.77 -7.47 -38.96 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.64 Total: -0.06 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -0.38 Total: -12.35 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.36 Total: -39.99 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.44 Total: -7.98 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.49 -7.47 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719680386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.417 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds