Wall clock time and date at job start Sun Mar 29 2020 22:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47301 * 2 1 4 4 O 1.42903 * 109.46965 * 120.00107 * 2 1 3 5 5 C 1.42897 * 114.00243 * 116.81674 * 4 2 1 6 6 C 1.52994 * 112.84850 * 65.22335 * 5 4 2 7 7 N 1.46898 * 109.47211 * 60.08957 * 6 5 4 8 8 C 1.46902 * 111.00332 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47587 * 179.97438 * 8 7 6 10 10 H 1.08008 * 119.99675 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00437 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99594 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00268 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46831 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47435 * 119.99732 * 13 11 9 16 16 H 1.48494 * 109.46947 * 240.00020 * 13 11 9 17 17 C 1.53776 * 113.61399 * 196.42417 * 5 4 2 18 18 C 1.53952 * 87.02222 * 89.23036 * 17 5 4 19 19 C 1.53774 * 87.11008 * 25.36042 * 18 17 5 20 20 H 1.09004 * 109.47026 * 56.10834 * 1 2 3 21 21 H 1.08995 * 109.47349 * 176.10438 * 1 2 3 22 22 H 1.09002 * 109.47247 * 296.11403 * 1 2 3 23 23 H 1.08997 * 109.47175 * 239.99611 * 2 1 3 24 24 H 1.08998 * 109.46935 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47042 * 299.99504 * 3 2 1 26 26 H 1.09002 * 109.46985 * 60.00030 * 3 2 1 27 27 H 1.08998 * 109.47601 * 300.08735 * 6 5 4 28 28 H 1.08998 * 109.47157 * 180.08584 * 6 5 4 29 29 H 1.00896 * 111.00403 * 56.04513 * 7 6 5 30 30 H 1.09000 * 109.47170 * 59.99189 * 8 7 6 31 31 H 1.09000 * 109.46496 * 300.00073 * 8 7 6 32 32 H 0.97000 * 119.99473 * 179.97438 * 12 11 9 33 33 H 1.09008 * 113.61093 * 203.74654 * 17 5 4 34 34 H 1.08996 * 113.61868 * 334.64687 * 17 5 4 35 35 H 1.08999 * 113.53298 * 270.81167 * 18 17 5 36 36 H 1.08997 * 113.74490 * 139.94579 * 18 17 5 37 37 H 1.08999 * 113.61451 * 220.09032 * 19 18 17 38 38 H 1.09001 * 113.61395 * 89.19398 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.7553 -1.8585 0.8889 6 6 4.0661 -1.5737 0.1531 7 7 4.9088 -0.6958 0.9759 8 6 6.1787 -0.3997 0.2993 9 6 7.0142 0.5017 1.1713 10 1 6.6392 0.8229 2.1318 11 6 8.2574 0.9164 0.7429 12 7 8.7142 0.5248 -0.4266 13 14 9.2934 2.0332 1.8240 14 1 8.5582 2.3266 3.0805 15 1 10.5764 1.3587 2.1467 16 1 9.5688 3.3025 1.1042 17 6 2.9206 -2.7826 2.1068 18 6 1.6033 -3.4529 1.6761 19 6 1.9199 -2.9792 0.2478 20 1 -0.3633 0.5731 -0.8531 21 1 -0.3634 -1.0252 -0.0698 22 1 -0.3634 0.4523 0.9228 23 1 1.8933 -0.5139 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 3.8507 -1.0846 -0.7969 28 1 4.5902 -2.5114 -0.0316 29 1 5.0694 -1.0986 1.8868 30 1 5.9776 0.0977 -0.6495 31 1 6.7175 -1.3291 0.1152 32 1 9.5887 0.8169 -0.7281 33 1 3.7871 -3.4407 2.0411 34 1 2.8547 -2.2620 3.0621 35 1 0.7167 -2.9855 2.1047 36 1 1.6057 -4.5371 1.7872 37 1 1.0472 -2.6169 -0.2956 38 1 2.5122 -3.6910 -0.3271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872247319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:01 Heat of formation + Delta-G solvation = -37.109057 kcal Electronic energy + Delta-G solvation = -16532.278349 eV Core-core repulsion = 13989.099973 eV Total energy + Delta-G solvation = -2543.178376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85188 -36.09770 -34.77089 -32.30460 -31.79691 -28.08599 -26.93026 -25.74953 -25.08083 -22.24947 -21.34149 -20.80129 -19.12974 -16.69166 -16.12594 -15.27696 -14.93802 -14.67801 -14.26842 -14.15639 -13.46195 -13.33717 -12.65486 -12.43119 -12.30644 -12.16913 -11.97985 -11.58034 -11.41992 -11.26117 -11.17434 -10.86499 -10.72731 -10.67979 -10.42669 -10.40061 -9.92205 -9.74679 -9.24992 -8.83952 -8.45716 -7.18751 -6.00867 -4.02174 3.32753 3.39905 3.45776 3.85908 4.44784 4.62797 4.75497 4.95397 5.02713 5.20908 5.33710 5.35247 5.46989 5.53939 5.62320 5.75652 5.80282 5.82307 5.88575 6.00113 6.02660 6.04785 6.14224 6.19449 6.27201 6.36583 6.43956 6.53134 6.78046 7.27479 7.44575 7.72279 7.83523 8.16515 8.46246 8.67535 9.08280 9.62845 11.10410 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031946 B = 0.006421 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.268157 B = 4359.590594 C = 4790.827949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.087 3.913 3 C -0.160 4.160 4 O -0.340 6.340 5 C 0.101 3.899 6 C 0.048 3.952 7 N -0.677 5.677 8 C 0.194 3.806 9 C -0.510 4.510 10 H 0.063 0.937 11 C 0.054 3.946 12 N -0.900 5.900 13 Si 0.898 3.102 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.126 4.126 18 C -0.133 4.133 19 C -0.168 4.168 20 H 0.061 0.939 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.025 0.975 29 H 0.329 0.671 30 H 0.025 0.975 31 H -0.017 1.017 32 H 0.260 0.740 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 -5.622 0.794 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 C -0.217 4.217 4 O -0.259 6.259 5 C 0.061 3.939 6 C -0.083 4.083 7 N -0.307 5.307 8 C 0.067 3.933 9 C -0.548 4.548 10 H 0.081 0.919 11 C -0.147 4.147 12 N -0.540 5.540 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.163 4.163 18 C -0.171 4.171 19 C -0.206 4.206 20 H 0.080 0.920 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.145 0.855 30 H 0.043 0.957 31 H 0.001 0.999 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.065 -4.942 0.639 15.867 hybrid contribution 1.209 -0.309 0.172 1.260 sum -13.855 -5.251 0.811 14.839 Atomic orbital electron populations 1.22185 0.96041 1.01601 1.02115 1.21897 0.92675 0.93689 0.88824 1.22047 1.03782 0.94859 1.01036 1.87922 1.70397 1.37679 1.29928 1.22542 0.90755 0.84450 0.96186 1.22311 0.93126 0.95543 0.97320 1.60527 1.19375 1.45658 1.05112 1.19558 0.83972 0.94825 0.94934 1.21237 1.00412 1.29112 1.04074 0.91871 1.24993 0.97787 0.96616 0.95267 1.69979 1.19003 1.45581 1.19388 0.86438 0.79972 0.80361 0.80632 1.19620 1.21136 1.21032 1.22974 0.97793 0.97033 0.98523 1.22762 0.98222 0.99779 0.96298 1.23605 1.00571 0.99256 0.97205 0.92026 0.92885 0.92082 0.92284 0.90227 0.92674 0.92480 0.91899 0.95653 0.85462 0.95654 0.99899 0.93042 0.89245 0.90362 0.90095 0.91774 0.91220 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.53 37.16 0.35 -1.53 16 2 C 0.09 1.26 2.41 -26.73 -0.06 1.19 16 3 C -0.16 -2.43 9.56 37.16 0.36 -2.08 16 4 O -0.34 -5.60 9.78 -35.23 -0.34 -5.95 16 5 C 0.10 1.55 0.70 -89.81 -0.06 1.48 16 6 C 0.05 0.87 4.89 -3.83 -0.02 0.85 16 7 N -0.68 -14.87 6.44 -115.06 -0.74 -15.61 16 8 C 0.19 5.17 5.44 -4.98 -0.03 5.14 16 9 C -0.51 -14.70 9.32 -34.44 -0.32 -15.02 16 10 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 11 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 13 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 C -0.13 -1.72 7.02 -25.83 -0.18 -1.90 16 18 C -0.13 -1.55 8.02 -25.83 -0.21 -1.76 16 19 C -0.17 -2.09 7.04 -25.92 -0.18 -2.27 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.57 7.19 -51.93 -0.37 0.20 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.85 6.35 -51.93 -0.33 0.52 16 24 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.18 7.02 -51.93 -0.36 0.82 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.33 7.05 8.29 -39.29 -0.33 6.72 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H -0.02 -0.47 8.14 -51.93 -0.42 -0.90 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.09 1.17 8.10 -51.92 -0.42 0.75 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.82 6.59 -51.93 -0.34 0.48 16 38 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -30.34 307.08 -7.97 -38.31 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.77 Total: 2.53 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.45 Total: -14.41 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.00 Total: -42.11 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.34 Total: -5.95 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.34 -7.97 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872247319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.200 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds