Wall clock time and date at job start Sun Mar 29 2020 21:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46894 * 2 1 4 4 H 1.09010 * 109.49969 * 54.92009 * 3 2 1 5 5 C 1.53118 * 109.50289 * 294.80479 * 3 2 1 6 6 C 1.53118 * 109.15767 * 182.40560 * 5 3 2 7 7 C 1.53035 * 109.28204 * 57.65087 * 6 5 3 8 8 N 1.46846 * 109.52534 * 300.82187 * 7 6 5 9 9 C 1.46893 * 111.00414 * 185.83662 * 8 7 6 10 10 C 1.53002 * 109.47397 * 169.66662 * 9 8 7 11 11 H 1.08997 * 109.46861 * 60.66372 * 10 9 8 12 12 O 1.42900 * 109.46850 * 300.66111 * 10 9 8 13 13 C 1.50704 * 109.46691 * 180.66362 * 10 9 8 14 14 H 1.07994 * 120.00391 * 359.97438 * 13 10 9 15 15 C 1.37887 * 119.99252 * 180.02562 * 13 10 9 16 16 N 1.31517 * 119.99540 * 180.02562 * 15 13 10 17 17 Si 1.86795 * 120.00237 * 0.02562 * 15 13 10 18 18 H 1.48494 * 109.47387 * 90.00036 * 17 15 13 19 19 H 1.48503 * 109.47066 * 210.00074 * 17 15 13 20 20 H 1.48502 * 109.47012 * 329.99841 * 17 15 13 21 21 C 1.46854 * 111.19902 * 61.73657 * 8 7 6 22 22 H 1.08994 * 109.47143 * 60.00205 * 1 2 3 23 23 H 1.09004 * 109.46806 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47174 * 299.99649 * 1 2 3 25 25 H 1.08995 * 109.47412 * 239.99860 * 2 1 3 26 26 H 1.09004 * 109.47173 * 119.99904 * 2 1 3 27 27 H 1.08999 * 109.52046 * 302.30586 * 5 3 2 28 28 H 1.08998 * 109.52352 * 62.43551 * 5 3 2 29 29 H 1.09003 * 109.50273 * 177.59573 * 6 5 3 30 30 H 1.09003 * 109.50242 * 297.70752 * 6 5 3 31 31 H 1.08992 * 109.46513 * 180.80223 * 7 6 5 32 32 H 1.09005 * 109.46175 * 60.83355 * 7 6 5 33 33 H 1.09001 * 109.46878 * 49.66748 * 9 8 7 34 34 H 1.09002 * 109.47211 * 289.66842 * 9 8 7 35 35 H 0.96699 * 114.00142 * 299.99821 * 12 10 9 36 36 H 0.96994 * 119.99511 * 180.02562 * 16 15 13 37 37 H 1.09006 * 109.45674 * 58.27617 * 21 8 7 38 38 H 1.09001 * 109.46198 * 178.25545 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9824 0.8409 5 6 1.6395 2.1263 -1.3102 6 6 2.2048 3.5492 -1.3277 7 6 3.7252 3.4909 -1.1634 8 7 4.0568 2.8288 0.1047 9 6 5.5022 2.8778 0.3620 10 6 5.7814 2.4158 1.7936 11 1 5.4346 1.3901 1.9185 12 8 5.0922 3.2669 2.7116 13 6 7.2628 2.4816 2.0627 14 1 7.9376 2.8187 1.2899 15 6 7.7566 2.1103 3.2954 16 7 9.0493 2.1682 3.5305 17 14 6.5896 1.5252 4.6314 18 1 6.4217 0.0531 4.5322 19 1 7.1484 1.8710 5.9631 20 1 5.2708 2.1864 4.4612 21 6 3.5651 1.4452 0.1258 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.0423 1.5639 -2.1525 28 1 0.5526 2.1642 -1.3839 29 1 1.9593 4.0267 -2.2763 30 1 1.7720 4.1229 -0.5081 31 1 4.1293 4.5031 -1.1611 32 1 4.1586 2.9288 -1.9907 33 1 5.8597 3.8995 0.2337 34 1 6.0185 2.2216 -0.3387 35 1 5.3513 4.1968 2.6563 36 1 9.3967 1.9067 4.3975 37 1 3.9993 0.8928 -0.7076 38 1 3.8528 0.9718 1.0646 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809571463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:40 Heat of formation + Delta-G solvation = -66.887394 kcal Electronic energy + Delta-G solvation = -16677.199976 eV Core-core repulsion = 14132.730315 eV Total energy + Delta-G solvation = -2544.469662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.07602 -36.23551 -34.39792 -32.18894 -32.07548 -29.27585 -28.39721 -25.33047 -23.78562 -22.92012 -20.86058 -20.01001 -19.46409 -17.28290 -15.44435 -15.05668 -14.71484 -14.65890 -14.56901 -14.08628 -13.60420 -13.45670 -13.08899 -12.89604 -12.56315 -12.38127 -11.92517 -11.47503 -11.43677 -11.02076 -10.98983 -10.89142 -10.78260 -10.43091 -10.38275 -10.15784 -9.96035 -9.70175 -8.95607 -8.58409 -8.18519 -7.69445 -6.10041 -4.20824 3.41646 3.51213 3.79734 4.32269 4.57411 4.84649 4.93955 5.00902 5.18867 5.25640 5.31982 5.35963 5.60181 5.69007 5.75134 5.75445 5.86742 5.91086 5.93496 5.95191 6.04007 6.09856 6.13734 6.17495 6.27566 6.30735 6.38554 6.50429 6.62538 6.67644 7.34070 7.47627 7.67721 7.76474 8.33208 8.87190 9.16969 9.55520 11.00745 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032574 B = 0.007500 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.370478 B = 3732.653103 C = 4271.873085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.079 0.921 5 C -0.114 4.114 6 C -0.115 4.115 7 C 0.055 3.945 8 N -0.529 5.529 9 C 0.041 3.959 10 C 0.202 3.798 11 H 0.051 0.949 12 O -0.570 6.570 13 C -0.565 4.565 14 H 0.070 0.930 15 C 0.083 3.917 16 N -0.895 5.895 17 Si 0.870 3.130 18 H -0.289 1.289 19 H -0.296 1.296 20 H -0.214 1.214 21 C 0.061 3.939 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.354 0.646 36 H 0.264 0.736 37 H 0.024 0.976 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.295 -0.725 -8.782 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.103 4.103 4 H 0.097 0.903 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.074 4.074 8 N -0.254 5.254 9 C -0.087 4.087 10 C 0.144 3.856 11 H 0.069 0.931 12 O -0.375 6.375 13 C -0.603 4.603 14 H 0.088 0.912 15 C -0.121 4.121 16 N -0.532 5.532 17 Si 0.697 3.303 18 H -0.215 1.215 19 H -0.223 1.223 20 H -0.137 1.137 21 C -0.067 4.067 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.199 0.801 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.679 -1.050 -8.132 17.693 hybrid contribution 0.555 -0.347 -0.206 0.686 sum -15.124 -1.397 -8.338 17.326 Atomic orbital electron populations 1.21788 0.96044 1.01144 1.01777 1.21543 0.95687 0.96649 1.01948 1.21214 0.95514 0.95352 0.98227 0.90309 1.21652 1.00037 0.96021 0.97407 1.21570 0.95534 0.96958 1.01249 1.22061 0.95610 0.99046 0.90659 1.61908 1.15899 1.16058 1.31488 1.22814 0.84908 1.00989 0.99977 1.19703 0.91544 0.90547 0.83808 0.93102 1.86652 1.68285 1.20913 1.61619 1.21543 0.91227 1.47279 1.00267 0.91157 1.24986 0.94971 0.93401 0.98725 1.69964 1.12702 1.46970 1.23580 0.87037 0.84873 0.78601 0.79833 1.21542 1.22295 1.13668 1.22122 0.94049 0.89581 1.00980 0.92739 0.93153 0.92739 0.92336 0.91817 0.92707 0.92104 0.92240 0.91205 0.91248 0.95840 0.91322 0.95235 0.80067 0.92637 0.95782 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.67 37.16 0.36 -1.12 16 2 C -0.12 -1.40 5.40 -26.73 -0.14 -1.55 16 3 C -0.08 -1.13 2.35 -90.54 -0.21 -1.35 16 4 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 5 C -0.11 -1.34 4.98 -26.61 -0.13 -1.47 16 6 C -0.12 -1.42 6.09 -26.65 -0.16 -1.58 16 7 C 0.05 0.80 5.46 -3.84 -0.02 0.78 16 8 N -0.53 -9.30 4.51 -234.67 -1.06 -10.35 16 9 C 0.04 0.82 4.56 -3.83 -0.02 0.80 16 10 C 0.20 4.78 2.18 -27.88 -0.06 4.72 16 11 H 0.05 1.25 5.89 -51.93 -0.31 0.95 16 12 O -0.57 -13.29 10.00 -35.23 -0.35 -13.64 16 13 C -0.57 -15.87 9.34 -34.43 -0.32 -16.19 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.08 2.43 5.47 -17.81 -0.10 2.33 16 16 N -0.89 -27.60 13.96 55.43 0.77 -26.82 16 17 Si 0.87 22.14 26.99 -169.99 -4.59 17.55 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 20 H -0.21 -5.36 5.31 56.52 0.30 -5.06 16 21 C 0.06 1.00 4.58 -3.83 -0.02 0.98 16 22 H 0.05 0.50 6.63 -51.93 -0.34 0.15 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.63 6.70 -51.93 -0.35 0.28 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.99 8.01 -51.93 -0.42 0.57 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 1.37 7.98 -51.93 -0.41 0.95 16 34 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 35 H 0.35 7.44 9.04 45.56 0.41 7.86 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 1.46 6.24 -51.93 -0.32 1.13 16 LS Contribution 291.40 15.07 4.39 4.39 Total: -1.00 -30.59 291.40 -7.71 -38.30 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.05 Total: 4.21 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.83 Total: -13.64 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.28 Total: -37.18 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.35 Total: -13.64 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.59 Total: 17.55 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.59 -7.71 -38.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.588 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds