Wall clock time and date at job start Sun Mar 29 2020 22:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41600 * 113.99855 * 2 1 4 4 C 1.36936 * 120.00053 * 264.48491 * 3 2 1 5 5 H 1.07995 * 120.00100 * 180.02562 * 4 3 2 6 6 C 1.38817 * 119.99644 * 0.02562 * 4 3 2 7 7 N 1.31617 * 119.99996 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47139 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47079 * 119.99777 * 8 6 4 11 11 H 1.48503 * 109.46789 * 239.99892 * 8 6 4 12 12 C 1.46500 * 120.00030 * 84.48785 * 3 2 1 13 13 C 1.52995 * 109.47109 * 99.42898 * 12 3 2 14 14 H 1.09000 * 109.46969 * 305.37645 * 13 12 3 15 15 C 1.52995 * 109.47614 * 65.38305 * 13 12 3 16 16 C 1.53006 * 109.47110 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.46931 * 299.99914 * 16 15 13 18 18 C 1.52995 * 109.47154 * 60.00113 * 17 16 15 19 19 H 1.09000 * 109.46779 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47318 * 60.00023 * 18 17 16 21 21 C 1.52993 * 109.47270 * 299.99678 * 18 17 16 22 22 H 1.08997 * 109.47046 * 174.90603 * 1 2 3 23 23 H 1.09003 * 109.47040 * 294.90742 * 1 2 3 24 24 H 1.08999 * 109.47119 * 54.90294 * 1 2 3 25 25 H 0.97008 * 120.00046 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47468 * 339.41987 * 12 3 2 27 27 H 1.09005 * 109.46886 * 219.41997 * 12 3 2 28 28 H 1.09000 * 109.46779 * 300.00174 * 15 13 12 29 29 H 1.09003 * 109.47318 * 60.00160 * 15 13 12 30 30 H 1.08997 * 109.47169 * 60.00243 * 16 15 13 31 31 H 1.08998 * 109.46805 * 179.97438 * 16 15 13 32 32 H 1.09003 * 109.47297 * 299.99746 * 17 16 15 33 33 H 1.09004 * 109.46924 * 180.02562 * 17 16 15 34 34 H 1.09003 * 109.46899 * 300.00327 * 20 18 17 35 35 H 1.08996 * 109.47395 * 180.02562 * 20 18 17 36 36 H 1.08999 * 109.47174 * 59.99221 * 20 18 17 37 37 H 1.09005 * 109.47230 * 179.97438 * 21 18 17 38 38 H 1.08997 * 109.47169 * 299.99855 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3875 1.8727 -1.1804 5 1 2.8271 2.8592 -1.1804 6 6 2.2103 1.1918 -2.3770 7 7 1.6749 -0.0106 -2.3770 8 14 2.7328 1.9815 -3.9873 9 1 3.3033 3.3257 -3.7172 10 1 3.7572 1.1317 -4.6458 11 1 1.5528 2.1151 -4.8789 12 6 2.1915 2.0123 1.2629 13 6 3.6440 1.8688 1.7215 14 1 3.9057 0.8120 1.7741 15 6 4.5658 2.5735 0.7244 16 6 6.0185 2.4294 1.1829 17 6 6.1822 3.0641 2.5653 18 6 5.2604 2.3594 3.5625 19 1 5.3775 2.8113 4.5474 20 6 5.6273 0.8758 3.6358 21 6 3.8079 2.5035 3.1041 22 1 -0.3633 -1.0236 -0.0912 23 1 -0.3633 0.4328 0.9321 24 1 -0.3633 0.5909 -0.8408 25 1 1.5507 -0.4863 -3.2132 26 1 1.5282 1.5945 2.0202 27 1 1.9588 3.0674 1.1182 28 1 4.4494 2.1210 -0.2604 29 1 4.3042 3.6304 0.6719 30 1 6.2798 1.3725 1.2350 31 1 6.6752 2.9311 0.4722 32 1 5.9209 4.1211 2.5131 33 1 7.2172 2.9618 2.8917 34 1 5.5106 0.4236 2.6508 35 1 4.9703 0.3737 4.3458 36 1 6.6621 0.7731 3.9623 37 1 3.1512 2.0011 3.8143 38 1 3.5465 3.5604 3.0519 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810136525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:07 Heat of formation + Delta-G solvation = 3.779387 kcal Electronic energy + Delta-G solvation = -17086.403822 eV Core-core repulsion = 14544.998502 eV Total energy + Delta-G solvation = -2541.405320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.84364 -35.90133 -33.05591 -31.84801 -31.01890 -29.19740 -26.39726 -25.50970 -25.01635 -22.12510 -21.73052 -20.05815 -18.20531 -17.31745 -15.32875 -15.18148 -14.26662 -14.24821 -13.88142 -13.56004 -13.35776 -13.22950 -12.70515 -12.30040 -12.22115 -11.74563 -11.39147 -11.17279 -11.13447 -10.88057 -10.75488 -10.71262 -10.56903 -10.33549 -10.02524 -9.96931 -9.59999 -9.40398 -9.18015 -8.76507 -8.24795 -6.86523 -5.62184 -3.07905 3.40784 3.46393 3.48815 4.18520 4.73474 5.08364 5.09650 5.15732 5.54489 5.63922 5.70915 5.75251 5.87975 5.94642 6.01028 6.07195 6.14399 6.22340 6.26555 6.33262 6.38605 6.44776 6.48152 6.56878 6.67378 6.71243 6.74926 6.84338 6.90068 7.06026 7.17378 7.27300 7.40410 7.73706 8.41292 9.34618 9.98975 10.39350 11.45283 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028367 B = 0.009113 C = 0.007533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.817987 B = 3071.652818 C = 3715.930198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.109 6.109 3 N -0.468 5.468 4 C -0.262 4.262 5 H 0.093 0.907 6 C 0.006 3.994 7 N -0.878 5.878 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.163 3.837 13 C -0.100 4.100 14 H 0.071 0.929 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.088 4.088 19 H 0.058 0.942 20 C -0.150 4.150 21 C -0.109 4.109 22 H 0.058 0.942 23 H -0.003 1.003 24 H 0.040 0.960 25 H 0.247 0.753 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.096 0.904 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 4.415 9.741 11.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.114 6.114 3 N -0.235 5.235 4 C -0.390 4.390 5 H 0.110 0.890 6 C -0.194 4.194 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.219 1.219 12 C 0.038 3.962 13 C -0.120 4.120 14 H 0.090 0.910 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.106 4.106 19 H 0.076 0.924 20 C -0.207 4.207 21 C -0.147 4.147 22 H 0.077 0.923 23 H 0.016 0.984 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.121 4.115 9.594 11.627 hybrid contribution -0.199 0.439 -0.936 1.053 sum 4.922 4.554 8.658 10.951 Atomic orbital electron populations 1.22789 0.88221 0.99645 0.96769 1.90740 1.15094 1.09656 1.95873 1.46025 1.64756 1.10747 1.01925 1.19426 1.36453 0.99838 0.83238 0.88952 1.24883 1.00746 0.96201 0.97546 1.70185 1.46234 1.11416 1.24353 0.86303 0.77889 0.78585 0.84533 1.20302 1.21589 1.21852 1.20908 0.93864 0.94467 0.86955 1.21737 0.97601 1.00028 0.92676 0.91044 1.21726 0.92341 0.99624 1.01504 1.21606 0.98238 1.00575 0.95421 1.21553 0.98211 0.99272 0.95881 1.21042 0.95767 0.95987 0.97848 0.92364 1.21937 1.00079 0.96165 1.02557 1.21602 0.95150 1.00424 0.97501 0.92314 0.98417 0.94127 0.94290 0.93697 0.94235 0.88551 0.93549 0.92121 0.93030 0.92569 0.93103 0.91371 0.93221 0.93592 0.92772 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.72 101.05 1.08 1.70 16 2 O -0.11 -2.98 9.35 -11.47 -0.11 -3.09 16 3 N -0.47 -12.02 3.04 -59.91 -0.18 -12.20 16 4 C -0.26 -7.08 7.72 -15.06 -0.12 -7.20 16 5 H 0.09 2.38 6.88 -52.49 -0.36 2.02 16 6 C 0.01 0.18 5.49 -17.43 -0.10 0.08 16 7 N -0.88 -26.14 10.62 55.49 0.59 -25.55 16 8 Si 0.90 21.78 29.55 -169.99 -5.02 16.76 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 C 0.16 3.38 5.56 -4.04 -0.02 3.36 16 13 C -0.10 -1.80 2.12 -90.62 -0.19 -1.99 16 14 H 0.07 1.43 6.43 -51.93 -0.33 1.09 16 15 C -0.11 -2.08 4.33 -26.73 -0.12 -2.20 16 16 C -0.12 -1.86 5.65 -26.73 -0.15 -2.01 16 17 C -0.11 -1.47 5.45 -26.74 -0.15 -1.62 16 18 C -0.09 -1.15 3.19 -90.62 -0.29 -1.44 16 19 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 20 C -0.15 -1.97 8.50 37.16 0.32 -1.65 16 21 C -0.11 -1.59 4.73 -26.73 -0.13 -1.71 16 22 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 24 H 0.04 1.05 7.90 -51.93 -0.41 0.64 16 25 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 28 H 0.10 2.11 5.65 -51.93 -0.29 1.81 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.01 4.81 -51.93 -0.25 0.76 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 289.58 15.07 4.36 4.36 Total: -1.00 -29.69 289.58 -6.83 -36.51 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.61 Total: -2.12 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 0.14 Total: -14.68 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.41 Total: -37.76 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: -0.11 Total: -3.09 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.69 -6.83 -36.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810136525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.293 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds