Wall clock time and date at job start Sun Mar 29 2020 21:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46901 * 2 1 4 4 N 1.46905 * 109.46985 * 184.62236 * 3 2 1 5 5 C 1.46904 * 110.99950 * 62.81101 * 4 3 2 6 6 C 1.52999 * 109.47246 * 76.75669 * 5 4 3 7 7 H 1.09004 * 109.46759 * 53.09407 * 6 5 4 8 8 O 1.42900 * 109.47407 * 293.09492 * 6 5 4 9 9 C 1.50698 * 109.46846 * 173.09354 * 6 5 4 10 10 H 1.07994 * 120.00423 * 359.97438 * 9 6 5 11 11 C 1.37884 * 119.99658 * 180.02562 * 9 6 5 12 12 N 1.31509 * 120.00097 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 119.99910 * 179.97438 * 11 9 6 14 14 H 1.48499 * 109.47452 * 59.99692 * 13 11 9 15 15 H 1.48500 * 109.47411 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47313 * 300.00049 * 13 11 9 17 17 C 1.46892 * 111.00223 * 298.85300 * 4 3 2 18 18 C 1.52997 * 109.47333 * 288.15134 * 17 4 3 19 19 C 1.53009 * 117.49777 * 244.43383 * 18 17 4 20 20 C 1.53006 * 117.49970 * 175.77905 * 18 17 4 21 21 H 1.09001 * 109.47113 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47628 * 300.00314 * 1 2 3 23 23 H 1.08998 * 109.46877 * 60.00776 * 1 2 3 24 24 H 1.08996 * 109.47628 * 239.99685 * 2 1 3 25 25 H 1.09007 * 109.46865 * 119.99811 * 2 1 3 26 26 H 1.09000 * 109.47789 * 64.62655 * 3 2 1 27 27 H 1.08997 * 109.47326 * 304.62250 * 3 2 1 28 28 H 1.09000 * 109.46953 * 316.75877 * 5 4 3 29 29 H 1.09000 * 109.47224 * 196.76195 * 5 4 3 30 30 H 0.96707 * 113.99478 * 300.00034 * 8 6 5 31 31 H 0.97001 * 119.99856 * 179.97438 * 12 11 9 32 32 H 1.09007 * 109.47063 * 48.15149 * 17 4 3 33 33 H 1.09002 * 109.47669 * 168.14711 * 17 4 3 34 34 H 1.08995 * 115.55268 * 30.10511 * 18 17 4 35 35 H 1.09003 * 117.49691 * 359.97438 * 19 18 17 36 36 H 1.09001 * 117.49681 * 145.01830 * 19 18 17 37 37 H 1.08998 * 117.49373 * 214.97802 * 20 18 17 38 38 H 1.09000 * 117.49589 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5047 1.4440 -0.1116 5 6 3.9363 0.8509 -1.3844 6 6 3.7230 1.8591 -2.5153 7 1 4.2074 2.8012 -2.2582 8 8 2.3231 2.0783 -2.7003 9 6 4.3196 1.3186 -3.7892 10 1 4.8030 0.3529 -3.7920 11 6 4.2493 2.0577 -4.9511 12 7 3.6620 3.2344 -4.9475 13 14 4.9894 1.3881 -6.5301 14 1 4.3298 0.1047 -6.8808 15 1 4.7834 2.3672 -7.6275 16 1 6.4442 1.1604 -6.3373 17 6 4.1203 0.7508 1.0278 18 6 3.9778 1.6105 2.2853 19 6 5.2614 2.1389 2.9290 20 6 4.4709 1.0168 3.6066 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.7459 1.9319 0.9285 27 1 1.6106 1.9797 -0.8456 28 1 3.3517 -0.0473 -1.5834 29 1 4.9931 0.5906 -1.3242 30 1 1.8274 1.2808 -2.9317 31 1 3.6129 3.7544 -5.7648 32 1 3.6217 -0.2061 1.1834 33 1 5.1770 0.5805 0.8219 34 1 3.0969 2.2515 2.3193 35 1 6.2073 1.8737 2.4567 36 1 5.2248 3.1275 3.3866 37 1 3.9145 1.2677 4.5096 38 1 4.8964 0.0137 3.5798 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809569879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:55 Heat of formation + Delta-G solvation = -30.370211 kcal Electronic energy + Delta-G solvation = -16501.600227 eV Core-core repulsion = 13958.714070 eV Total energy + Delta-G solvation = -2542.886158 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.59690 -36.59378 -34.80206 -32.29937 -32.06590 -28.68904 -26.65083 -25.32872 -22.98436 -22.23620 -21.80034 -20.07976 -19.12204 -16.95247 -15.83942 -15.27331 -14.78188 -14.55582 -14.41697 -14.06630 -13.69336 -13.23323 -13.02652 -12.45752 -12.03796 -11.74455 -11.47507 -11.38811 -11.13265 -11.01710 -10.96903 -10.91324 -10.70200 -10.49275 -10.22433 -10.17350 -9.90267 -9.64666 -8.98573 -8.52070 -8.07956 -7.40443 -5.96168 -4.14420 3.30792 3.36294 3.37793 3.91866 4.37658 4.57720 4.94078 5.08459 5.21199 5.29823 5.31739 5.34139 5.62584 5.66008 5.69108 5.80090 5.84876 5.94450 6.00100 6.07479 6.18007 6.18303 6.21015 6.32438 6.38365 6.42847 6.50604 6.70840 6.82629 7.05940 7.63205 7.80938 7.81224 8.04864 8.26709 8.89241 9.43274 9.62829 11.07773 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028497 B = 0.006877 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.323414 B = 4070.351117 C = 4648.822728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.164 4.164 3 C 0.043 3.957 4 N -0.526 5.526 5 C 0.027 3.973 6 C 0.239 3.761 7 H 0.063 0.937 8 O -0.558 6.558 9 C -0.573 4.573 10 H 0.053 0.947 11 C 0.081 3.919 12 N -0.858 5.858 13 Si 0.888 3.112 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.077 3.923 18 C -0.135 4.135 19 C -0.176 4.176 20 C -0.189 4.189 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.110 0.890 28 H 0.030 0.970 29 H 0.062 0.938 30 H 0.339 0.661 31 H 0.260 0.740 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 -5.408 12.395 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.203 4.203 3 C -0.085 4.085 4 N -0.248 5.248 5 C -0.100 4.100 6 C 0.181 3.819 7 H 0.081 0.919 8 O -0.360 6.360 9 C -0.612 4.612 10 H 0.071 0.929 11 C -0.126 4.126 12 N -0.493 5.493 13 Si 0.715 3.285 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.052 4.052 18 C -0.154 4.154 19 C -0.213 4.213 20 C -0.227 4.227 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.182 0.818 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.623 -4.109 12.440 13.201 hybrid contribution 0.159 -1.855 -0.979 2.103 sum -1.464 -5.964 11.461 13.003 Atomic orbital electron populations 1.21645 0.95894 1.00815 1.01801 1.22185 0.96252 1.00363 1.01488 1.22581 0.87694 0.94738 1.03494 1.62228 1.07268 1.53793 1.01548 1.23155 0.99084 0.97778 0.89967 1.19355 0.79621 0.94081 0.88853 0.91927 1.86556 1.21716 1.36282 1.91456 1.21611 1.39869 1.04733 0.94953 0.92919 1.25013 0.94199 0.94512 0.98836 1.70071 1.40676 1.10981 1.27604 0.86763 0.79792 0.78781 0.83145 1.20253 1.21215 1.20215 1.21766 0.99170 0.94229 0.89986 1.22280 0.98412 1.02269 0.92404 1.22967 0.96150 0.98003 1.04190 1.22958 1.05007 0.98265 0.96455 0.93576 0.93252 0.92257 0.91586 0.92921 0.92452 0.87170 0.95202 0.91946 0.81794 0.92989 0.94690 0.91539 0.87684 0.88952 0.89203 0.89264 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.16 -2.41 5.31 -26.73 -0.14 -2.55 16 3 C 0.04 0.72 4.99 -3.82 -0.02 0.70 16 4 N -0.53 -9.64 4.59 -234.63 -1.08 -10.72 16 5 C 0.03 0.57 4.62 -3.82 -0.02 0.55 16 6 C 0.24 6.04 3.04 -27.88 -0.08 5.96 16 7 H 0.06 1.81 8.14 -51.93 -0.42 1.38 16 8 O -0.56 -13.94 9.92 -35.23 -0.35 -14.29 16 9 C -0.57 -15.73 8.76 -34.44 -0.30 -16.03 16 10 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 11 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 12 N -0.86 -25.46 12.84 55.43 0.71 -24.75 16 13 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.08 1.18 5.10 -3.83 -0.02 1.16 16 18 C -0.14 -1.85 5.72 -90.61 -0.52 -2.37 16 19 C -0.18 -2.18 10.18 -26.69 -0.27 -2.45 16 20 C -0.19 -2.14 10.25 -26.69 -0.27 -2.41 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 1.06 5.97 -51.93 -0.31 0.75 16 25 H 0.05 0.74 6.43 -51.92 -0.33 0.41 16 26 H 0.06 0.90 6.66 -51.93 -0.35 0.56 16 27 H 0.11 2.13 5.40 -51.93 -0.28 1.85 16 28 H 0.03 0.60 5.68 -51.93 -0.29 0.30 16 29 H 0.06 1.29 7.62 -51.93 -0.40 0.90 16 30 H 0.34 7.64 9.04 45.56 0.41 8.05 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.04 0.52 5.90 -51.93 -0.31 0.22 16 33 H 0.07 1.04 7.41 -51.93 -0.38 0.65 16 34 H 0.11 1.50 6.76 -51.93 -0.35 1.15 16 35 H 0.09 1.14 8.03 -51.93 -0.42 0.73 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 299.42 15.07 4.51 4.51 Total: -1.00 -29.14 299.42 -8.11 -37.25 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.51 Total: 8.55 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -1.38 Total: -16.75 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.37 Total: -35.47 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.35 Total: -14.29 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.14 -8.11 -37.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809569879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.881 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds