Wall clock time and date at job start Sun Mar 29 2020 21:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 O 1.42907 * 109.46834 * 240.00180 * 2 1 3 5 5 C 1.52995 * 109.47214 * 120.00320 * 2 1 3 6 6 H 1.09001 * 109.50559 * 65.07847 * 5 2 1 7 7 C 1.53125 * 109.50492 * 305.00119 * 5 2 1 8 8 C 1.53114 * 109.16368 * 182.40503 * 7 5 2 9 9 C 1.53037 * 109.31211 * 57.63311 * 8 7 5 10 10 N 1.46854 * 109.52285 * 300.88400 * 9 8 7 11 11 C 1.46895 * 110.99648 * 185.80147 * 10 9 8 12 12 C 1.50706 * 109.47267 * 65.74718 * 11 10 9 13 13 H 1.07994 * 119.99559 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99934 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00095 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99991 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47142 * 90.00074 * 16 14 12 18 18 H 1.48502 * 109.47347 * 210.00235 * 16 14 12 19 19 H 1.48504 * 109.47170 * 330.00189 * 16 14 12 20 20 C 1.46840 * 111.23238 * 61.67711 * 10 9 8 21 21 H 1.09003 * 109.47310 * 300.00089 * 1 2 3 22 22 H 1.09006 * 109.47483 * 59.99639 * 1 2 3 23 23 H 1.09004 * 109.47243 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46652 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47448 * 300.00213 * 3 2 1 26 26 H 1.09003 * 109.46639 * 60.00394 * 3 2 1 27 27 H 0.96697 * 113.99606 * 60.00187 * 4 2 1 28 28 H 1.08998 * 109.52257 * 62.49696 * 7 5 2 29 29 H 1.09004 * 109.56800 * 302.34406 * 7 5 2 30 30 H 1.09002 * 109.50377 * 177.59436 * 8 7 5 31 31 H 1.09003 * 109.50316 * 297.67431 * 8 7 5 32 32 H 1.09000 * 109.46159 * 60.85546 * 9 8 7 33 33 H 1.09000 * 109.46461 * 180.82902 * 9 8 7 34 34 H 1.09006 * 109.47095 * 185.74417 * 11 10 9 35 35 H 1.08994 * 109.47117 * 305.74495 * 11 10 9 36 36 H 0.97001 * 119.99801 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.46294 * 178.26219 * 20 10 9 38 38 H 1.09005 * 109.46534 * 58.30014 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2492 6 1 1.7531 -1.7720 1.2054 7 6 1.4298 -0.0764 2.4968 8 6 1.9914 -0.7646 3.7440 9 6 3.5177 -0.6525 3.7400 10 7 4.0529 -1.2836 2.5268 11 6 5.5212 -1.3169 2.5548 12 6 5.9821 -2.2201 3.6697 13 1 5.2567 -2.7197 4.2946 14 6 7.3297 -2.4093 3.8912 15 7 8.2130 -1.8020 3.1292 16 14 7.9010 -3.5283 5.2736 17 1 8.0438 -4.9148 4.7612 18 1 9.2111 -3.0526 5.7861 19 1 6.9023 -3.5070 6.3724 20 6 3.5647 -0.6096 1.3170 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 1.7209 -0.2700 -1.9980 28 1 0.3462 -0.1920 2.4737 29 1 1.6826 0.9836 2.5206 30 1 1.5934 -0.2817 4.6365 31 1 1.7038 -1.8160 3.7401 32 1 3.8046 0.3989 3.7585 33 1 3.9210 -1.1545 4.6194 34 1 5.8943 -1.6952 1.6030 35 1 5.9043 -0.3101 2.7209 36 1 9.1611 -1.9355 3.2848 37 1 4.0029 -1.0805 0.4370 38 1 3.8509 0.4418 1.3464 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719680386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:37 Heat of formation + Delta-G solvation = -89.054773 kcal Electronic energy + Delta-G solvation = -16764.246425 eV Core-core repulsion = 14218.815514 eV Total energy + Delta-G solvation = -2545.430911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74066 -38.29582 -35.52575 -34.15600 -32.75699 -30.60134 -28.85963 -28.22776 -25.67979 -24.24453 -23.29630 -21.38545 -19.85857 -18.46550 -17.44557 -17.12791 -16.36649 -16.08909 -15.70628 -15.37079 -14.89925 -14.68197 -14.36837 -14.15619 -13.79621 -13.54881 -13.06680 -12.96561 -12.79105 -12.66923 -12.50963 -12.45947 -12.25654 -12.04201 -11.82744 -11.60589 -11.38943 -11.17577 -10.92222 -10.67916 -10.63108 -8.98306 -8.22347 -6.33625 1.39304 1.42115 1.53102 2.39024 3.09181 3.21682 3.34946 3.85115 3.89171 4.04738 4.14399 4.19219 4.28958 4.46126 4.53282 4.70918 4.73158 4.77245 4.79933 4.91626 4.96171 5.01365 5.06914 5.14688 5.17469 5.21248 5.25042 5.31945 5.34097 5.46268 5.56323 5.64210 6.03876 6.37447 6.66565 6.83172 7.00559 7.36408 8.89252 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043705 B = 0.006401 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.512350 B = 4373.447802 C = 4706.850260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 C -0.180 4.180 4 O -0.581 6.581 5 C -0.064 4.064 6 H 0.063 0.937 7 C -0.107 4.107 8 C -0.109 4.109 9 C 0.062 3.938 10 N -0.548 5.548 11 C 0.209 3.791 12 C -0.524 4.524 13 H 0.064 0.936 14 C -0.001 4.001 15 N -0.937 5.937 16 Si 0.975 3.025 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.262 1.262 20 C 0.069 3.931 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.057 0.943 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.388 0.612 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.011 0.989 33 H 0.059 0.941 34 H -0.005 1.005 35 H -0.042 1.042 36 H 0.265 0.735 37 H 0.044 0.956 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.240 6.318 -3.971 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.090 3.910 3 C -0.237 4.237 4 O -0.390 6.390 5 C -0.083 4.083 6 H 0.082 0.918 7 C -0.144 4.144 8 C -0.147 4.147 9 C -0.066 4.066 10 N -0.272 5.272 11 C 0.083 3.917 12 C -0.562 4.562 13 H 0.082 0.918 14 C -0.199 4.199 15 N -0.578 5.578 16 Si 0.799 3.201 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.186 1.186 20 C -0.060 4.060 21 H 0.100 0.900 22 H 0.094 0.906 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.237 0.763 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.013 0.987 35 H -0.024 1.024 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -16.955 5.480 -3.559 18.171 hybrid contribution 1.255 0.629 -0.070 1.406 sum -15.700 6.110 -3.629 17.234 Atomic orbital electron populations 1.22466 0.93445 1.02874 1.03944 1.21205 0.93914 0.91015 0.84866 1.22578 1.01148 0.96250 1.03704 1.86603 1.77895 1.57802 1.16675 1.21066 0.92906 1.00064 0.94225 0.91820 1.21732 1.00969 0.99409 0.92319 1.21596 0.92685 1.01514 0.98906 1.22004 0.96296 0.95188 0.93115 1.61921 1.09497 1.53489 1.02301 1.19333 0.83206 0.93380 0.95829 1.21463 0.91978 1.27504 1.15299 0.91790 1.26001 0.96714 0.97726 0.99465 1.70108 1.01857 1.44802 1.40987 0.85304 0.77634 0.78473 0.78718 1.19826 1.20536 1.18590 1.22045 0.96355 0.95228 0.92323 0.89963 0.90596 0.92344 0.93991 0.90345 0.90499 0.76282 0.88635 0.91320 0.89270 0.91849 0.97063 0.92223 0.98701 1.02430 0.92621 0.93781 0.96204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 8.33 71.98 0.60 -2.23 16 2 C 0.13 3.08 0.87 -10.80 -0.01 3.07 16 3 C -0.18 -3.86 8.08 71.98 0.58 -3.28 16 4 O -0.58 -15.30 12.54 -148.98 -1.87 -17.17 16 5 C -0.06 -1.94 1.95 -10.74 -0.02 -1.96 16 6 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 7 C -0.11 -2.67 4.51 30.67 0.14 -2.53 16 8 C -0.11 -3.23 6.09 30.64 0.19 -3.04 16 9 C 0.06 2.53 5.30 86.32 0.46 2.99 16 10 N -0.55 -25.99 4.65 -900.93 -4.19 -30.18 16 11 C 0.21 12.12 4.72 85.56 0.40 12.52 16 12 C -0.52 -31.38 8.43 25.60 0.22 -31.17 16 13 H 0.06 3.73 7.12 -2.91 -0.02 3.71 16 14 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 15 N -0.94 -58.80 13.29 21.45 0.28 -58.51 16 16 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 C 0.07 2.79 4.17 86.33 0.36 3.15 16 21 H 0.08 1.16 6.41 -2.39 -0.02 1.14 16 22 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.04 1.14 6.32 -2.39 -0.02 1.12 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 1.48 6.52 -2.39 -0.02 1.47 16 27 H 0.39 6.40 9.04 -74.06 -0.67 5.73 16 28 H 0.10 1.79 6.50 -2.39 -0.02 1.77 16 29 H 0.07 1.62 6.47 -2.38 -0.02 1.60 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 2.66 6.70 -2.39 -0.02 2.65 16 34 H -0.01 -0.33 7.99 -2.38 -0.02 -0.34 16 35 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.04 1.99 7.73 -2.39 -0.02 1.97 16 38 H 0.02 0.81 6.29 -2.38 -0.02 0.79 16 Total: -1.00 -71.34 289.77 -0.01 -71.35 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.36 Total: 8.89 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 3.37 Total: -22.10 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -3.90 Total: -88.69 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -1.87 Total: -17.17 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -71.34 -0.01 -71.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719680386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.704 kcal (2) G-P(sol) polarization free energy of solvation -71.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds