Wall clock time and date at job start Sun Mar 29 2020 22:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53078 * 1 3 3 H 1.10915 * 106.80473 * 2 1 4 4 C 1.52571 * 109.98950 * 244.03905 * 2 1 3 5 5 C 1.52970 * 110.12120 * 282.04515 * 4 2 1 6 6 H 1.08757 * 110.26998 * 61.81398 * 5 4 2 7 7 C 1.53252 * 109.32423 * 181.78511 * 5 4 2 8 8 N 1.46497 * 109.47187 * 184.33176 * 7 5 4 9 9 C 1.46505 * 120.00053 * 269.99800 * 8 7 5 10 10 C 1.36936 * 120.00266 * 89.99706 * 8 7 5 11 11 H 1.07997 * 120.00173 * 337.31653 * 10 8 7 12 12 C 1.38820 * 120.00042 * 157.58853 * 10 8 7 13 13 N 1.31612 * 119.99872 * 155.72572 * 12 10 8 14 14 Si 1.86799 * 119.99845 * 335.73060 * 12 10 8 15 15 H 1.48496 * 109.47228 * 84.84633 * 14 12 10 16 16 H 1.48502 * 109.46890 * 204.84675 * 14 12 10 17 17 H 1.48497 * 109.47144 * 324.84401 * 14 12 10 18 18 C 1.52970 * 108.51845 * 300.94778 * 5 4 2 19 19 C 1.52560 * 110.16800 * 58.93091 * 18 5 4 20 20 H 1.10928 * 107.14769 * 193.92452 * 19 18 5 21 21 C 1.53090 * 109.98505 * 78.22047 * 19 18 5 22 22 O 1.40751 * 113.15221 * 312.70339 * 19 18 5 23 23 H 1.09001 * 109.47134 * 175.96272 * 1 2 3 24 24 H 1.09005 * 109.47049 * 295.96446 * 1 2 3 25 25 H 1.08998 * 109.46982 * 55.96280 * 1 2 3 26 26 H 1.09231 * 109.57235 * 161.72696 * 4 2 1 27 27 H 1.09228 * 109.57579 * 42.36857 * 4 2 1 28 28 H 1.08999 * 109.46951 * 64.32712 * 7 5 4 29 29 H 1.08996 * 109.46932 * 304.32712 * 7 5 4 30 30 H 1.08990 * 109.47126 * 272.10871 * 9 8 7 31 31 H 1.09007 * 109.46856 * 32.10429 * 9 8 7 32 32 H 1.09001 * 109.47147 * 152.09943 * 9 8 7 33 33 H 0.96999 * 119.99902 * 179.97438 * 13 12 10 34 34 H 1.09252 * 109.34195 * 179.38944 * 18 5 4 35 35 H 1.09240 * 109.35169 * 298.44805 * 18 5 4 36 36 H 1.09008 * 109.46576 * 293.58751 * 21 19 18 37 37 H 1.09000 * 109.47359 * 53.58494 * 21 19 18 38 38 H 1.08994 * 109.47322 * 173.59043 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5308 0.0000 0.0000 3 1 1.8514 1.0618 0.0000 4 6 2.0523 -0.6277 -1.2891 5 6 1.9506 -2.1520 -1.2109 6 1 0.9118 -2.4551 -1.1015 7 6 2.5197 -2.7648 -2.4951 8 7 2.3300 -4.2172 -2.4689 9 6 3.3628 -5.0805 -1.8907 10 6 1.1874 -4.7679 -2.9848 11 1 0.2914 -4.1710 -3.0710 12 6 1.1790 -6.0951 -3.3919 13 7 0.0464 -6.7643 -3.4307 14 14 2.7753 -6.9309 -3.8845 15 1 3.4558 -7.4521 -2.6719 16 1 2.4805 -8.0554 -4.8085 17 1 3.6584 -5.9498 -4.5647 18 6 2.7718 -2.6330 -0.0134 19 6 2.2505 -1.9966 1.2715 20 1 3.0170 -2.1669 2.0551 21 6 0.9797 -2.7148 1.7328 22 8 2.0485 -0.6083 1.1590 23 1 -0.3633 -1.0251 -0.0724 24 1 -0.3633 0.4499 0.9240 25 1 -0.3633 0.5752 -0.8516 26 1 3.0959 -0.3418 -1.4392 27 1 1.4629 -0.2684 -2.1356 28 1 3.5836 -2.5384 -2.5652 29 1 2.0016 -2.3463 -3.3580 30 1 4.0914 -5.3397 -2.6586 31 1 3.8633 -4.5539 -1.0780 32 1 2.9021 -5.9899 -1.5050 33 1 0.0405 -7.6916 -3.7154 34 1 2.6995 -3.7205 0.0616 35 1 3.8191 -2.3585 -0.1589 36 1 0.1815 -2.5403 1.0111 37 1 1.1739 -3.7847 1.8082 38 1 0.6786 -2.3306 2.7074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724858691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:23 Heat of formation + Delta-G solvation = -55.436692 kcal Electronic energy + Delta-G solvation = -17110.031201 eV Core-core repulsion = 14566.058079 eV Total energy + Delta-G solvation = -2543.973122 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82971 -37.99315 -35.05274 -34.29442 -33.31139 -30.91030 -28.55573 -27.49342 -27.03800 -24.11637 -23.69973 -21.98600 -19.32162 -18.83181 -17.37901 -17.28609 -16.60511 -16.34805 -15.74140 -15.33684 -15.10002 -14.86192 -14.57947 -14.15317 -13.83132 -13.64489 -13.23677 -13.22853 -13.03962 -13.02525 -12.35930 -12.22765 -12.21016 -11.97004 -11.79359 -11.57129 -11.51085 -11.15743 -10.96248 -10.53319 -10.28384 -8.94303 -8.16776 -5.43687 1.31447 1.41402 1.50339 2.42883 2.77262 3.05286 3.39229 3.83022 3.89723 3.99379 4.08361 4.10881 4.36730 4.44900 4.53174 4.57163 4.61491 4.66577 4.68585 4.74959 4.83768 4.91510 4.97683 5.02302 5.05823 5.07446 5.14398 5.23942 5.31384 5.36732 5.45433 5.61288 5.85245 6.11878 6.87305 6.93045 7.66420 8.00283 9.03282 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037937 B = 0.007683 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.879405 B = 3643.368807 C = 3675.533681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.100 3.900 3 H 0.109 0.891 4 C -0.139 4.139 5 C -0.099 4.099 6 H 0.044 0.956 7 C 0.153 3.847 8 N -0.621 5.621 9 C 0.099 3.901 10 C -0.246 4.246 11 H 0.050 0.950 12 C -0.037 4.037 13 N -0.955 5.955 14 Si 0.949 3.051 15 H -0.269 1.269 16 H -0.314 1.314 17 H -0.275 1.275 18 C -0.138 4.138 19 C 0.104 3.896 20 H 0.102 0.898 21 C -0.175 4.175 22 O -0.391 6.391 23 H 0.037 0.963 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.008 0.992 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 12.843 8.437 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.043 3.957 3 H 0.126 0.874 4 C -0.177 4.177 5 C -0.119 4.119 6 H 0.063 0.937 7 C 0.028 3.972 8 N -0.345 5.345 9 C -0.045 4.045 10 C -0.375 4.375 11 H 0.068 0.932 12 C -0.231 4.231 13 N -0.602 5.602 14 Si 0.779 3.221 15 H -0.195 1.195 16 H -0.243 1.243 17 H -0.201 1.201 18 C -0.176 4.176 19 C 0.047 3.953 20 H 0.120 0.880 21 C -0.232 4.232 22 O -0.310 6.310 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.898 12.815 8.540 16.874 hybrid contribution -0.085 -1.239 -0.871 1.518 sum 6.813 11.575 7.668 15.467 Atomic orbital electron populations 1.22481 0.96812 1.01528 1.02715 1.21908 0.92804 0.96701 0.84303 0.87382 1.22104 1.02766 0.94515 0.98316 1.21465 0.99151 0.94987 0.96345 0.93750 1.21071 0.98830 0.81749 0.95537 1.44242 1.19033 1.02702 1.68479 1.21531 0.91257 0.95167 0.96573 1.18798 0.88713 0.95167 1.34852 0.93180 1.25762 0.99160 0.97479 1.00711 1.70015 1.28141 1.09973 1.52043 0.85985 0.81073 0.76973 0.78065 1.19487 1.24333 1.20057 1.22167 0.99796 1.01021 0.94578 1.21825 0.96452 0.80175 0.96853 0.88021 1.22437 0.98821 1.00591 1.01390 1.86328 1.83764 1.21748 1.39202 0.94436 0.91756 0.90552 0.90194 0.90471 0.91977 0.93742 0.97458 0.90592 0.94425 0.93088 0.91604 0.90744 0.94097 0.92089 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.23 9.32 72.01 0.67 -3.56 16 2 C 0.10 2.37 3.43 30.48 0.10 2.48 16 3 H 0.11 2.08 8.28 -1.35 -0.01 2.07 16 4 C -0.14 -3.48 4.77 30.44 0.15 -3.33 16 5 C -0.10 -3.19 2.32 -10.73 -0.02 -3.21 16 6 H 0.04 1.74 6.71 -2.52 -0.02 1.72 16 7 C 0.15 5.69 5.16 86.46 0.45 6.14 16 8 N -0.62 -28.77 2.57 -726.45 -1.87 -30.64 16 9 C 0.10 4.14 7.49 127.77 0.96 5.09 16 10 C -0.25 -13.95 10.04 84.04 0.84 -13.10 16 11 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 12 C -0.04 -2.15 5.17 84.87 0.44 -1.71 16 13 N -0.96 -60.59 13.97 21.65 0.30 -60.29 16 14 Si 0.95 47.22 24.03 68.60 1.65 48.87 16 15 H -0.27 -12.44 6.38 99.48 0.63 -11.81 16 16 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 17 H -0.27 -13.30 6.91 99.48 0.69 -12.61 16 18 C -0.14 -4.03 3.74 30.44 0.11 -3.92 16 19 C 0.10 2.77 3.43 30.48 0.10 2.88 16 20 H 0.10 2.33 8.28 -1.35 -0.01 2.32 16 21 C -0.17 -4.88 9.38 72.01 0.68 -4.21 16 22 O -0.39 -10.43 9.72 -143.60 -1.40 -11.82 16 23 H 0.04 1.07 5.63 -2.39 -0.01 1.05 16 24 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.78 8.16 -2.26 -0.02 1.76 16 27 H 0.08 1.85 8.05 -2.27 -0.02 1.83 16 28 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 29 H 0.04 1.72 8.04 -2.39 -0.02 1.70 16 30 H 0.01 0.32 5.61 -2.39 -0.01 0.30 16 31 H 0.08 2.58 5.89 -2.38 -0.01 2.57 16 32 H 0.04 1.71 5.94 -2.39 -0.01 1.70 16 33 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.07 2.18 5.77 -2.25 -0.01 2.17 16 35 H 0.07 1.94 8.16 -2.26 -0.02 1.92 16 36 H 0.04 1.29 5.77 -2.38 -0.01 1.27 16 37 H 0.06 1.73 8.04 -2.39 -0.02 1.71 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -65.37 282.13 4.10 -61.27 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.94 Total: 9.08 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 4.47 Total: -16.47 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -1.57 Total: -90.92 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.40 Total: -11.82 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.65 Total: 48.87 kcal Total: -65.37 4.10 -61.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724858691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.831 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds