Wall clock time and date at job start Sun Mar 29 2020 22:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.57485 * 2 1 4 4 C 1.50473 * 109.57375 * 120.37793 * 2 1 3 5 5 C 1.54290 * 113.03003 * 211.96783 * 4 2 1 6 6 C 1.54069 * 112.29165 * 318.29673 * 5 4 2 7 7 N 1.44275 * 111.98210 * 318.92061 * 6 5 4 8 8 C 1.46895 * 110.99984 * 219.30515 * 7 6 5 9 9 C 1.52997 * 109.47122 * 306.80893 * 8 7 6 10 10 H 1.09008 * 109.47208 * 53.87426 * 9 8 7 11 11 O 1.42901 * 109.47415 * 293.87253 * 9 8 7 12 12 C 1.50709 * 109.47079 * 173.87380 * 9 8 7 13 13 H 1.07994 * 119.99517 * 359.97438 * 12 9 8 14 14 C 1.37872 * 120.00027 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00167 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 120.00080 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47239 * 89.99942 * 16 14 12 18 18 H 1.48501 * 109.47187 * 209.99548 * 16 14 12 19 19 H 1.48497 * 109.47193 * 329.99798 * 16 14 12 20 20 C 1.47805 * 109.46089 * 96.43320 * 7 6 5 21 21 C 1.45864 * 112.91541 * 276.74189 * 20 7 6 22 22 H 1.09006 * 109.47221 * 180.25511 * 1 2 3 23 23 H 1.09007 * 109.47296 * 300.25265 * 1 2 3 24 24 H 1.08996 * 109.47292 * 60.25333 * 1 2 3 25 25 H 1.09002 * 108.76652 * 332.87932 * 4 2 1 26 26 H 1.08999 * 108.76934 * 91.04641 * 4 2 1 27 27 H 1.09000 * 108.92147 * 79.02592 * 5 4 2 28 28 H 1.09004 * 108.91266 * 197.66802 * 5 4 2 29 29 H 1.08999 * 108.98147 * 198.27374 * 6 5 4 30 30 H 1.09003 * 108.97683 * 79.56348 * 6 5 4 31 31 H 1.09002 * 109.47005 * 66.80606 * 8 7 6 32 32 H 1.09003 * 109.46983 * 186.80951 * 8 7 6 33 33 H 0.96696 * 114.00060 * 300.00598 * 11 9 8 34 34 H 0.97000 * 120.00305 * 179.97438 * 15 14 12 35 35 H 1.09001 * 108.79323 * 37.62496 * 20 7 6 36 36 H 1.08999 * 108.78961 * 155.97021 * 20 7 6 37 37 H 1.09008 * 109.05284 * 181.87395 * 21 20 7 38 38 H 1.09000 * 109.05774 * 300.85088 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0341 -0.7170 1.2231 5 6 3.3713 -0.1519 1.7458 6 6 4.3556 0.1698 0.6050 7 7 4.3449 -0.8456 -0.4199 8 6 5.7024 -1.1059 -0.9172 9 6 6.3481 0.2116 -1.3507 10 1 6.2989 0.9277 -0.5302 11 8 5.6496 0.7349 -2.4822 12 6 7.7891 -0.0323 -1.7187 13 1 8.2029 -1.0275 -1.6498 14 6 8.5792 1.0151 -2.1423 15 7 8.0754 2.2271 -2.2257 16 14 10.3650 0.7126 -2.5991 17 1 10.4575 0.3842 -4.0444 18 1 11.1618 1.9336 -2.3171 19 1 10.8956 -0.4204 -1.7991 20 6 3.4495 -0.4268 -1.5188 21 6 2.0477 -0.7335 -1.2574 22 1 -0.3634 -1.0277 0.0046 23 1 -0.3634 0.5178 0.8878 24 1 -0.3634 0.5099 -0.8922 25 1 1.2861 -0.6338 2.0116 26 1 2.1693 -1.7711 0.9809 27 1 3.1735 0.7597 2.3096 28 1 3.8293 -0.8852 2.4097 29 1 5.3619 0.2477 1.0164 30 1 4.0814 1.1261 0.1594 31 1 6.2986 -1.5595 -0.1253 32 1 5.6534 -1.7841 -1.7691 33 1 5.6523 0.1491 -3.2515 34 1 8.6314 2.9641 -2.5233 35 1 3.5524 0.6485 -1.6651 36 1 3.7541 -0.9358 -2.4332 37 1 1.4506 -0.4300 -2.1175 38 1 1.9398 -1.8082 -1.1110 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929362894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:45 Heat of formation + Delta-G solvation = -83.825061 kcal Electronic energy + Delta-G solvation = -16945.391139 eV Core-core repulsion = 14400.187005 eV Total energy + Delta-G solvation = -2545.204134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59838 -37.86088 -35.49829 -34.27565 -33.31770 -31.07451 -28.91077 -27.12722 -25.51142 -24.12245 -22.97285 -20.98187 -20.09867 -19.11319 -16.84765 -16.71669 -16.58799 -16.12955 -15.68160 -15.46105 -15.25597 -14.58929 -14.29266 -13.99571 -13.79385 -13.32772 -13.02539 -12.89731 -12.77886 -12.64637 -12.42767 -12.19129 -11.96539 -11.71013 -11.41808 -11.38153 -11.29287 -11.16004 -10.93887 -10.72914 -10.50462 -8.90030 -8.13110 -6.41761 1.38131 1.38748 1.49689 2.36849 3.09649 3.15855 3.82866 4.01372 4.07886 4.17991 4.30855 4.35878 4.40959 4.50766 4.60936 4.67176 4.78569 4.87850 4.91443 4.95918 5.08731 5.12992 5.18395 5.19277 5.29059 5.37304 5.44893 5.51096 5.56553 5.58512 5.65774 5.70231 5.98290 6.31217 6.36093 6.71887 7.30473 7.50171 8.88072 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053382 B = 0.006433 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.394108 B = 4351.679631 C = 4489.358003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.046 0.954 4 C -0.096 4.096 5 C -0.104 4.104 6 C 0.059 3.941 7 N -0.517 5.517 8 C 0.041 3.959 9 C 0.201 3.799 10 H 0.022 0.978 11 O -0.574 6.574 12 C -0.586 4.586 13 H 0.060 0.940 14 C 0.025 3.975 15 N -0.902 5.902 16 Si 0.959 3.041 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.264 1.264 20 C 0.065 3.935 21 C -0.103 4.103 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.016 0.984 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.352 0.648 34 H 0.260 0.740 35 H 0.023 0.977 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.123 -6.078 4.285 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.065 0.935 4 C -0.134 4.134 5 C -0.142 4.142 6 C -0.070 4.070 7 N -0.240 5.240 8 C -0.087 4.087 9 C 0.142 3.858 10 H 0.040 0.960 11 O -0.378 6.378 12 C -0.625 4.625 13 H 0.078 0.922 14 C -0.177 4.177 15 N -0.539 5.539 16 Si 0.784 3.216 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.063 4.063 21 C -0.141 4.141 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.197 0.803 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.387 -5.853 4.883 14.544 hybrid contribution 1.861 0.637 -1.040 2.225 sum -10.526 -5.216 3.843 12.360 Atomic orbital electron populations 1.21816 0.93619 1.02200 1.01828 1.20906 0.96326 0.98581 0.95075 0.93500 1.21206 0.95270 1.00035 0.96884 1.21926 0.95390 1.00789 0.96089 1.21827 0.98585 0.92548 0.94046 1.62036 1.08754 1.42425 1.10745 1.22864 0.88587 0.97636 0.99629 1.19926 0.89595 0.90860 0.85384 0.95987 1.86536 1.76966 1.49957 1.24305 1.22079 0.97887 0.94959 1.47554 0.92215 1.25906 1.02665 0.94678 0.94424 1.70220 1.37471 1.00489 1.45733 0.85569 0.79512 0.77748 0.78812 1.19781 1.21042 1.18872 1.20929 0.93776 0.98391 0.93164 1.20674 0.94346 1.00975 0.98123 0.91897 0.92176 0.92672 0.91314 0.92161 0.91822 0.91832 0.94079 0.96520 0.91472 0.91123 0.80343 0.93109 0.95864 0.92549 0.91103 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.90 71.98 0.64 -1.99 16 2 C -0.09 -2.25 2.39 -11.10 -0.03 -2.28 16 3 H 0.05 1.36 7.17 -2.39 -0.02 1.35 16 4 C -0.10 -2.36 4.98 30.21 0.15 -2.21 16 5 C -0.10 -2.93 6.15 31.39 0.19 -2.73 16 6 C 0.06 2.18 3.89 87.16 0.34 2.52 16 7 N -0.52 -18.87 4.45 -911.80 -4.06 -22.93 16 8 C 0.04 1.71 4.88 86.30 0.42 2.13 16 9 C 0.20 10.23 2.53 29.85 0.08 10.31 16 10 H 0.02 1.29 6.31 -2.38 -0.02 1.27 16 11 O -0.57 -29.34 9.99 -148.98 -1.49 -30.83 16 12 C -0.59 -32.32 8.76 25.60 0.22 -32.09 16 13 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 14 C 0.03 1.43 5.40 84.65 0.46 1.89 16 15 N -0.90 -54.50 12.84 21.45 0.28 -54.23 16 16 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 C 0.06 2.22 3.54 83.94 0.30 2.52 16 21 C -0.10 -2.79 4.92 28.92 0.14 -2.64 16 22 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.06 1.04 8.10 -2.38 -0.02 1.02 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 1.40 7.69 -2.39 -0.02 1.38 16 26 H 0.06 1.54 7.38 -2.39 -0.02 1.52 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.04 1.66 6.68 -2.39 -0.02 1.65 16 30 H 0.02 0.68 6.51 -2.39 -0.02 0.67 16 31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.07 2.79 7.82 -2.39 -0.02 2.77 16 33 H 0.35 16.13 8.90 -74.06 -0.66 15.48 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.02 0.94 6.12 -2.39 -0.01 0.93 16 36 H 0.06 1.93 7.29 -2.39 -0.02 1.91 16 37 H 0.07 1.72 8.02 -2.38 -0.02 1.70 16 38 H 0.07 1.76 7.58 -2.39 -0.02 1.75 16 Total: -1.00 -62.38 286.78 0.03 -62.35 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.37 Total: 24.56 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 2.91 Total: -24.58 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -3.78 Total: -77.15 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.49 Total: -30.83 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -62.38 0.03 -62.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929362894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.479 kcal (2) G-P(sol) polarization free energy of solvation -62.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds