Wall clock time and date at job start Sun Mar 29 2020 22:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.41605 * 113.99811 * 2 1 4 4 C 1.36931 * 119.99802 * 89.99902 * 3 2 1 5 5 H 1.08002 * 120.00098 * 180.02562 * 4 3 2 6 6 C 1.38812 * 120.00429 * 0.02562 * 4 3 2 7 7 N 1.31624 * 119.99535 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00187 * 180.27849 * 6 4 3 9 9 H 1.48497 * 109.47173 * 179.72427 * 8 6 4 10 10 H 1.48506 * 109.46866 * 299.71963 * 8 6 4 11 11 H 1.48501 * 109.47438 * 59.72083 * 8 6 4 12 12 C 1.46499 * 120.00076 * 270.00000 * 3 2 1 13 13 C 1.52997 * 109.47293 * 255.00244 * 12 3 2 14 14 H 1.09002 * 109.47313 * 54.99534 * 13 12 3 15 15 C 1.53005 * 109.47034 * 294.99806 * 13 12 3 16 16 C 1.52995 * 109.47338 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46885 * 60.00242 * 16 15 13 18 18 C 1.52997 * 109.47235 * 299.99708 * 17 16 15 19 19 H 1.08998 * 109.47410 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47289 * 300.00348 * 18 17 16 21 21 C 1.52997 * 109.47579 * 174.99919 * 13 12 3 22 22 H 1.09000 * 109.47579 * 299.99582 * 1 2 3 23 23 H 1.09003 * 109.46925 * 60.00437 * 1 2 3 24 24 H 1.09006 * 109.46826 * 179.97438 * 1 2 3 25 25 H 0.97005 * 119.99717 * 180.02562 * 7 6 4 26 26 H 1.09010 * 109.47119 * 14.99916 * 12 3 2 27 27 H 1.08997 * 109.47180 * 134.99804 * 12 3 2 28 28 H 1.09002 * 109.47247 * 300.00377 * 15 13 12 29 29 H 1.09002 * 109.46653 * 59.99944 * 15 13 12 30 30 H 1.09002 * 109.47343 * 299.99933 * 16 15 13 31 31 H 1.09000 * 109.46833 * 179.97438 * 16 15 13 32 32 H 1.08998 * 109.47359 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47382 * 59.99715 * 17 16 15 34 34 H 1.09000 * 109.47648 * 179.97438 * 20 18 17 35 35 H 1.09005 * 109.47159 * 300.00039 * 20 18 17 36 36 H 1.09002 * 109.47322 * 59.99983 * 20 18 17 37 37 H 1.09002 * 109.46849 * 299.99958 * 21 13 12 38 38 H 1.09002 * 109.47112 * 59.99493 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2833 1.9191 1.1859 5 1 2.7222 2.9059 1.1859 6 6 2.0016 1.2849 2.3881 7 7 1.4662 0.0824 2.3880 8 14 2.3742 2.1413 4.0057 9 1 1.9773 1.2617 5.1344 10 1 3.8287 2.4288 4.0900 11 1 1.6130 3.4143 4.0788 12 6 2.3028 1.9628 -1.2687 13 6 3.8109 1.9245 -1.5238 14 1 4.1600 0.8926 -1.4841 15 6 4.5303 2.7477 -0.4533 16 6 6.0384 2.7088 -0.7079 17 6 6.3377 3.2953 -2.0889 18 6 5.6184 2.4722 -3.1594 19 1 5.8320 2.8897 -4.1433 20 6 6.1079 1.0237 -3.1035 21 6 4.1098 2.5113 -2.9047 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.2690 -0.3607 3.2281 26 1 1.7841 1.4516 -2.0798 27 1 1.9688 2.9992 -1.2200 28 1 4.1812 3.7795 -0.4928 29 1 4.3174 2.3295 0.5306 30 1 6.3872 1.6769 -0.6680 31 1 6.5508 3.2956 0.0545 32 1 7.4120 3.2673 -2.2706 33 1 5.9889 4.3273 -2.1288 34 1 5.5952 0.4371 -3.8658 35 1 7.1824 0.9960 -3.2848 36 1 5.8947 0.6058 -2.1196 37 1 3.5973 1.9248 -3.6674 38 1 3.7607 3.5431 -2.9444 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810136519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:02 Heat of formation + Delta-G solvation = 6.682217 kcal Electronic energy + Delta-G solvation = -17105.315883 eV Core-core repulsion = 14564.036439 eV Total energy + Delta-G solvation = -2541.279444 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.84948 -35.89923 -33.07733 -31.81648 -31.01224 -29.19093 -26.40048 -25.52292 -24.96945 -22.12533 -21.71442 -20.07466 -18.20104 -17.30003 -15.30886 -15.21097 -14.29307 -14.23806 -13.87547 -13.53664 -13.32606 -13.21686 -12.70008 -12.23751 -12.20944 -11.74653 -11.38699 -11.19349 -11.12961 -10.86998 -10.73896 -10.69423 -10.54821 -10.35090 -10.06239 -9.99799 -9.59084 -9.38844 -9.09954 -8.77135 -8.16257 -6.86072 -5.63196 -3.08100 3.41312 3.45553 3.46935 4.19167 4.73133 5.08871 5.10253 5.16204 5.53317 5.64588 5.71553 5.75758 5.88371 5.95426 6.01568 6.07601 6.15205 6.22866 6.26962 6.34666 6.39144 6.47440 6.50108 6.58994 6.68895 6.72753 6.75955 6.85556 6.91384 7.11166 7.27772 7.31580 7.42647 7.72167 8.40554 9.35082 9.98147 10.40507 11.44389 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028210 B = 0.009230 C = 0.007580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.307693 B = 3032.743031 C = 3692.873499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.114 6.114 3 N -0.469 5.469 4 C -0.264 4.264 5 H 0.095 0.905 6 C 0.005 3.995 7 N -0.881 5.881 8 Si 0.898 3.102 9 H -0.290 1.290 10 H -0.282 1.282 11 H -0.285 1.285 12 C 0.165 3.835 13 C -0.098 4.098 14 H 0.071 0.929 15 C -0.120 4.120 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.088 4.088 19 H 0.058 0.942 20 C -0.150 4.150 21 C -0.108 4.108 22 H 0.047 0.953 23 H -0.004 1.004 24 H 0.055 0.945 25 H 0.248 0.752 26 H 0.047 0.953 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 4.428 -8.994 11.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.119 6.119 3 N -0.235 5.235 4 C -0.391 4.391 5 H 0.112 0.888 6 C -0.194 4.194 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.216 1.216 10 H -0.208 1.208 11 H -0.212 1.212 12 C 0.040 3.960 13 C -0.119 4.119 14 H 0.090 0.910 15 C -0.157 4.157 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.106 4.106 19 H 0.076 0.924 20 C -0.207 4.207 21 C -0.147 4.147 22 H 0.066 0.934 23 H 0.015 0.985 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.932 4.121 -8.844 11.418 hybrid contribution -0.256 0.495 0.912 1.069 sum 5.675 4.616 -7.931 10.790 Atomic orbital electron populations 1.22836 0.87741 0.99016 0.97497 1.90652 1.15601 1.09683 1.95965 1.45977 1.65586 1.10863 1.01112 1.19401 1.37601 0.99581 0.82560 0.88798 1.24881 1.00816 0.96265 0.97485 1.70163 1.45260 1.12606 1.24412 0.86452 0.78273 0.78544 0.83969 1.21616 1.20831 1.21167 1.20888 0.93249 0.94859 0.86999 1.21693 0.97615 0.99823 0.92722 0.91017 1.21874 0.92580 0.99159 1.02134 1.21608 0.98080 1.00642 0.95502 1.21557 0.98804 0.98909 0.95664 1.21050 0.95864 0.95875 0.97852 0.92364 1.21938 0.99797 0.96338 1.02672 1.21607 0.94684 1.00546 0.97821 0.93445 0.98546 0.92620 0.94151 0.93447 0.94763 0.93566 0.88057 0.92117 0.93046 0.93117 0.92575 0.93218 0.93592 0.91364 0.92757 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.63 101.05 1.07 1.78 16 2 O -0.11 -3.14 9.55 -11.47 -0.11 -3.25 16 3 N -0.47 -12.08 3.08 -59.91 -0.18 -12.26 16 4 C -0.26 -7.12 7.73 -15.06 -0.12 -7.24 16 5 H 0.09 2.39 6.31 -52.49 -0.33 2.06 16 6 C 0.01 0.15 5.49 -17.43 -0.10 0.06 16 7 N -0.88 -26.10 9.93 55.49 0.55 -25.55 16 8 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.17 3.43 5.64 -4.04 -0.02 3.41 16 13 C -0.10 -1.77 2.12 -90.62 -0.19 -1.96 16 14 H 0.07 1.43 6.43 -51.93 -0.33 1.10 16 15 C -0.12 -2.19 4.17 -26.73 -0.11 -2.31 16 16 C -0.12 -1.87 5.65 -26.74 -0.15 -2.02 16 17 C -0.11 -1.48 5.45 -26.73 -0.15 -1.63 16 18 C -0.09 -1.16 3.20 -90.60 -0.29 -1.45 16 19 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 20 C -0.15 -1.98 8.50 37.16 0.32 -1.66 16 21 C -0.11 -1.59 4.74 -26.71 -0.13 -1.71 16 22 H 0.05 1.26 7.29 -51.93 -0.38 0.88 16 23 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.10 2.22 5.22 -51.93 -0.27 1.95 16 30 H 0.06 0.96 6.43 -51.93 -0.33 0.63 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.02 4.81 -51.93 -0.25 0.77 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 287.38 15.07 4.33 4.33 Total: -1.00 -29.56 287.38 -6.83 -36.38 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.53 Total: -1.63 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 0.14 Total: -14.72 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.37 Total: -37.82 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.11 Total: -3.25 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.56 -6.83 -36.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810136519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.063 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds