Wall clock time and date at job start Sun Mar 29 2020 22:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47301 * 2 1 4 4 O 1.42903 * 109.46965 * 120.00107 * 2 1 3 5 5 C 1.42897 * 114.00243 * 116.81674 * 4 2 1 6 6 C 1.52994 * 112.84850 * 65.22335 * 5 4 2 7 7 N 1.46898 * 109.47211 * 60.08957 * 6 5 4 8 8 C 1.46902 * 111.00332 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47587 * 179.97438 * 8 7 6 10 10 H 1.08008 * 119.99675 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00437 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99594 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00268 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46831 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47435 * 119.99732 * 13 11 9 16 16 H 1.48494 * 109.46947 * 240.00020 * 13 11 9 17 17 C 1.53776 * 113.61399 * 196.42417 * 5 4 2 18 18 C 1.53952 * 87.02222 * 89.23036 * 17 5 4 19 19 C 1.53774 * 87.11008 * 25.36042 * 18 17 5 20 20 H 1.09004 * 109.47026 * 56.10834 * 1 2 3 21 21 H 1.08995 * 109.47349 * 176.10438 * 1 2 3 22 22 H 1.09002 * 109.47247 * 296.11403 * 1 2 3 23 23 H 1.08997 * 109.47175 * 239.99611 * 2 1 3 24 24 H 1.08998 * 109.46935 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47042 * 299.99504 * 3 2 1 26 26 H 1.09002 * 109.46985 * 60.00030 * 3 2 1 27 27 H 1.08998 * 109.47601 * 300.08735 * 6 5 4 28 28 H 1.08998 * 109.47157 * 180.08584 * 6 5 4 29 29 H 1.00896 * 111.00403 * 56.04513 * 7 6 5 30 30 H 1.09000 * 109.47170 * 59.99189 * 8 7 6 31 31 H 1.09000 * 109.46496 * 300.00073 * 8 7 6 32 32 H 0.97000 * 119.99473 * 179.97438 * 12 11 9 33 33 H 1.09008 * 113.61093 * 203.74654 * 17 5 4 34 34 H 1.08996 * 113.61868 * 334.64687 * 17 5 4 35 35 H 1.08999 * 113.53298 * 270.81167 * 18 17 5 36 36 H 1.08997 * 113.74490 * 139.94579 * 18 17 5 37 37 H 1.08999 * 113.61451 * 220.09032 * 19 18 17 38 38 H 1.09001 * 113.61395 * 89.19398 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.7553 -1.8585 0.8889 6 6 4.0661 -1.5737 0.1531 7 7 4.9088 -0.6958 0.9759 8 6 6.1787 -0.3997 0.2993 9 6 7.0142 0.5017 1.1713 10 1 6.6392 0.8229 2.1318 11 6 8.2574 0.9164 0.7429 12 7 8.7142 0.5248 -0.4266 13 14 9.2934 2.0332 1.8240 14 1 8.5582 2.3266 3.0805 15 1 10.5764 1.3587 2.1467 16 1 9.5688 3.3025 1.1042 17 6 2.9206 -2.7826 2.1068 18 6 1.6033 -3.4529 1.6761 19 6 1.9199 -2.9792 0.2478 20 1 -0.3633 0.5731 -0.8531 21 1 -0.3634 -1.0252 -0.0698 22 1 -0.3634 0.4523 0.9228 23 1 1.8933 -0.5139 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 3.8507 -1.0846 -0.7969 28 1 4.5902 -2.5114 -0.0316 29 1 5.0694 -1.0986 1.8868 30 1 5.9776 0.0977 -0.6495 31 1 6.7175 -1.3291 0.1152 32 1 9.5887 0.8169 -0.7281 33 1 3.7871 -3.4407 2.0411 34 1 2.8547 -2.2620 3.0621 35 1 0.7167 -2.9855 2.1047 36 1 1.6057 -4.5371 1.7872 37 1 1.0472 -2.6169 -0.2956 38 1 2.5122 -3.6910 -0.3271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872247319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:01 Heat of formation + Delta-G solvation = -57.152055 kcal Electronic energy + Delta-G solvation = -16533.147478 eV Core-core repulsion = 13989.099973 eV Total energy + Delta-G solvation = -2544.047506 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.02555 -37.26472 -36.61702 -34.40720 -32.95671 -29.92271 -28.02021 -27.15486 -26.52713 -23.83793 -23.06272 -21.99358 -20.27838 -18.69176 -17.48942 -16.85275 -16.34848 -16.16140 -15.87558 -15.45468 -14.92433 -14.60767 -14.41804 -13.97865 -13.51147 -13.33027 -13.18515 -13.12462 -13.04494 -12.74792 -12.65109 -12.51821 -12.27360 -12.08019 -11.83252 -11.55574 -11.50412 -11.29980 -10.90316 -10.68572 -10.15984 -9.06049 -8.24284 -6.35275 1.39438 1.40296 1.54587 2.38741 2.70946 3.08881 3.39842 3.66994 3.86515 3.91824 4.01395 4.09286 4.26747 4.37282 4.44553 4.58173 4.68254 4.78192 4.80228 4.81236 4.94659 4.99246 5.01316 5.05282 5.09719 5.11701 5.23257 5.30872 5.38802 5.44934 5.50247 5.60565 6.00910 6.44915 6.51786 6.74251 6.89486 7.35907 8.87640 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031946 B = 0.006421 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.268157 B = 4359.590594 C = 4790.827949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 C -0.156 4.156 4 O -0.358 6.358 5 C 0.092 3.908 6 C 0.048 3.952 7 N -0.675 5.675 8 C 0.211 3.789 9 C -0.533 4.533 10 H 0.062 0.938 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.973 3.027 14 H -0.264 1.264 15 H -0.275 1.275 16 H -0.277 1.277 17 C -0.130 4.130 18 C -0.117 4.117 19 C -0.158 4.158 20 H 0.079 0.921 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.037 0.963 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.333 0.667 30 H -0.004 1.004 31 H -0.042 1.042 32 H 0.265 0.735 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.102 -5.949 1.513 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.024 3.976 3 C -0.214 4.214 4 O -0.278 6.278 5 C 0.052 3.948 6 C -0.082 4.082 7 N -0.305 5.305 8 C 0.083 3.917 9 C -0.571 4.571 10 H 0.080 0.920 11 C -0.197 4.197 12 N -0.575 5.575 13 Si 0.797 3.203 14 H -0.188 1.188 15 H -0.201 1.201 16 H -0.203 1.203 17 C -0.168 4.168 18 C -0.155 4.155 19 C -0.196 4.196 20 H 0.098 0.902 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.150 0.850 30 H 0.014 0.986 31 H -0.024 1.024 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.306 -5.281 1.362 17.193 hybrid contribution 1.580 -0.205 -0.101 1.596 sum -14.726 -5.485 1.261 15.765 Atomic orbital electron populations 1.22101 0.93264 1.02736 1.02883 1.22053 0.94758 0.92648 0.88182 1.22015 1.00963 0.96250 1.02161 1.87902 1.70399 1.38392 1.31066 1.22664 0.89529 0.85122 0.97534 1.22412 0.94300 0.94586 0.96864 1.60398 1.17256 1.47415 1.05416 1.19186 0.85585 0.93108 0.93809 1.21549 1.01310 1.29889 1.04340 0.92026 1.25953 0.99048 0.98015 0.96665 1.70099 1.19659 1.46653 1.21108 0.85276 0.78108 0.78137 0.78732 1.18816 1.20072 1.20307 1.23049 0.99488 0.96883 0.97366 1.22693 0.96834 1.00998 0.94942 1.23570 1.00258 0.97723 0.98023 0.90199 0.91721 0.92204 0.92610 0.94401 0.90450 0.92478 0.93039 0.95372 0.85034 0.98629 1.02395 0.92594 0.88941 0.91175 0.89722 0.89527 0.90175 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.53 71.98 0.69 -2.49 16 2 C 0.08 2.28 2.41 30.60 0.07 2.35 16 3 C -0.16 -4.78 9.56 71.98 0.69 -4.10 16 4 O -0.36 -11.57 9.78 -148.98 -1.46 -13.03 16 5 C 0.09 2.74 0.70 -10.27 -0.01 2.73 16 6 C 0.05 1.80 4.89 86.30 0.42 2.23 16 7 N -0.67 -30.66 6.44 -517.95 -3.34 -34.00 16 8 C 0.21 11.75 5.44 85.56 0.47 12.22 16 9 C -0.53 -31.43 9.32 25.60 0.24 -31.19 16 10 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 11 C 0.00 0.07 5.46 84.65 0.46 0.53 16 12 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 13 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 14 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 17 C -0.13 -3.39 7.02 31.18 0.22 -3.18 16 18 C -0.12 -2.39 8.02 31.18 0.25 -2.14 16 19 C -0.16 -3.55 7.04 31.12 0.22 -3.34 16 20 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.06 1.20 7.19 -2.39 -0.02 1.18 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.06 1.58 6.35 -2.39 -0.02 1.57 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 2.01 7.02 -2.39 -0.02 1.99 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.33 14.61 8.29 -89.70 -0.74 13.87 16 30 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H -0.04 -2.47 8.14 -2.39 -0.02 -2.49 16 32 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.09 2.32 8.10 -2.38 -0.02 2.30 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.66 6.59 -2.39 -0.02 1.64 16 38 H 0.09 1.97 8.10 -2.39 -0.02 1.95 16 Total: -1.00 -66.11 307.08 1.50 -64.60 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.27 Total: 18.73 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 3.72 Total: -26.37 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -3.05 Total: -91.27 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -1.46 Total: -13.03 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -66.11 1.50 -64.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872247319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.452 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds