Wall clock time and date at job start Sun Mar 29 2020 21:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46901 * 2 1 4 4 N 1.46905 * 109.46985 * 184.62236 * 3 2 1 5 5 C 1.46904 * 110.99950 * 62.81101 * 4 3 2 6 6 C 1.52999 * 109.47246 * 76.75669 * 5 4 3 7 7 H 1.09004 * 109.46759 * 53.09407 * 6 5 4 8 8 O 1.42900 * 109.47407 * 293.09492 * 6 5 4 9 9 C 1.50698 * 109.46846 * 173.09354 * 6 5 4 10 10 H 1.07994 * 120.00423 * 359.97438 * 9 6 5 11 11 C 1.37884 * 119.99658 * 180.02562 * 9 6 5 12 12 N 1.31509 * 120.00097 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 119.99910 * 179.97438 * 11 9 6 14 14 H 1.48499 * 109.47452 * 59.99692 * 13 11 9 15 15 H 1.48500 * 109.47411 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47313 * 300.00049 * 13 11 9 17 17 C 1.46892 * 111.00223 * 298.85300 * 4 3 2 18 18 C 1.52997 * 109.47333 * 288.15134 * 17 4 3 19 19 C 1.53009 * 117.49777 * 244.43383 * 18 17 4 20 20 C 1.53006 * 117.49970 * 175.77905 * 18 17 4 21 21 H 1.09001 * 109.47113 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47628 * 300.00314 * 1 2 3 23 23 H 1.08998 * 109.46877 * 60.00776 * 1 2 3 24 24 H 1.08996 * 109.47628 * 239.99685 * 2 1 3 25 25 H 1.09007 * 109.46865 * 119.99811 * 2 1 3 26 26 H 1.09000 * 109.47789 * 64.62655 * 3 2 1 27 27 H 1.08997 * 109.47326 * 304.62250 * 3 2 1 28 28 H 1.09000 * 109.46953 * 316.75877 * 5 4 3 29 29 H 1.09000 * 109.47224 * 196.76195 * 5 4 3 30 30 H 0.96707 * 113.99478 * 300.00034 * 8 6 5 31 31 H 0.97001 * 119.99856 * 179.97438 * 12 11 9 32 32 H 1.09007 * 109.47063 * 48.15149 * 17 4 3 33 33 H 1.09002 * 109.47669 * 168.14711 * 17 4 3 34 34 H 1.08995 * 115.55268 * 30.10511 * 18 17 4 35 35 H 1.09003 * 117.49691 * 359.97438 * 19 18 17 36 36 H 1.09001 * 117.49681 * 145.01830 * 19 18 17 37 37 H 1.08998 * 117.49373 * 214.97802 * 20 18 17 38 38 H 1.09000 * 117.49589 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5047 1.4440 -0.1116 5 6 3.9363 0.8509 -1.3844 6 6 3.7230 1.8591 -2.5153 7 1 4.2074 2.8012 -2.2582 8 8 2.3231 2.0783 -2.7003 9 6 4.3196 1.3186 -3.7892 10 1 4.8030 0.3529 -3.7920 11 6 4.2493 2.0577 -4.9511 12 7 3.6620 3.2344 -4.9475 13 14 4.9894 1.3881 -6.5301 14 1 4.3298 0.1047 -6.8808 15 1 4.7834 2.3672 -7.6275 16 1 6.4442 1.1604 -6.3373 17 6 4.1203 0.7508 1.0278 18 6 3.9778 1.6105 2.2853 19 6 5.2614 2.1389 2.9290 20 6 4.4709 1.0168 3.6066 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.7459 1.9319 0.9285 27 1 1.6106 1.9797 -0.8456 28 1 3.3517 -0.0473 -1.5834 29 1 4.9931 0.5906 -1.3242 30 1 1.8274 1.2808 -2.9317 31 1 3.6129 3.7544 -5.7648 32 1 3.6217 -0.2061 1.1834 33 1 5.1770 0.5805 0.8219 34 1 3.0969 2.2515 2.3193 35 1 6.2073 1.8737 2.4567 36 1 5.2248 3.1275 3.3866 37 1 3.9145 1.2677 4.5096 38 1 4.8964 0.0137 3.5798 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809569879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:55 Heat of formation + Delta-G solvation = -49.926774 kcal Electronic energy + Delta-G solvation = -16502.448264 eV Core-core repulsion = 13958.714070 eV Total energy + Delta-G solvation = -2543.734194 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97822 -37.93070 -36.47636 -34.20898 -33.56867 -30.48313 -27.94715 -27.10595 -24.46763 -23.28452 -23.14943 -21.58989 -20.42365 -18.99076 -17.10490 -16.72582 -16.62640 -16.34595 -15.74016 -15.42852 -15.17715 -14.79772 -14.37395 -14.13958 -13.35236 -13.19070 -12.93649 -12.77315 -12.73659 -12.65522 -12.34017 -12.25961 -12.16189 -12.09479 -11.81032 -11.41551 -11.19540 -10.98061 -10.76190 -10.64778 -9.97095 -8.88128 -8.10155 -6.36402 1.41394 1.43092 1.51178 2.39930 2.88052 3.15098 3.26647 3.86890 4.05264 4.07658 4.16435 4.22970 4.28706 4.45909 4.49947 4.54217 4.55872 4.71981 4.75869 4.81804 4.89317 5.00114 5.06244 5.09182 5.14851 5.28653 5.30256 5.35794 5.39564 5.54358 5.66605 5.81366 6.07454 6.37332 6.44229 6.77368 7.36152 7.58706 8.93715 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028497 B = 0.006877 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.323414 B = 4070.351117 C = 4648.822728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.154 4.154 3 C 0.047 3.953 4 N -0.544 5.544 5 C 0.046 3.954 6 C 0.242 3.758 7 H 0.017 0.983 8 O -0.567 6.567 9 C -0.588 4.588 10 H 0.058 0.942 11 C 0.027 3.973 12 N -0.899 5.899 13 Si 0.959 3.041 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.270 1.270 17 C 0.081 3.919 18 C -0.155 4.155 19 C -0.182 4.182 20 C -0.164 4.164 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.349 0.651 31 H 0.261 0.739 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 -6.987 13.375 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.193 4.193 3 C -0.081 4.081 4 N -0.266 5.266 5 C -0.081 4.081 6 C 0.184 3.816 7 H 0.035 0.965 8 O -0.370 6.370 9 C -0.626 4.626 10 H 0.076 0.924 11 C -0.176 4.176 12 N -0.536 5.536 13 Si 0.783 3.217 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.195 1.195 17 C -0.046 4.046 18 C -0.173 4.173 19 C -0.219 4.219 20 C -0.201 4.201 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.193 0.807 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.594 -5.707 13.437 14.686 hybrid contribution 0.135 -1.325 -1.216 1.803 sum -1.459 -7.032 12.222 14.175 Atomic orbital electron populations 1.21616 0.94313 1.01898 1.01956 1.22066 0.97585 0.98440 1.01215 1.22464 0.86754 0.96108 1.02737 1.62106 1.08458 1.54604 1.01470 1.22728 0.99050 0.96481 0.89889 1.19122 0.79359 0.93003 0.90141 0.96516 1.86511 1.21619 1.37140 1.91762 1.22018 1.39692 1.04885 0.95990 0.92411 1.25881 0.94543 0.94655 1.02481 1.70219 1.42373 1.12472 1.28524 0.85634 0.79113 0.78289 0.78636 1.19147 1.21050 1.19471 1.21756 0.98615 0.94786 0.89459 1.22183 0.98953 1.03236 0.92969 1.23047 0.95459 0.99095 1.04320 1.23037 1.03396 0.98273 0.95432 0.92010 0.92070 0.93180 0.93096 0.91737 0.91265 0.90016 0.94339 0.92287 0.80665 0.93053 0.93690 0.92019 0.88436 0.89249 0.88503 0.87516 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.15 -4.31 5.31 30.59 0.16 -4.15 16 3 C 0.05 1.56 4.99 86.30 0.43 1.99 16 4 N -0.54 -19.93 4.59 -896.23 -4.11 -24.04 16 5 C 0.05 1.93 4.62 86.30 0.40 2.33 16 6 C 0.24 12.60 3.04 29.85 0.09 12.69 16 7 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 8 O -0.57 -29.18 9.92 -148.98 -1.48 -30.66 16 9 C -0.59 -32.61 8.76 25.60 0.22 -32.39 16 10 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 11 C 0.03 1.52 5.40 84.66 0.46 1.97 16 12 N -0.90 -54.50 12.84 21.45 0.28 -54.23 16 13 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 C 0.08 2.42 5.10 86.30 0.44 2.86 16 18 C -0.15 -4.00 5.72 -10.79 -0.06 -4.06 16 19 C -0.18 -4.21 10.18 30.62 0.31 -3.90 16 20 C -0.16 -3.23 10.25 30.62 0.31 -2.92 16 21 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.05 1.58 5.97 -2.39 -0.01 1.56 16 25 H 0.06 1.66 6.43 -2.38 -0.02 1.64 16 26 H 0.07 2.12 6.66 -2.39 -0.02 2.11 16 27 H 0.08 3.21 5.40 -2.39 -0.01 3.20 16 28 H 0.04 1.53 5.68 -2.39 -0.01 1.52 16 29 H 0.06 2.46 7.62 -2.39 -0.02 2.44 16 30 H 0.35 16.09 9.04 -74.05 -0.67 15.42 16 31 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.05 1.24 5.90 -2.38 -0.01 1.23 16 33 H 0.06 1.87 7.41 -2.39 -0.02 1.85 16 34 H 0.10 2.67 6.76 -2.39 -0.02 2.65 16 35 H 0.09 2.11 8.03 -2.39 -0.02 2.09 16 36 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -62.82 299.42 0.56 -62.26 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.37 Total: 29.17 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 3.48 Total: -28.17 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -3.84 Total: -78.27 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -1.48 Total: -30.66 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -62.82 0.56 -62.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809569879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.336 kcal (2) G-P(sol) polarization free energy of solvation -62.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds