Wall clock time and date at job start Sun Mar 29 2020 22:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41600 * 113.99855 * 2 1 4 4 C 1.36936 * 120.00053 * 264.48491 * 3 2 1 5 5 H 1.07995 * 120.00100 * 180.02562 * 4 3 2 6 6 C 1.38817 * 119.99644 * 0.02562 * 4 3 2 7 7 N 1.31617 * 119.99996 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47139 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47079 * 119.99777 * 8 6 4 11 11 H 1.48503 * 109.46789 * 239.99892 * 8 6 4 12 12 C 1.46500 * 120.00030 * 84.48785 * 3 2 1 13 13 C 1.52995 * 109.47109 * 99.42898 * 12 3 2 14 14 H 1.09000 * 109.46969 * 305.37645 * 13 12 3 15 15 C 1.52995 * 109.47614 * 65.38305 * 13 12 3 16 16 C 1.53006 * 109.47110 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.46931 * 299.99914 * 16 15 13 18 18 C 1.52995 * 109.47154 * 60.00113 * 17 16 15 19 19 H 1.09000 * 109.46779 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47318 * 60.00023 * 18 17 16 21 21 C 1.52993 * 109.47270 * 299.99678 * 18 17 16 22 22 H 1.08997 * 109.47046 * 174.90603 * 1 2 3 23 23 H 1.09003 * 109.47040 * 294.90742 * 1 2 3 24 24 H 1.08999 * 109.47119 * 54.90294 * 1 2 3 25 25 H 0.97008 * 120.00046 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47468 * 339.41987 * 12 3 2 27 27 H 1.09005 * 109.46886 * 219.41997 * 12 3 2 28 28 H 1.09000 * 109.46779 * 300.00174 * 15 13 12 29 29 H 1.09003 * 109.47318 * 60.00160 * 15 13 12 30 30 H 1.08997 * 109.47169 * 60.00243 * 16 15 13 31 31 H 1.08998 * 109.46805 * 179.97438 * 16 15 13 32 32 H 1.09003 * 109.47297 * 299.99746 * 17 16 15 33 33 H 1.09004 * 109.46924 * 180.02562 * 17 16 15 34 34 H 1.09003 * 109.46899 * 300.00327 * 20 18 17 35 35 H 1.08996 * 109.47395 * 180.02562 * 20 18 17 36 36 H 1.08999 * 109.47174 * 59.99221 * 20 18 17 37 37 H 1.09005 * 109.47230 * 179.97438 * 21 18 17 38 38 H 1.08997 * 109.47169 * 299.99855 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3875 1.8727 -1.1804 5 1 2.8271 2.8592 -1.1804 6 6 2.2103 1.1918 -2.3770 7 7 1.6749 -0.0106 -2.3770 8 14 2.7328 1.9815 -3.9873 9 1 3.3033 3.3257 -3.7172 10 1 3.7572 1.1317 -4.6458 11 1 1.5528 2.1151 -4.8789 12 6 2.1915 2.0123 1.2629 13 6 3.6440 1.8688 1.7215 14 1 3.9057 0.8120 1.7741 15 6 4.5658 2.5735 0.7244 16 6 6.0185 2.4294 1.1829 17 6 6.1822 3.0641 2.5653 18 6 5.2604 2.3594 3.5625 19 1 5.3775 2.8113 4.5474 20 6 5.6273 0.8758 3.6358 21 6 3.8079 2.5035 3.1041 22 1 -0.3633 -1.0236 -0.0912 23 1 -0.3633 0.4328 0.9321 24 1 -0.3633 0.5909 -0.8408 25 1 1.5507 -0.4863 -3.2132 26 1 1.5282 1.5945 2.0202 27 1 1.9588 3.0674 1.1182 28 1 4.4494 2.1210 -0.2604 29 1 4.3042 3.6304 0.6719 30 1 6.2798 1.3725 1.2350 31 1 6.6752 2.9311 0.4722 32 1 5.9209 4.1211 2.5131 33 1 7.2172 2.9618 2.8917 34 1 5.5106 0.4236 2.6508 35 1 4.9703 0.3737 4.3458 36 1 6.6621 0.7731 3.9623 37 1 3.1512 2.0011 3.8143 38 1 3.5465 3.5604 3.0519 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810136525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:06 Heat of formation + Delta-G solvation = -12.430314 kcal Electronic energy + Delta-G solvation = -17087.106728 eV Core-core repulsion = 14544.998502 eV Total energy + Delta-G solvation = -2542.108226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13519 -37.80058 -34.78516 -33.78317 -32.25963 -30.92983 -27.52358 -27.25177 -26.99034 -23.87021 -23.02276 -21.57850 -19.61989 -19.13103 -17.11381 -16.60906 -16.21053 -15.77147 -15.41396 -15.25425 -14.90636 -14.53847 -14.25053 -13.96963 -13.56035 -13.21748 -12.98421 -12.90967 -12.79257 -12.47221 -12.28944 -12.21947 -11.89845 -11.87166 -11.67775 -11.56091 -11.04996 -10.84108 -10.69315 -10.57181 -10.24399 -8.89576 -7.74114 -5.19893 1.46828 1.47471 1.56968 2.26542 2.72487 3.42900 3.92709 3.98069 4.01971 4.32229 4.46681 4.57532 4.61222 4.62231 4.70532 4.74953 4.77123 4.85740 4.89770 4.94221 5.01182 5.10335 5.14407 5.20186 5.21002 5.26630 5.30207 5.46478 5.53756 5.55711 5.60505 5.63114 5.84056 5.87993 6.32438 7.23667 7.99899 8.31624 9.34038 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028367 B = 0.009113 C = 0.007533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.817987 B = 3071.652818 C = 3715.930198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.143 6.143 3 N -0.482 5.482 4 C -0.255 4.255 5 H 0.103 0.897 6 C -0.056 4.056 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.261 1.261 10 H -0.296 1.296 11 H -0.296 1.296 12 C 0.158 3.842 13 C -0.090 4.090 14 H 0.047 0.953 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.107 4.107 18 C -0.086 4.086 19 H 0.084 0.916 20 C -0.149 4.149 21 C -0.102 4.102 22 H 0.073 0.927 23 H 0.022 0.978 24 H 0.012 0.988 25 H 0.239 0.761 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 6.090 11.404 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.148 6.148 3 N -0.250 5.250 4 C -0.383 4.383 5 H 0.120 0.880 6 C -0.252 4.252 7 N -0.563 5.563 8 Si 0.789 3.211 9 H -0.185 1.185 10 H -0.223 1.223 11 H -0.223 1.223 12 C 0.035 3.965 13 C -0.110 4.110 14 H 0.065 0.935 15 C -0.148 4.148 16 C -0.155 4.155 17 C -0.144 4.144 18 C -0.104 4.104 19 H 0.102 0.898 20 C -0.207 4.207 21 C -0.140 4.140 22 H 0.091 0.909 23 H 0.041 0.959 24 H 0.031 0.969 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.162 5.817 11.293 14.119 hybrid contribution -0.516 -0.073 -1.370 1.466 sum 5.645 5.744 9.923 12.780 Atomic orbital electron populations 1.22710 0.86566 1.00271 0.96742 1.90627 1.16845 1.11271 1.96015 1.46309 1.65315 1.10144 1.03248 1.19783 1.34739 0.99854 0.83884 0.87970 1.25633 1.01871 0.96946 1.00743 1.70371 1.48488 1.12992 1.24411 0.85287 0.76981 0.78303 0.80485 1.18464 1.22307 1.22288 1.21195 0.95799 0.94264 0.85287 1.21550 0.95499 0.99015 0.94972 0.93500 1.21593 0.94574 0.99305 0.99374 1.21556 0.96135 1.00475 0.97378 1.21530 0.99463 0.99403 0.94010 1.21067 0.94354 0.95970 0.99010 0.89775 1.21916 1.01270 0.96251 1.01226 1.21551 0.96801 1.00689 0.94984 0.90887 0.95946 0.96882 0.95174 0.92840 0.93298 0.92884 0.92968 0.93097 0.92390 0.91653 0.91172 0.93910 0.92843 0.91993 0.91986 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.77 10.72 113.37 1.22 2.99 16 2 O -0.14 -7.99 9.35 -38.78 -0.36 -8.35 16 3 N -0.48 -25.00 3.04 -343.45 -1.04 -26.04 16 4 C -0.25 -13.89 7.72 84.03 0.65 -13.24 16 5 H 0.10 5.25 6.88 -2.91 -0.02 5.23 16 6 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 7 N -0.92 -56.14 10.62 21.65 0.23 -55.91 16 8 Si 0.96 45.64 29.55 68.60 2.03 47.67 16 9 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 11 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 12 C 0.16 6.42 5.56 86.38 0.48 6.90 16 13 C -0.09 -3.16 2.12 -10.80 -0.02 -3.18 16 14 H 0.05 1.89 6.43 -2.39 -0.02 1.87 16 15 C -0.11 -3.95 4.33 30.59 0.13 -3.82 16 16 C -0.12 -3.44 5.65 30.60 0.17 -3.27 16 17 C -0.11 -2.44 5.45 30.59 0.17 -2.28 16 18 C -0.09 -1.95 3.19 -10.80 -0.03 -1.98 16 19 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 20 C -0.15 -3.58 8.50 71.98 0.61 -2.97 16 21 C -0.10 -2.70 4.73 30.59 0.14 -2.55 16 22 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 23 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.01 0.67 7.90 -2.39 -0.02 0.65 16 25 H 0.24 14.30 8.31 -92.70 -0.77 13.53 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.05 1.90 8.11 -2.38 -0.02 1.88 16 28 H 0.05 2.35 5.65 -2.39 -0.01 2.33 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.58 6.43 -2.39 -0.02 1.56 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.24 4.81 -2.39 -0.01 1.23 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -64.63 289.58 5.84 -58.79 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.00 Total: 9.96 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 3.98 Total: -26.12 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -0.81 Total: -81.95 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.36 Total: -8.35 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -64.63 5.84 -58.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810136525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.362 kcal (2) G-P(sol) polarization free energy of solvation -64.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds