Wall clock time and date at job start Sun Mar 29 2020 22:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.41605 * 113.99811 * 2 1 4 4 C 1.36931 * 119.99802 * 89.99902 * 3 2 1 5 5 H 1.08002 * 120.00098 * 180.02562 * 4 3 2 6 6 C 1.38812 * 120.00429 * 0.02562 * 4 3 2 7 7 N 1.31624 * 119.99535 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00187 * 180.27849 * 6 4 3 9 9 H 1.48497 * 109.47173 * 179.72427 * 8 6 4 10 10 H 1.48506 * 109.46866 * 299.71963 * 8 6 4 11 11 H 1.48501 * 109.47438 * 59.72083 * 8 6 4 12 12 C 1.46499 * 120.00076 * 270.00000 * 3 2 1 13 13 C 1.52997 * 109.47293 * 255.00244 * 12 3 2 14 14 H 1.09002 * 109.47313 * 54.99534 * 13 12 3 15 15 C 1.53005 * 109.47034 * 294.99806 * 13 12 3 16 16 C 1.52995 * 109.47338 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46885 * 60.00242 * 16 15 13 18 18 C 1.52997 * 109.47235 * 299.99708 * 17 16 15 19 19 H 1.08998 * 109.47410 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47289 * 300.00348 * 18 17 16 21 21 C 1.52997 * 109.47579 * 174.99919 * 13 12 3 22 22 H 1.09000 * 109.47579 * 299.99582 * 1 2 3 23 23 H 1.09003 * 109.46925 * 60.00437 * 1 2 3 24 24 H 1.09006 * 109.46826 * 179.97438 * 1 2 3 25 25 H 0.97005 * 119.99717 * 180.02562 * 7 6 4 26 26 H 1.09010 * 109.47119 * 14.99916 * 12 3 2 27 27 H 1.08997 * 109.47180 * 134.99804 * 12 3 2 28 28 H 1.09002 * 109.47247 * 300.00377 * 15 13 12 29 29 H 1.09002 * 109.46653 * 59.99944 * 15 13 12 30 30 H 1.09002 * 109.47343 * 299.99933 * 16 15 13 31 31 H 1.09000 * 109.46833 * 179.97438 * 16 15 13 32 32 H 1.08998 * 109.47359 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47382 * 59.99715 * 17 16 15 34 34 H 1.09000 * 109.47648 * 179.97438 * 20 18 17 35 35 H 1.09005 * 109.47159 * 300.00039 * 20 18 17 36 36 H 1.09002 * 109.47322 * 59.99983 * 20 18 17 37 37 H 1.09002 * 109.46849 * 299.99958 * 21 13 12 38 38 H 1.09002 * 109.47112 * 59.99493 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2833 1.9191 1.1859 5 1 2.7222 2.9059 1.1859 6 6 2.0016 1.2849 2.3881 7 7 1.4662 0.0824 2.3880 8 14 2.3742 2.1413 4.0057 9 1 1.9773 1.2617 5.1344 10 1 3.8287 2.4288 4.0900 11 1 1.6130 3.4143 4.0788 12 6 2.3028 1.9628 -1.2687 13 6 3.8109 1.9245 -1.5238 14 1 4.1600 0.8926 -1.4841 15 6 4.5303 2.7477 -0.4533 16 6 6.0384 2.7088 -0.7079 17 6 6.3377 3.2953 -2.0889 18 6 5.6184 2.4722 -3.1594 19 1 5.8320 2.8897 -4.1433 20 6 6.1079 1.0237 -3.1035 21 6 4.1098 2.5113 -2.9047 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.2690 -0.3607 3.2281 26 1 1.7841 1.4516 -2.0798 27 1 1.9688 2.9992 -1.2200 28 1 4.1812 3.7795 -0.4928 29 1 4.3174 2.3295 0.5306 30 1 6.3872 1.6769 -0.6680 31 1 6.5508 3.2956 0.0545 32 1 7.4120 3.2673 -2.2706 33 1 5.9889 4.3273 -2.1288 34 1 5.5952 0.4371 -3.8658 35 1 7.1824 0.9960 -3.2848 36 1 5.8947 0.6058 -2.1196 37 1 3.5973 1.9248 -3.6674 38 1 3.7607 3.5431 -2.9444 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810136519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:02 Heat of formation + Delta-G solvation = -9.428419 kcal Electronic energy + Delta-G solvation = -17106.014492 eV Core-core repulsion = 14564.036439 eV Total energy + Delta-G solvation = -2541.978054 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14874 -37.80428 -34.79792 -33.76765 -32.25823 -30.91846 -27.55618 -27.26001 -26.94021 -23.86263 -23.02721 -21.59923 -19.60066 -19.12731 -17.12294 -16.63767 -16.18987 -15.77042 -15.40159 -15.25157 -14.90129 -14.53394 -14.19568 -13.97519 -13.56827 -13.21815 -12.97726 -12.90349 -12.72724 -12.52291 -12.29810 -12.19958 -11.93514 -11.88897 -11.66536 -11.56488 -11.02206 -10.83511 -10.68041 -10.53792 -10.18110 -8.89217 -7.74498 -5.19565 1.46976 1.49610 1.54892 2.27212 2.72702 3.42127 3.93050 3.98115 4.02242 4.32882 4.47070 4.58133 4.62220 4.63222 4.70599 4.75538 4.77437 4.86731 4.90734 4.94572 5.01214 5.12965 5.17814 5.20995 5.24818 5.27484 5.33827 5.46688 5.53650 5.55724 5.60549 5.63513 5.84108 5.88875 6.31816 7.24169 7.98976 8.32888 9.33478 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028210 B = 0.009230 C = 0.007580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.307693 B = 3032.743031 C = 3692.873499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.148 6.148 3 N -0.483 5.483 4 C -0.258 4.258 5 H 0.106 0.894 6 C -0.057 4.057 7 N -0.917 5.917 8 Si 0.961 3.039 9 H -0.299 1.299 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.160 3.840 13 C -0.088 4.088 14 H 0.047 0.953 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.107 4.107 18 C -0.086 4.086 19 H 0.084 0.916 20 C -0.150 4.150 21 C -0.102 4.102 22 H 0.018 0.982 23 H 0.017 0.983 24 H 0.072 0.928 25 H 0.240 0.760 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.062 6.079 -10.536 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.152 6.152 3 N -0.251 5.251 4 C -0.386 4.386 5 H 0.123 0.877 6 C -0.252 4.252 7 N -0.564 5.564 8 Si 0.790 3.210 9 H -0.225 1.225 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.036 3.964 13 C -0.108 4.108 14 H 0.065 0.935 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.144 4.144 18 C -0.104 4.104 19 H 0.102 0.898 20 C -0.207 4.207 21 C -0.140 4.140 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.118 5.795 -10.419 13.885 hybrid contribution -0.610 -0.009 1.311 1.446 sum 6.508 5.787 -9.108 12.601 Atomic orbital electron populations 1.22734 0.86233 0.99999 0.96973 1.90545 1.17218 1.11343 1.96071 1.46297 1.66117 1.10226 1.02493 1.19793 1.35833 0.99719 0.83249 0.87675 1.25636 1.01772 0.97133 1.00704 1.70358 1.47421 1.14231 1.24346 0.85434 0.78302 0.77493 0.79807 1.22539 1.20076 1.20215 1.21178 0.95187 0.94737 0.85265 1.21511 0.95326 0.98834 0.95171 0.93458 1.21727 0.94907 0.98923 0.99855 1.21557 0.95786 1.00561 0.97646 1.21533 1.00113 0.99053 0.93719 1.21076 0.94366 0.95840 0.99113 0.89772 1.21918 1.00979 0.96465 1.01313 1.21558 0.96309 1.00903 0.95242 0.96326 0.96455 0.90922 0.95128 0.92654 0.93838 0.92960 0.92296 0.93084 0.92433 0.91189 0.91661 0.92833 0.91988 0.93894 0.91968 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.97 10.63 113.37 1.21 3.17 16 2 O -0.15 -8.25 9.55 -38.80 -0.37 -8.62 16 3 N -0.48 -25.13 3.08 -343.45 -1.06 -26.19 16 4 C -0.26 -14.05 7.73 84.03 0.65 -13.40 16 5 H 0.11 5.36 6.31 -2.91 -0.02 5.34 16 6 C -0.06 -3.23 5.49 84.86 0.47 -2.76 16 7 N -0.92 -55.96 9.93 21.65 0.22 -55.74 16 8 Si 0.96 45.49 29.55 68.60 2.03 47.52 16 9 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.16 6.53 5.64 86.38 0.49 7.02 16 13 C -0.09 -3.10 2.12 -10.79 -0.02 -3.13 16 14 H 0.05 1.91 6.43 -2.39 -0.02 1.89 16 15 C -0.12 -4.17 4.17 30.59 0.13 -4.04 16 16 C -0.12 -3.46 5.65 30.59 0.17 -3.29 16 17 C -0.11 -2.46 5.45 30.59 0.17 -2.29 16 18 C -0.09 -1.95 3.20 -10.78 -0.03 -1.99 16 19 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 20 C -0.15 -3.59 8.50 71.98 0.61 -2.98 16 21 C -0.10 -2.71 4.74 30.61 0.14 -2.56 16 22 H 0.02 0.99 7.29 -2.39 -0.02 0.97 16 23 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 25 H 0.24 14.34 8.31 -92.70 -0.77 13.57 16 26 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 2.61 5.22 -2.39 -0.01 2.59 16 30 H 0.05 1.59 6.43 -2.39 -0.02 1.57 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 36 H 0.04 1.25 4.81 -2.39 -0.01 1.23 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -64.26 287.38 5.80 -58.47 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.01 Total: 10.81 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 3.97 Total: -26.24 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -0.84 Total: -81.93 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.37 Total: -8.62 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -64.26 5.80 -58.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810136519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.038 kcal (2) G-P(sol) polarization free energy of solvation -64.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds