Wall clock time and date at job start Sun Mar 29 2020 22:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.57485 * 2 1 4 4 C 1.50473 * 109.57375 * 120.37793 * 2 1 3 5 5 C 1.54290 * 113.03003 * 211.96783 * 4 2 1 6 6 C 1.54069 * 112.29165 * 318.29673 * 5 4 2 7 7 N 1.44275 * 111.98210 * 318.92061 * 6 5 4 8 8 C 1.46895 * 110.99984 * 219.30515 * 7 6 5 9 9 C 1.52997 * 109.47122 * 306.80893 * 8 7 6 10 10 H 1.09008 * 109.47208 * 53.87426 * 9 8 7 11 11 O 1.42901 * 109.47415 * 293.87253 * 9 8 7 12 12 C 1.50709 * 109.47079 * 173.87380 * 9 8 7 13 13 H 1.07994 * 119.99517 * 359.97438 * 12 9 8 14 14 C 1.37872 * 120.00027 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00167 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 120.00080 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47239 * 89.99942 * 16 14 12 18 18 H 1.48501 * 109.47187 * 209.99548 * 16 14 12 19 19 H 1.48497 * 109.47193 * 329.99798 * 16 14 12 20 20 C 1.47805 * 109.46089 * 96.43320 * 7 6 5 21 21 C 1.45864 * 112.91541 * 276.74189 * 20 7 6 22 22 H 1.09006 * 109.47221 * 180.25511 * 1 2 3 23 23 H 1.09007 * 109.47296 * 300.25265 * 1 2 3 24 24 H 1.08996 * 109.47292 * 60.25333 * 1 2 3 25 25 H 1.09002 * 108.76652 * 332.87932 * 4 2 1 26 26 H 1.08999 * 108.76934 * 91.04641 * 4 2 1 27 27 H 1.09000 * 108.92147 * 79.02592 * 5 4 2 28 28 H 1.09004 * 108.91266 * 197.66802 * 5 4 2 29 29 H 1.08999 * 108.98147 * 198.27374 * 6 5 4 30 30 H 1.09003 * 108.97683 * 79.56348 * 6 5 4 31 31 H 1.09002 * 109.47005 * 66.80606 * 8 7 6 32 32 H 1.09003 * 109.46983 * 186.80951 * 8 7 6 33 33 H 0.96696 * 114.00060 * 300.00598 * 11 9 8 34 34 H 0.97000 * 120.00305 * 179.97438 * 15 14 12 35 35 H 1.09001 * 108.79323 * 37.62496 * 20 7 6 36 36 H 1.08999 * 108.78961 * 155.97021 * 20 7 6 37 37 H 1.09008 * 109.05284 * 181.87395 * 21 20 7 38 38 H 1.09000 * 109.05774 * 300.85088 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0341 -0.7170 1.2231 5 6 3.3713 -0.1519 1.7458 6 6 4.3556 0.1698 0.6050 7 7 4.3449 -0.8456 -0.4199 8 6 5.7024 -1.1059 -0.9172 9 6 6.3481 0.2116 -1.3507 10 1 6.2989 0.9277 -0.5302 11 8 5.6496 0.7349 -2.4822 12 6 7.7891 -0.0323 -1.7187 13 1 8.2029 -1.0275 -1.6498 14 6 8.5792 1.0151 -2.1423 15 7 8.0754 2.2271 -2.2257 16 14 10.3650 0.7126 -2.5991 17 1 10.4575 0.3842 -4.0444 18 1 11.1618 1.9336 -2.3171 19 1 10.8956 -0.4204 -1.7991 20 6 3.4495 -0.4268 -1.5188 21 6 2.0477 -0.7335 -1.2574 22 1 -0.3634 -1.0277 0.0046 23 1 -0.3634 0.5178 0.8878 24 1 -0.3634 0.5099 -0.8922 25 1 1.2861 -0.6338 2.0116 26 1 2.1693 -1.7711 0.9809 27 1 3.1735 0.7597 2.3096 28 1 3.8293 -0.8852 2.4097 29 1 5.3619 0.2477 1.0164 30 1 4.0814 1.1261 0.1594 31 1 6.2986 -1.5595 -0.1253 32 1 5.6534 -1.7841 -1.7691 33 1 5.6523 0.1491 -3.2515 34 1 8.6314 2.9641 -2.5233 35 1 3.5524 0.6485 -1.6651 36 1 3.7541 -0.9358 -2.4332 37 1 1.4506 -0.4300 -2.1175 38 1 1.9398 -1.8082 -1.1110 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929362894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:46 Heat of formation + Delta-G solvation = -63.838362 kcal Electronic energy + Delta-G solvation = -16944.524451 eV Core-core repulsion = 14400.187005 eV Total energy + Delta-G solvation = -2544.337446 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.16270 -36.22494 -33.91517 -32.23091 -31.95482 -29.54431 -27.32198 -25.62829 -23.78246 -22.93853 -21.22138 -19.67419 -18.72870 -17.04199 -15.40117 -15.06185 -14.65356 -14.39549 -14.33385 -14.07945 -13.58446 -13.11761 -12.84030 -12.75032 -12.39298 -11.95619 -11.50468 -11.27964 -11.10022 -10.93284 -10.85385 -10.64982 -10.27759 -10.24773 -10.19600 -10.10025 -9.90711 -9.71273 -9.34699 -8.58839 -8.53479 -7.18959 -6.00841 -4.20154 3.26326 3.33606 3.36456 4.37331 4.62521 4.97035 5.14092 5.22865 5.25107 5.54753 5.58803 5.67198 5.78820 5.84739 5.95978 5.99490 6.06586 6.09193 6.16375 6.26863 6.33161 6.44298 6.50758 6.55808 6.61087 6.64779 6.67205 6.73643 6.88781 6.92321 7.57440 7.73541 7.86155 7.93995 8.21274 8.83104 9.34570 9.56517 11.02054 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053382 B = 0.006433 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.394108 B = 4351.679631 C = 4489.358003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.100 4.100 5 C -0.109 4.109 6 C 0.056 3.944 7 N -0.528 5.528 8 C 0.027 3.973 9 C 0.197 3.803 10 H 0.058 0.942 11 O -0.563 6.563 12 C -0.572 4.572 13 H 0.056 0.944 14 C 0.079 3.921 15 N -0.861 5.861 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.058 3.942 21 C -0.106 4.106 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.342 0.658 34 H 0.260 0.740 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 -4.696 4.046 12.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.085 0.915 4 C -0.138 4.138 5 C -0.147 4.147 6 C -0.074 4.074 7 N -0.251 5.251 8 C -0.100 4.100 9 C 0.138 3.862 10 H 0.076 0.924 11 O -0.366 6.366 12 C -0.610 4.610 13 H 0.074 0.926 14 C -0.127 4.127 15 N -0.497 5.497 16 Si 0.715 3.285 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.070 4.070 21 C -0.144 4.144 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.186 0.814 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.569 -4.452 4.641 13.237 hybrid contribution 1.625 0.175 -0.963 1.897 sum -9.944 -4.277 3.678 11.433 Atomic orbital electron populations 1.21876 0.95918 1.01224 1.01055 1.20917 0.94418 0.99973 0.95576 0.91496 1.21220 0.95741 1.00588 0.96224 1.21962 0.95381 0.99848 0.97520 1.21833 0.98689 0.93573 0.93286 1.61878 1.10118 1.42557 1.10538 1.23109 0.87518 0.99970 0.99430 1.20077 0.89839 0.89855 0.86387 0.92415 1.86574 1.77109 1.49177 1.23750 1.21661 0.96537 0.94788 1.48057 0.92617 1.25048 0.98104 0.95031 0.94502 1.70077 1.35694 0.99513 1.44385 0.86686 0.85109 0.77776 0.78887 1.20559 1.21163 1.19814 1.20938 0.92045 1.00446 0.93546 1.20710 0.96500 1.00322 0.96872 0.93037 0.93196 0.93067 0.93599 0.91843 0.92953 0.92581 0.91850 0.94095 0.91356 0.92074 0.81413 0.93057 0.92811 0.92339 0.92503 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.90 37.16 0.33 -1.25 16 2 C -0.09 -1.21 2.39 -91.10 -0.22 -1.42 16 3 H 0.07 0.99 7.17 -51.93 -0.37 0.62 16 4 C -0.10 -1.34 4.98 -27.32 -0.14 -1.48 16 5 C -0.11 -1.59 6.15 -25.50 -0.16 -1.75 16 6 C 0.06 1.00 3.89 -4.67 -0.02 0.98 16 7 N -0.53 -9.63 4.45 -239.55 -1.07 -10.70 16 8 C 0.03 0.56 4.88 -3.83 -0.02 0.55 16 9 C 0.20 4.87 2.53 -27.88 -0.07 4.80 16 10 H 0.06 1.59 6.31 -51.92 -0.33 1.26 16 11 O -0.56 -14.01 9.99 -35.23 -0.35 -14.36 16 12 C -0.57 -15.61 8.76 -34.44 -0.30 -15.91 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.08 2.21 5.40 -17.82 -0.10 2.12 16 15 N -0.86 -25.48 12.84 55.43 0.71 -24.77 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 20 C 0.06 0.99 3.54 -6.70 -0.02 0.97 16 21 C -0.11 -1.51 4.92 -29.32 -0.14 -1.66 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.51 8.10 -51.93 -0.42 0.09 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.55 7.69 -51.93 -0.40 0.15 16 26 H 0.06 0.90 7.38 -51.93 -0.38 0.52 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.23 6.68 -51.93 -0.35 0.88 16 30 H 0.04 0.80 6.51 -51.93 -0.34 0.46 16 31 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.06 1.23 7.82 -51.93 -0.41 0.82 16 33 H 0.34 7.72 8.90 45.56 0.41 8.12 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.05 1.06 6.12 -51.93 -0.32 0.74 16 36 H 0.06 1.01 7.29 -51.93 -0.38 0.64 16 37 H 0.06 0.74 8.02 -51.92 -0.42 0.33 16 38 H 0.06 0.84 7.58 -51.93 -0.39 0.45 16 LS Contribution 286.78 15.07 4.32 4.32 Total: -1.00 -28.99 286.78 -8.01 -37.00 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.75 Total: 6.38 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.85 Total: -14.05 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.35 Total: -35.47 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.35 Total: -14.36 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.99 -8.01 -37.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929362894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.837 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds