Wall clock time and date at job start Sun Mar 29 2020 22:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.48245 * 2 1 4 4 C 1.53094 * 109.47906 * 120.02284 * 2 1 3 5 5 C 1.53183 * 109.16145 * 62.38515 * 4 2 1 6 6 C 1.53005 * 109.54247 * 176.84747 * 5 4 2 7 7 N 1.46495 * 109.46981 * 175.17405 * 6 5 4 8 8 C 1.46501 * 120.00026 * 269.99856 * 7 6 5 9 9 C 1.36936 * 119.99709 * 90.00422 * 7 6 5 10 10 H 1.07994 * 120.00027 * 340.60785 * 9 7 6 11 11 C 1.38811 * 120.00022 * 160.61891 * 9 7 6 12 12 N 1.31626 * 120.00208 * 347.24523 * 11 9 7 13 13 Si 1.86796 * 120.00184 * 167.51854 * 11 9 7 14 14 H 1.48499 * 109.47766 * 269.72477 * 13 11 9 15 15 H 1.48507 * 109.47196 * 29.72838 * 13 11 9 16 16 H 1.48503 * 109.47375 * 149.72185 * 13 11 9 17 17 C 1.53169 * 109.11301 * 56.93331 * 5 4 2 18 18 C 1.53103 * 109.16043 * 303.15495 * 17 5 4 19 19 H 1.09004 * 109.40280 * 297.49434 * 18 17 5 20 20 C 1.52999 * 109.49608 * 177.50687 * 18 17 5 21 21 O 1.42904 * 109.48585 * 239.96918 * 2 1 3 22 22 H 1.08996 * 109.46635 * 299.98022 * 1 2 3 23 23 H 1.08993 * 109.46714 * 59.97618 * 1 2 3 24 24 H 1.08998 * 109.47497 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.52289 * 302.47771 * 4 2 1 26 26 H 1.09001 * 109.52272 * 182.28879 * 4 2 1 27 27 H 1.09006 * 109.54161 * 297.01724 * 5 4 2 28 28 H 1.09003 * 109.47108 * 55.17388 * 6 5 4 29 29 H 1.09002 * 109.46985 * 295.17815 * 6 5 4 30 30 H 1.09007 * 109.47040 * 264.87296 * 8 7 6 31 31 H 1.08997 * 109.47171 * 24.87839 * 8 7 6 32 32 H 1.09001 * 109.47147 * 144.88101 * 8 7 6 33 33 H 0.96995 * 120.00125 * 180.02562 * 12 11 9 34 34 H 1.09007 * 109.52196 * 62.96826 * 17 5 4 35 35 H 1.09002 * 109.52552 * 183.15548 * 17 5 4 36 36 H 1.09000 * 109.46653 * 299.96026 * 20 18 17 37 37 H 1.09001 * 109.47064 * 59.95748 * 20 18 17 38 38 H 1.08997 * 109.47179 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 1.2497 5 6 1.5759 -2.1813 1.2122 6 6 2.1469 -2.9314 2.4174 7 7 1.6099 -4.2941 2.4437 8 6 0.3672 -4.5779 3.1658 9 6 2.2695 -5.3026 1.7933 10 1 2.9852 -5.0685 1.0192 11 6 2.0180 -6.6258 2.1288 12 7 1.3474 -6.9109 3.2250 13 14 2.6379 -8.0024 1.0288 14 1 1.6040 -8.3290 0.0141 15 1 3.8824 -7.5674 0.3451 16 1 2.9204 -9.2053 1.8525 17 6 2.0750 -2.8336 -0.0807 18 6 1.5649 -2.0286 -1.2790 19 1 0.4754 -2.0552 -1.2958 20 6 2.1103 -2.6373 -2.5724 21 8 2.0068 -0.6742 -1.1663 22 1 -0.3632 0.5135 0.8902 23 1 -0.3632 0.5142 -0.8897 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6420 -0.2356 2.1399 26 1 3.1298 -0.6872 1.2711 27 1 0.4869 -2.2181 1.2425 28 1 1.8668 -2.4127 3.3342 29 1 3.2335 -2.9704 2.3396 30 1 0.6030 -4.9322 4.1694 31 1 -0.2301 -3.6685 3.2325 32 1 -0.1958 -5.3441 2.6330 33 1 1.1720 -7.8355 3.4597 34 1 3.1650 -2.8425 -0.0870 35 1 1.7011 -3.8557 -0.1410 36 1 3.1998 -2.6109 -2.5552 37 1 1.7732 -3.6703 -2.6582 38 1 1.7465 -2.0642 -3.4253 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724863373.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:18 Heat of formation + Delta-G solvation = -57.700536 kcal Electronic energy + Delta-G solvation = -17054.416026 eV Core-core repulsion = 14510.344736 eV Total energy + Delta-G solvation = -2544.071290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86951 -37.74056 -34.95136 -34.16090 -32.72809 -30.51812 -28.04132 -27.45917 -27.28312 -23.99743 -23.11247 -21.61781 -20.15361 -18.63957 -17.23861 -16.95473 -16.78540 -16.02953 -15.51918 -15.17439 -15.09702 -14.52077 -14.26059 -13.79260 -13.53579 -13.23127 -13.09358 -12.81013 -12.78202 -12.73908 -12.55076 -12.52494 -12.19032 -12.01758 -11.95191 -11.83939 -11.61830 -11.16280 -10.81986 -10.61777 -10.24414 -8.74716 -7.78762 -5.23312 1.45763 1.46441 1.54899 2.52352 2.91317 3.33494 3.66621 3.85070 3.98109 4.09326 4.10912 4.29063 4.38762 4.49466 4.56334 4.65526 4.68393 4.78132 4.84573 4.88935 4.89792 5.06709 5.12039 5.12956 5.15939 5.21966 5.30971 5.35895 5.43965 5.53245 5.64413 5.66046 5.74700 6.35299 6.43213 7.19030 7.92418 8.35282 9.25038 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030714 B = 0.008537 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.427292 B = 3279.138191 C = 3887.665799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.085 3.915 3 H 0.117 0.883 4 C -0.137 4.137 5 C -0.098 4.098 6 C 0.155 3.845 7 N -0.619 5.619 8 C 0.181 3.819 9 C -0.242 4.242 10 H 0.074 0.926 11 C -0.062 4.062 12 N -0.944 5.944 13 Si 0.961 3.039 14 H -0.287 1.287 15 H -0.269 1.269 16 H -0.298 1.298 17 C -0.128 4.128 18 C 0.086 3.914 19 H 0.057 0.943 20 C -0.141 4.141 21 O -0.391 6.391 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.000 1.000 31 H 0.025 0.975 32 H 0.018 0.982 33 H 0.245 0.755 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 13.282 -7.406 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.028 3.972 3 H 0.135 0.865 4 C -0.175 4.175 5 C -0.119 4.119 6 C 0.029 3.971 7 N -0.342 5.342 8 C 0.036 3.964 9 C -0.372 4.372 10 H 0.092 0.908 11 C -0.256 4.256 12 N -0.593 5.593 13 Si 0.790 3.210 14 H -0.214 1.214 15 H -0.193 1.193 16 H -0.225 1.225 17 C -0.166 4.166 18 C 0.029 3.971 19 H 0.074 0.926 20 C -0.198 4.198 21 O -0.311 6.311 22 H 0.098 0.902 23 H 0.085 0.915 24 H 0.067 0.933 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.941 13.217 -7.468 15.210 hybrid contribution 0.053 -1.419 0.094 1.423 sum -0.889 11.798 -7.374 13.941 Atomic orbital electron populations 1.22406 0.95912 1.02245 1.03259 1.22301 0.94005 0.96463 0.84419 0.86488 1.22171 1.01348 0.94943 0.99045 1.21697 0.99736 0.94546 0.95903 1.20930 0.96137 0.84353 0.95658 1.44159 1.24552 1.04507 1.60970 1.20498 0.86372 0.94920 0.94634 1.19535 1.19371 0.86147 1.12147 0.90780 1.25701 1.01861 0.99818 0.98228 1.70262 1.46938 1.17318 1.24762 0.85333 0.78293 0.79165 0.78166 1.21394 1.19339 1.22466 1.22101 1.00033 0.99746 0.94705 1.22101 0.97768 0.81870 0.95410 0.92555 1.21744 1.01709 1.00636 0.95711 1.87892 1.74385 1.24850 1.44007 0.90162 0.91529 0.93253 0.89675 0.91756 0.92329 0.93568 0.94543 0.98199 0.95611 0.96329 0.94580 0.93309 0.91996 0.92339 0.90979 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.93 8.65 71.98 0.62 -3.31 16 2 C 0.09 2.05 3.91 30.63 0.12 2.17 16 3 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.14 -3.61 4.93 30.69 0.15 -3.46 16 5 C -0.10 -3.30 2.17 -10.67 -0.02 -3.33 16 6 C 0.16 6.28 5.15 86.38 0.45 6.72 16 7 N -0.62 -31.05 2.82 -726.93 -2.05 -33.09 16 8 C 0.18 9.11 8.96 127.77 1.15 10.25 16 9 C -0.24 -13.18 8.18 84.03 0.69 -12.49 16 10 H 0.07 3.93 6.91 -2.91 -0.02 3.91 16 11 C -0.06 -3.53 5.12 84.86 0.43 -3.09 16 12 N -0.94 -56.80 10.48 21.65 0.23 -56.57 16 13 Si 0.96 45.68 29.57 68.60 2.03 47.71 16 14 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 17 C -0.13 -4.52 3.79 30.69 0.12 -4.40 16 18 C 0.09 2.56 2.93 30.63 0.09 2.65 16 19 H 0.06 1.66 6.34 -2.38 -0.02 1.65 16 20 C -0.14 -3.70 9.57 71.98 0.69 -3.01 16 21 O -0.39 -11.34 10.24 -148.98 -1.53 -12.87 16 22 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.25 4.98 -2.39 -0.01 1.24 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 2.06 6.62 -2.38 -0.02 2.04 16 28 H 0.05 1.74 8.07 -2.39 -0.02 1.72 16 29 H 0.04 1.52 8.04 -2.39 -0.02 1.50 16 30 H 0.00 -0.02 7.44 -2.38 -0.02 -0.03 16 31 H 0.03 1.10 8.03 -2.39 -0.02 1.08 16 32 H 0.02 1.00 7.08 -2.39 -0.02 0.98 16 33 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.06 2.56 6.39 -2.39 -0.02 2.55 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -62.40 289.30 4.17 -58.24 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.00 Total: 7.88 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 4.48 Total: -11.30 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -1.82 Total: -89.66 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.53 Total: -12.87 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -62.40 4.17 -58.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724863373.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.535 kcal (2) G-P(sol) polarization free energy of solvation -62.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds