Wall clock time and date at job start Sun Mar 29 2020 22:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53078 * 1 3 3 H 1.10915 * 106.80473 * 2 1 4 4 C 1.52571 * 109.98950 * 244.03905 * 2 1 3 5 5 C 1.52970 * 110.12120 * 282.04515 * 4 2 1 6 6 H 1.08757 * 110.26998 * 61.81398 * 5 4 2 7 7 C 1.53252 * 109.32423 * 181.78511 * 5 4 2 8 8 N 1.46497 * 109.47187 * 184.33176 * 7 5 4 9 9 C 1.46505 * 120.00053 * 269.99800 * 8 7 5 10 10 C 1.36936 * 120.00266 * 89.99706 * 8 7 5 11 11 H 1.07997 * 120.00173 * 337.31653 * 10 8 7 12 12 C 1.38820 * 120.00042 * 157.58853 * 10 8 7 13 13 N 1.31612 * 119.99872 * 155.72572 * 12 10 8 14 14 Si 1.86799 * 119.99845 * 335.73060 * 12 10 8 15 15 H 1.48496 * 109.47228 * 84.84633 * 14 12 10 16 16 H 1.48502 * 109.46890 * 204.84675 * 14 12 10 17 17 H 1.48497 * 109.47144 * 324.84401 * 14 12 10 18 18 C 1.52970 * 108.51845 * 300.94778 * 5 4 2 19 19 C 1.52560 * 110.16800 * 58.93091 * 18 5 4 20 20 H 1.10928 * 107.14769 * 193.92452 * 19 18 5 21 21 C 1.53090 * 109.98505 * 78.22047 * 19 18 5 22 22 O 1.40751 * 113.15221 * 312.70339 * 19 18 5 23 23 H 1.09001 * 109.47134 * 175.96272 * 1 2 3 24 24 H 1.09005 * 109.47049 * 295.96446 * 1 2 3 25 25 H 1.08998 * 109.46982 * 55.96280 * 1 2 3 26 26 H 1.09231 * 109.57235 * 161.72696 * 4 2 1 27 27 H 1.09228 * 109.57579 * 42.36857 * 4 2 1 28 28 H 1.08999 * 109.46951 * 64.32712 * 7 5 4 29 29 H 1.08996 * 109.46932 * 304.32712 * 7 5 4 30 30 H 1.08990 * 109.47126 * 272.10871 * 9 8 7 31 31 H 1.09007 * 109.46856 * 32.10429 * 9 8 7 32 32 H 1.09001 * 109.47147 * 152.09943 * 9 8 7 33 33 H 0.96999 * 119.99902 * 179.97438 * 13 12 10 34 34 H 1.09252 * 109.34195 * 179.38944 * 18 5 4 35 35 H 1.09240 * 109.35169 * 298.44805 * 18 5 4 36 36 H 1.09008 * 109.46576 * 293.58751 * 21 19 18 37 37 H 1.09000 * 109.47359 * 53.58494 * 21 19 18 38 38 H 1.08994 * 109.47322 * 173.59043 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5308 0.0000 0.0000 3 1 1.8514 1.0618 0.0000 4 6 2.0523 -0.6277 -1.2891 5 6 1.9506 -2.1520 -1.2109 6 1 0.9118 -2.4551 -1.1015 7 6 2.5197 -2.7648 -2.4951 8 7 2.3300 -4.2172 -2.4689 9 6 3.3628 -5.0805 -1.8907 10 6 1.1874 -4.7679 -2.9848 11 1 0.2914 -4.1710 -3.0710 12 6 1.1790 -6.0951 -3.3919 13 7 0.0464 -6.7643 -3.4307 14 14 2.7753 -6.9309 -3.8845 15 1 3.4558 -7.4521 -2.6719 16 1 2.4805 -8.0554 -4.8085 17 1 3.6584 -5.9498 -4.5647 18 6 2.7718 -2.6330 -0.0134 19 6 2.2505 -1.9966 1.2715 20 1 3.0170 -2.1669 2.0551 21 6 0.9797 -2.7148 1.7328 22 8 2.0485 -0.6083 1.1590 23 1 -0.3633 -1.0251 -0.0724 24 1 -0.3633 0.4499 0.9240 25 1 -0.3633 0.5752 -0.8516 26 1 3.0959 -0.3418 -1.4392 27 1 1.4629 -0.2684 -2.1356 28 1 3.5836 -2.5384 -2.5652 29 1 2.0016 -2.3463 -3.3580 30 1 4.0914 -5.3397 -2.6586 31 1 3.8633 -4.5539 -1.0780 32 1 2.9021 -5.9899 -1.5050 33 1 0.0405 -7.6916 -3.7154 34 1 2.6995 -3.7205 0.0616 35 1 3.8191 -2.3585 -0.1589 36 1 0.1815 -2.5403 1.0111 37 1 1.1739 -3.7847 1.8082 38 1 0.6786 -2.3306 2.7074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724858691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:24 Heat of formation + Delta-G solvation = -36.288940 kcal Electronic energy + Delta-G solvation = -17109.200892 eV Core-core repulsion = 14566.058079 eV Total energy + Delta-G solvation = -2543.142813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64581 -36.31067 -33.52987 -33.14016 -31.32630 -29.66994 -26.96619 -26.02413 -25.44751 -22.65282 -22.45445 -20.33503 -18.12572 -16.79858 -16.12280 -15.73725 -15.08019 -14.82303 -14.55573 -13.84981 -13.61952 -13.38020 -12.91324 -12.47211 -12.41424 -12.18423 -12.04202 -11.87382 -11.68313 -11.38482 -10.92789 -10.79188 -10.64473 -10.31271 -10.17774 -10.05520 -9.87252 -9.63675 -9.43709 -9.17610 -8.52421 -6.97999 -5.94070 -3.25189 3.35939 3.51061 3.54331 3.85376 4.56979 4.87936 4.99570 5.04009 5.19225 5.23515 5.33458 5.43837 5.45997 5.66478 5.72532 5.74193 5.86373 5.97325 6.05398 6.08881 6.14255 6.18434 6.25013 6.30088 6.35081 6.45083 6.53094 6.56019 6.57965 6.73095 6.77379 6.99500 7.95912 7.97272 8.33114 8.97487 9.76296 10.09162 11.22082 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037937 B = 0.007683 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.879405 B = 3643.368807 C = 3675.533681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.107 4.107 6 H 0.078 0.922 7 C 0.158 3.842 8 N -0.609 5.609 9 C 0.100 3.900 10 C -0.261 4.261 11 H 0.085 0.915 12 C 0.023 3.977 13 N -0.906 5.906 14 Si 0.887 3.113 15 H -0.288 1.288 16 H -0.306 1.306 17 H -0.280 1.280 18 C -0.141 4.141 19 C 0.103 3.897 20 H 0.082 0.918 21 C -0.177 4.177 22 O -0.386 6.386 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.005 0.995 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 11.301 7.614 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.048 3.952 3 H 0.100 0.900 4 C -0.183 4.183 5 C -0.128 4.128 6 H 0.097 0.903 7 C 0.031 3.969 8 N -0.332 5.332 9 C -0.045 4.045 10 C -0.389 4.389 11 H 0.103 0.897 12 C -0.176 4.176 13 N -0.549 5.549 14 Si 0.718 3.282 15 H -0.215 1.215 16 H -0.235 1.235 17 H -0.206 1.206 18 C -0.179 4.179 19 C 0.046 3.954 20 H 0.099 0.901 21 C -0.234 4.234 22 O -0.305 6.305 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.542 11.233 7.697 14.355 hybrid contribution 0.701 -0.869 -0.650 1.292 sum 5.243 10.365 7.047 13.586 Atomic orbital electron populations 1.22492 0.96805 1.02772 1.01688 1.21726 0.92736 0.95616 0.85138 0.90030 1.22139 1.01523 0.97141 0.97527 1.21683 1.01189 0.92745 0.97154 0.90344 1.20859 0.97262 0.84216 0.94577 1.44129 1.19878 1.00737 1.68500 1.21484 0.91854 0.95598 0.95526 1.18872 0.88157 0.95591 1.36261 0.89724 1.25147 0.96224 0.96507 0.99718 1.69890 1.25829 1.09577 1.49640 0.87013 0.84856 0.78232 0.78126 1.21504 1.23458 1.20637 1.22213 0.99092 1.02174 0.94416 1.21806 0.96274 0.80237 0.97100 0.90054 1.22453 0.99097 1.00694 1.01203 1.86326 1.83698 1.21948 1.38525 0.92001 0.92474 0.91922 0.91842 0.91037 0.94581 0.92752 0.97774 0.94385 0.92416 0.92857 0.89680 0.92410 0.92120 0.91597 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.32 37.20 0.35 -1.92 16 2 C 0.11 1.39 3.43 -26.91 -0.09 1.30 16 3 H 0.08 0.95 8.28 -50.83 -0.42 0.53 16 4 C -0.14 -2.00 4.77 -26.97 -0.13 -2.13 16 5 C -0.11 -1.79 2.32 -90.52 -0.21 -2.00 16 6 H 0.08 1.51 6.71 -52.07 -0.35 1.16 16 7 C 0.16 3.04 5.16 -3.91 -0.02 3.02 16 8 N -0.61 -14.34 2.57 -180.96 -0.47 -14.81 16 9 C 0.10 2.20 7.49 59.85 0.45 2.65 16 10 C -0.26 -7.25 10.04 -15.06 -0.15 -7.40 16 11 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 12 C 0.02 0.66 5.17 -17.43 -0.09 0.57 16 13 N -0.91 -27.87 13.97 55.49 0.78 -27.09 16 14 Si 0.89 22.81 24.03 -169.99 -4.08 18.73 16 15 H -0.29 -7.09 6.38 56.52 0.36 -6.73 16 16 H -0.31 -8.01 7.11 56.52 0.40 -7.61 16 17 H -0.28 -7.20 6.91 56.52 0.39 -6.81 16 18 C -0.14 -2.22 3.74 -26.97 -0.10 -2.33 16 19 C 0.10 1.49 3.43 -26.91 -0.09 1.39 16 20 H 0.08 1.07 8.28 -50.82 -0.42 0.65 16 21 C -0.18 -2.53 9.38 37.20 0.35 -2.18 16 22 O -0.39 -5.69 9.72 -33.73 -0.33 -6.02 16 23 H 0.06 0.88 5.63 -51.93 -0.29 0.58 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.83 8.16 -51.80 -0.42 0.41 16 27 H 0.07 0.93 8.05 -51.80 -0.42 0.52 16 28 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 30 H 0.00 0.10 5.61 -51.93 -0.29 -0.19 16 31 H 0.04 0.70 5.89 -51.93 -0.31 0.40 16 32 H 0.06 1.36 5.94 -51.93 -0.31 1.05 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.08 1.48 5.77 -51.79 -0.30 1.18 16 35 H 0.06 0.86 8.16 -51.79 -0.42 0.44 16 36 H 0.06 0.94 5.77 -51.92 -0.30 0.64 16 37 H 0.07 0.94 8.04 -51.93 -0.42 0.53 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -30.15 282.13 -5.98 -36.13 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.38 Total: -2.16 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 0.26 Total: -9.02 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.31 Total: -41.90 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.33 Total: -6.02 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.08 Total: 18.73 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.15 -5.98 -36.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724858691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.162 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds