Wall clock time and date at job start Sun Mar 29 2020 22:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.48245 * 2 1 4 4 C 1.53094 * 109.47906 * 120.02284 * 2 1 3 5 5 C 1.53183 * 109.16145 * 62.38515 * 4 2 1 6 6 C 1.53005 * 109.54247 * 176.84747 * 5 4 2 7 7 N 1.46495 * 109.46981 * 175.17405 * 6 5 4 8 8 C 1.46501 * 120.00026 * 269.99856 * 7 6 5 9 9 C 1.36936 * 119.99709 * 90.00422 * 7 6 5 10 10 H 1.07994 * 120.00027 * 340.60785 * 9 7 6 11 11 C 1.38811 * 120.00022 * 160.61891 * 9 7 6 12 12 N 1.31626 * 120.00208 * 347.24523 * 11 9 7 13 13 Si 1.86796 * 120.00184 * 167.51854 * 11 9 7 14 14 H 1.48499 * 109.47766 * 269.72477 * 13 11 9 15 15 H 1.48507 * 109.47196 * 29.72838 * 13 11 9 16 16 H 1.48503 * 109.47375 * 149.72185 * 13 11 9 17 17 C 1.53169 * 109.11301 * 56.93331 * 5 4 2 18 18 C 1.53103 * 109.16043 * 303.15495 * 17 5 4 19 19 H 1.09004 * 109.40280 * 297.49434 * 18 17 5 20 20 C 1.52999 * 109.49608 * 177.50687 * 18 17 5 21 21 O 1.42904 * 109.48585 * 239.96918 * 2 1 3 22 22 H 1.08996 * 109.46635 * 299.98022 * 1 2 3 23 23 H 1.08993 * 109.46714 * 59.97618 * 1 2 3 24 24 H 1.08998 * 109.47497 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.52289 * 302.47771 * 4 2 1 26 26 H 1.09001 * 109.52272 * 182.28879 * 4 2 1 27 27 H 1.09006 * 109.54161 * 297.01724 * 5 4 2 28 28 H 1.09003 * 109.47108 * 55.17388 * 6 5 4 29 29 H 1.09002 * 109.46985 * 295.17815 * 6 5 4 30 30 H 1.09007 * 109.47040 * 264.87296 * 8 7 6 31 31 H 1.08997 * 109.47171 * 24.87839 * 8 7 6 32 32 H 1.09001 * 109.47147 * 144.88101 * 8 7 6 33 33 H 0.96995 * 120.00125 * 180.02562 * 12 11 9 34 34 H 1.09007 * 109.52196 * 62.96826 * 17 5 4 35 35 H 1.09002 * 109.52552 * 183.15548 * 17 5 4 36 36 H 1.09000 * 109.46653 * 299.96026 * 20 18 17 37 37 H 1.09001 * 109.47064 * 59.95748 * 20 18 17 38 38 H 1.08997 * 109.47179 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 1.2497 5 6 1.5759 -2.1813 1.2122 6 6 2.1469 -2.9314 2.4174 7 7 1.6099 -4.2941 2.4437 8 6 0.3672 -4.5779 3.1658 9 6 2.2695 -5.3026 1.7933 10 1 2.9852 -5.0685 1.0192 11 6 2.0180 -6.6258 2.1288 12 7 1.3474 -6.9109 3.2250 13 14 2.6379 -8.0024 1.0288 14 1 1.6040 -8.3290 0.0141 15 1 3.8824 -7.5674 0.3451 16 1 2.9204 -9.2053 1.8525 17 6 2.0750 -2.8336 -0.0807 18 6 1.5649 -2.0286 -1.2790 19 1 0.4754 -2.0552 -1.2958 20 6 2.1103 -2.6373 -2.5724 21 8 2.0068 -0.6742 -1.1663 22 1 -0.3632 0.5135 0.8902 23 1 -0.3632 0.5142 -0.8897 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6420 -0.2356 2.1399 26 1 3.1298 -0.6872 1.2711 27 1 0.4869 -2.2181 1.2425 28 1 1.8668 -2.4127 3.3342 29 1 3.2335 -2.9704 2.3396 30 1 0.6030 -4.9322 4.1694 31 1 -0.2301 -3.6685 3.2325 32 1 -0.1958 -5.3441 2.6330 33 1 1.1720 -7.8355 3.4597 34 1 3.1650 -2.8425 -0.0870 35 1 1.7011 -3.8557 -0.1410 36 1 3.1998 -2.6109 -2.5552 37 1 1.7732 -3.6703 -2.6582 38 1 1.7465 -2.0642 -3.4253 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724863373.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:19 Heat of formation + Delta-G solvation = -40.829622 kcal Electronic energy + Delta-G solvation = -17053.684448 eV Core-core repulsion = 14510.344736 eV Total energy + Delta-G solvation = -2543.339712 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.61507 -35.95535 -33.40346 -32.91022 -30.86111 -29.23385 -26.40222 -25.84555 -25.64263 -22.47688 -21.67811 -20.00694 -18.86217 -16.62278 -16.02940 -15.62091 -15.01895 -14.56957 -14.06283 -13.74137 -13.35740 -12.81870 -12.64551 -12.50193 -12.35436 -11.86797 -11.76054 -11.50341 -11.27215 -11.06107 -10.83649 -10.77336 -10.71558 -10.37858 -10.23204 -10.16134 -9.87388 -9.61619 -9.48228 -8.98597 -8.47596 -6.70286 -5.66689 -3.09664 3.39968 3.46476 3.47613 4.04615 4.53426 5.03174 5.14105 5.17617 5.27723 5.43733 5.49566 5.54126 5.61670 5.68615 5.79913 5.89082 5.90546 6.03174 6.06878 6.21143 6.27204 6.31480 6.36757 6.46200 6.60177 6.64887 6.75799 6.83528 7.00368 7.09070 7.47145 7.61212 7.77061 7.86743 8.44205 9.29947 9.94632 10.42734 11.38475 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030714 B = 0.008537 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.427292 B = 3279.138191 C = 3887.665799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.090 3.910 3 H 0.092 0.908 4 C -0.143 4.143 5 C -0.108 4.108 6 C 0.158 3.842 7 N -0.604 5.604 8 C 0.166 3.834 9 C -0.245 4.245 10 H 0.072 0.928 11 C -0.004 4.004 12 N -0.912 5.912 13 Si 0.901 3.099 14 H -0.289 1.289 15 H -0.280 1.280 16 H -0.292 1.292 17 C -0.133 4.133 18 C 0.081 3.919 19 H 0.054 0.946 20 C -0.142 4.142 21 O -0.382 6.382 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.026 0.974 31 H -0.007 1.007 32 H 0.044 0.956 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.132 11.498 -6.326 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.032 3.968 3 H 0.110 0.890 4 C -0.182 4.182 5 C -0.129 4.129 6 C 0.030 3.970 7 N -0.326 5.326 8 C 0.021 3.979 9 C -0.375 4.375 10 H 0.090 0.910 11 C -0.202 4.202 12 N -0.558 5.558 13 Si 0.731 3.269 14 H -0.216 1.216 15 H -0.205 1.205 16 H -0.218 1.218 17 C -0.171 4.171 18 C 0.024 3.976 19 H 0.072 0.928 20 C -0.199 4.199 21 O -0.302 6.302 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.012 0.988 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.054 11.389 -6.371 13.093 hybrid contribution 0.071 -0.959 -0.269 0.999 sum -0.983 10.430 -6.640 12.403 Atomic orbital electron populations 1.22444 0.96922 1.02996 1.01865 1.22075 0.93132 0.95739 0.85826 0.88998 1.22211 1.01407 0.97181 0.97358 1.21901 1.00341 0.92829 0.97842 1.20746 0.96570 0.86032 0.93620 1.43916 1.24430 1.03117 1.61184 1.20774 0.86143 0.94389 0.96584 1.19260 1.20129 0.85497 1.12617 0.91024 1.24965 1.00768 0.97582 0.96838 1.70096 1.45095 1.17469 1.23114 0.86301 0.78476 0.82182 0.79931 1.21629 1.20521 1.21849 1.22219 1.00934 1.00896 0.93037 1.22186 0.97685 0.81901 0.95878 0.92804 1.21741 1.01872 1.00374 0.95936 1.87892 1.74039 1.25221 1.43063 0.91859 0.92524 0.91510 0.91634 0.91532 0.91833 0.94828 0.93736 0.95552 0.98836 0.93685 0.93919 0.92174 0.88904 0.92111 0.91077 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 8.65 37.16 0.32 -1.98 16 2 C 0.09 1.23 3.91 -26.68 -0.10 1.12 16 3 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.14 -2.09 4.93 -26.59 -0.13 -2.22 16 5 C -0.11 -1.90 2.17 -90.44 -0.20 -2.09 16 6 C 0.16 3.26 5.15 -4.04 -0.02 3.24 16 7 N -0.60 -15.11 2.82 -181.12 -0.51 -15.62 16 8 C 0.17 4.14 8.96 59.85 0.54 4.68 16 9 C -0.25 -6.64 8.18 -15.06 -0.12 -6.76 16 10 H 0.07 1.89 6.91 -52.49 -0.36 1.53 16 11 C 0.00 -0.12 5.12 -17.43 -0.09 -0.20 16 12 N -0.91 -26.80 10.48 55.49 0.58 -26.21 16 13 Si 0.90 21.95 29.57 -169.99 -5.03 16.93 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 C -0.13 -2.39 3.79 -26.59 -0.10 -2.49 16 18 C 0.08 1.26 2.93 -26.68 -0.08 1.19 16 19 H 0.05 0.84 6.34 -51.93 -0.33 0.51 16 20 C -0.14 -1.98 9.57 37.16 0.36 -1.62 16 21 O -0.38 -6.03 10.24 -35.23 -0.36 -6.39 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.92 4.98 -51.93 -0.26 0.66 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.17 6.62 -51.93 -0.34 0.82 16 28 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.04 0.94 8.04 -51.93 -0.42 0.52 16 30 H 0.03 0.71 7.44 -51.93 -0.39 0.32 16 31 H -0.01 -0.15 8.03 -51.93 -0.42 -0.57 16 32 H 0.04 1.21 7.08 -51.93 -0.37 0.84 16 33 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 35 H 0.09 1.91 6.39 -51.93 -0.33 1.58 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 289.30 15.07 4.36 4.36 Total: -1.00 -29.24 289.30 -7.16 -36.40 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.57 Total: -2.32 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 0.37 Total: -7.14 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.07 Total: -41.83 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.36 Total: -6.39 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.24 -7.16 -36.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724863373.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.434 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds