Wall clock time and date at job start Sun Mar 29 2020 21:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 N 1.46906 * 109.46907 * 119.99696 * 2 1 3 5 5 C 1.46898 * 110.99888 * 300.00051 * 4 2 1 6 6 C 1.50704 * 109.47041 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00078 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00042 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99811 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99787 * 180.02562 * 8 6 5 11 11 H 1.48489 * 109.47028 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47119 * 120.00342 * 10 8 6 13 13 H 1.48502 * 109.46590 * 240.00179 * 10 8 6 14 14 C 1.52993 * 109.47024 * 239.99817 * 2 1 3 15 15 H 1.09007 * 109.47571 * 179.97438 * 14 2 1 16 16 C 1.53094 * 109.48152 * 299.99926 * 14 2 1 17 17 C 1.53179 * 109.16495 * 177.59722 * 16 14 2 18 18 C 1.53180 * 109.03371 * 303.01993 * 17 16 14 19 19 C 1.53089 * 109.16637 * 56.97899 * 18 17 16 20 20 O 1.42894 * 109.48459 * 59.94313 * 14 2 1 21 21 H 1.09001 * 109.47375 * 300.00092 * 1 2 3 22 22 H 1.09002 * 109.47045 * 60.00167 * 1 2 3 23 23 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47006 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47097 * 299.99801 * 3 2 1 26 26 H 1.09001 * 109.47142 * 59.99766 * 3 2 1 27 27 H 1.00904 * 110.99860 * 176.04955 * 4 2 1 28 28 H 1.08997 * 109.47334 * 299.99788 * 5 4 2 29 29 H 1.08995 * 109.47296 * 60.00089 * 5 4 2 30 30 H 0.97002 * 119.99396 * 180.02562 * 9 8 6 31 31 H 1.09007 * 109.52314 * 297.49761 * 16 14 2 32 32 H 1.08990 * 109.52308 * 57.68763 * 16 14 2 33 33 H 1.09001 * 109.54359 * 62.87928 * 17 16 14 34 34 H 1.08994 * 109.54530 * 183.15118 * 17 16 14 35 35 H 1.08997 * 109.52592 * 176.88486 * 18 17 16 36 36 H 1.09001 * 109.52236 * 297.01580 * 18 17 16 37 37 H 1.09007 * 109.48091 * 62.37141 * 19 18 17 38 38 H 1.08999 * 109.48595 * 182.40004 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5485 -0.0263 2.4211 6 6 2.0691 -0.7636 3.6280 7 1 2.6883 -1.6392 3.5003 8 6 1.7557 -0.3196 4.8952 9 7 1.0021 0.7469 5.0506 10 14 2.4016 -1.2332 6.3911 11 1 3.2201 -2.3906 5.9490 12 1 3.2395 -0.3176 7.2066 13 1 1.2590 -1.7171 7.2069 14 6 2.0399 -0.7213 -1.2492 15 1 3.1300 -0.7209 -1.2495 16 6 1.5297 -2.1647 -1.2493 17 6 1.9942 -2.8620 -2.5317 18 6 1.4927 -2.0680 -3.7418 19 6 2.0042 -0.6284 -3.6454 20 8 1.5627 -0.0487 -2.4161 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.0262 -0.7625 1.1911 28 1 1.9120 1.0012 2.4379 29 1 0.4587 -0.0264 2.4379 30 1 0.7820 1.0594 5.9421 31 1 1.9288 -2.6922 -0.3829 32 1 0.4406 -2.1661 -1.2079 33 1 3.0832 -2.9048 -2.5496 34 1 1.5876 -3.8728 -2.5648 35 1 1.8651 -2.5263 -4.6580 36 1 0.4027 -2.0683 -3.7514 37 1 3.0938 -0.6268 -3.6772 38 1 1.6153 -0.0475 -4.4818 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879409187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:23 Heat of formation + Delta-G solvation = -82.322008 kcal Electronic energy + Delta-G solvation = -16757.380331 eV Core-core repulsion = 14212.241374 eV Total energy + Delta-G solvation = -2545.138957 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.81295 -38.19717 -35.00783 -34.48322 -32.49980 -30.59427 -28.42133 -28.03124 -26.07514 -24.50412 -23.60474 -21.10069 -20.02533 -18.70828 -17.16790 -17.09201 -16.47873 -15.99766 -15.60158 -15.32397 -15.19249 -14.85614 -14.40944 -14.09822 -13.75962 -13.50980 -13.30737 -12.93020 -12.88349 -12.62632 -12.54858 -12.34113 -12.29367 -11.94173 -11.80947 -11.65979 -11.28131 -11.21243 -10.96589 -10.62752 -10.25783 -9.03232 -8.19569 -6.29380 1.41678 1.42313 1.55918 2.40691 2.76915 3.14154 3.64253 3.85263 3.94398 4.03934 4.08178 4.17701 4.26689 4.41465 4.46809 4.64957 4.74153 4.76323 4.89126 4.92738 4.97748 5.00202 5.06326 5.11342 5.13710 5.23343 5.33134 5.35860 5.40627 5.47566 5.54289 5.66337 6.07902 6.39805 6.50814 6.76759 6.94474 7.40934 8.92121 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046236 B = 0.006136 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.438595 B = 4562.126620 C = 4889.575892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.113 3.887 3 C -0.167 4.167 4 N -0.670 5.670 5 C 0.210 3.790 6 C -0.532 4.532 7 H 0.063 0.937 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.971 3.029 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.118 3.882 15 H 0.053 0.947 16 C -0.140 4.140 17 C -0.121 4.121 18 C -0.151 4.151 19 C 0.054 3.946 20 O -0.393 6.393 21 H 0.031 0.969 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.331 0.669 28 H -0.032 1.032 29 H 0.006 0.994 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 -4.544 -16.886 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.022 3.978 3 C -0.226 4.226 4 N -0.301 5.301 5 C 0.083 3.917 6 C -0.570 4.570 7 H 0.082 0.918 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.795 3.205 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.206 1.206 14 C 0.060 3.940 15 H 0.071 0.929 16 C -0.178 4.178 17 C -0.159 4.159 18 C -0.188 4.188 19 C -0.022 4.022 20 O -0.312 6.312 21 H 0.050 0.950 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.148 0.852 28 H -0.014 1.014 29 H 0.024 0.976 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.976 -4.747 -16.765 17.536 hybrid contribution 0.740 0.560 1.167 1.491 sum 2.715 -4.187 -15.598 16.377 Atomic orbital electron populations 1.21744 0.94276 1.01654 1.00560 1.20847 0.95819 0.91352 0.89825 1.22372 1.00596 0.98234 1.01399 1.60664 1.15173 1.53195 1.01048 1.19227 0.94690 0.91209 0.86608 1.21615 1.31489 1.12439 0.91487 0.91846 1.25908 0.95420 0.95928 1.02417 1.70105 1.38638 1.25329 1.23466 0.85317 0.78107 0.78589 0.78460 1.18645 1.20472 1.20563 1.21739 0.96407 0.91580 0.84257 0.92880 1.22079 1.01410 0.95388 0.98877 1.21629 1.01048 0.99370 0.93804 1.22163 1.01601 0.95994 0.99077 1.22773 0.98908 0.94346 0.86199 1.87860 1.74524 1.54830 1.13979 0.94980 0.91256 0.92365 0.92957 0.91059 0.94588 0.85155 1.01412 0.97587 0.92771 0.91043 0.92090 0.91517 0.90831 0.88958 0.91711 0.92779 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.67 7.74 71.98 0.56 -4.11 16 2 C 0.11 4.13 0.49 3.52 0.00 4.13 16 3 C -0.17 -6.09 8.09 71.98 0.58 -5.50 16 4 N -0.67 -28.69 5.36 -474.16 -2.54 -31.23 16 5 C 0.21 11.24 4.65 85.56 0.40 11.64 16 6 C -0.53 -30.43 9.32 25.60 0.24 -30.19 16 7 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 8 C 0.00 0.07 5.46 84.65 0.46 0.53 16 9 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 10 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 14 C 0.12 3.54 2.03 30.62 0.06 3.60 16 15 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 16 C -0.14 -3.91 4.93 30.69 0.15 -3.76 16 17 C -0.12 -2.52 6.03 30.71 0.19 -2.34 16 18 C -0.15 -2.70 6.14 30.68 0.19 -2.51 16 19 C 0.05 1.07 6.84 72.01 0.49 1.57 16 20 O -0.39 -10.98 9.06 -148.98 -1.35 -12.33 16 21 H 0.03 1.35 6.40 -2.39 -0.02 1.33 16 22 H 0.07 2.33 7.68 -2.39 -0.02 2.31 16 23 H 0.06 2.14 6.38 -2.39 -0.02 2.13 16 24 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.07 2.36 7.68 -2.39 -0.02 2.34 16 26 H 0.04 1.50 6.40 -2.39 -0.02 1.48 16 27 H 0.33 13.58 8.71 -89.69 -0.78 12.79 16 28 H -0.03 -1.83 6.30 -2.39 -0.02 -1.84 16 29 H 0.01 0.36 6.30 -2.39 -0.02 0.34 16 30 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.07 2.22 7.69 -2.38 -0.02 2.21 16 32 H 0.06 1.83 6.31 -2.39 -0.02 1.81 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 0.98 8.14 -2.38 -0.02 0.97 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -63.37 291.41 1.98 -61.39 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.24 Total: 19.20 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 3.32 Total: -26.95 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -2.26 Total: -88.00 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -1.35 Total: -12.33 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.37 1.98 -61.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879409187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.935 kcal (2) G-P(sol) polarization free energy of solvation -63.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds