Wall clock time and date at job start Sun Mar 29 2020 22:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.45261 * 2 1 4 4 C 1.53041 * 109.45863 * 240.02948 * 2 1 3 5 5 C 1.53113 * 109.27722 * 299.16249 * 4 2 1 6 6 C 1.53116 * 109.16169 * 302.34539 * 5 4 2 7 7 C 1.53037 * 109.27958 * 57.65690 * 6 5 4 8 8 H 1.09002 * 109.46279 * 60.83680 * 7 6 5 9 9 C 1.52998 * 109.45676 * 180.80801 * 7 6 5 10 10 N 1.46838 * 109.46474 * 119.97509 * 2 1 3 11 11 C 1.46898 * 111.00327 * 294.17658 * 10 2 1 12 12 C 1.53003 * 109.46916 * 292.35373 * 11 10 2 13 13 H 1.09000 * 109.47087 * 60.00013 * 12 11 10 14 14 O 1.42899 * 109.47223 * 299.99859 * 12 11 10 15 15 C 1.50701 * 109.47066 * 179.97438 * 12 11 10 16 16 H 1.07999 * 119.99803 * 0.02562 * 15 12 11 17 17 C 1.37871 * 119.99932 * 179.97438 * 15 12 11 18 18 N 1.31517 * 120.00124 * 179.97438 * 17 15 12 19 19 Si 1.86798 * 120.00262 * 0.02562 * 17 15 12 20 20 H 1.48497 * 109.47179 * 89.99777 * 19 17 15 21 21 H 1.48500 * 109.47366 * 209.99982 * 19 17 15 22 22 H 1.48500 * 109.46854 * 330.00140 * 19 17 15 23 23 H 1.08999 * 109.46542 * 300.02262 * 1 2 3 24 24 H 1.08996 * 109.46726 * 60.02229 * 1 2 3 25 25 H 1.08993 * 109.46734 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.49984 * 179.22123 * 4 2 1 27 27 H 1.08996 * 109.50139 * 59.10505 * 4 2 1 28 28 H 1.09007 * 109.52344 * 182.44388 * 5 4 2 29 29 H 1.09003 * 109.57892 * 62.28659 * 5 4 2 30 30 H 1.09003 * 109.50374 * 297.71463 * 6 5 4 31 31 H 1.09004 * 109.50627 * 177.59738 * 6 5 4 32 32 H 1.09003 * 109.47477 * 187.03881 * 9 7 6 33 33 H 1.08995 * 109.47306 * 307.04676 * 9 7 6 34 34 H 1.09008 * 109.46738 * 67.04530 * 9 7 6 35 35 H 1.09000 * 109.47232 * 172.35474 * 11 10 2 36 36 H 1.08998 * 109.47169 * 52.34915 * 11 10 2 37 37 H 0.96700 * 113.99961 * 300.00257 * 14 12 11 38 38 H 0.96998 * 120.00457 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 1.5443 -2.1695 -1.2357 6 6 2.0269 -2.8531 0.0465 7 6 1.5175 -2.0705 1.2590 8 1 0.4275 -2.0608 1.2531 9 6 2.0144 -2.7389 2.5424 10 7 2.0194 -0.6917 1.1993 11 6 1.6653 0.0505 2.4165 12 6 2.4433 1.3674 2.4553 13 1 2.1907 1.9646 1.5791 14 8 3.8456 1.0923 2.4561 15 6 2.0796 2.1291 3.7037 16 1 1.3653 1.7152 4.4000 17 6 2.6595 3.3540 3.9574 18 7 2.3417 4.0190 5.0466 19 14 3.8955 4.0696 2.7534 20 1 3.1833 4.8943 1.7446 21 1 4.8685 4.9173 3.4881 22 1 4.6171 2.9660 2.0704 23 1 -0.3632 0.5142 0.8898 24 1 -0.3632 0.5135 -0.8902 25 1 -0.3632 -1.0276 0.0005 26 1 3.1298 -0.7092 -1.2577 27 1 1.6637 -0.2163 -2.1399 28 1 1.9409 -2.6988 -2.1021 29 1 0.4548 -2.1831 -1.2679 30 1 3.1167 -2.8750 0.0592 31 1 1.6415 -3.8721 0.0830 32 1 1.5518 -2.2587 3.4048 33 1 1.7478 -3.7956 2.5285 34 1 3.0978 -2.6383 2.6084 35 1 1.9179 -0.5467 3.2926 36 1 0.5957 0.2604 2.4159 37 1 4.1422 0.5634 3.2093 38 1 2.7494 4.8809 5.2250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929603679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:13 Heat of formation + Delta-G solvation = -53.902040 kcal Electronic energy + Delta-G solvation = -17208.878342 eV Core-core repulsion = 14664.971768 eV Total energy + Delta-G solvation = -2543.906575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62536 -35.97626 -33.18968 -32.79505 -32.17632 -28.85202 -27.51707 -26.36823 -24.84163 -22.58714 -21.09678 -20.14042 -18.20395 -17.22783 -15.48501 -15.37185 -14.84795 -14.68006 -14.44765 -13.90603 -13.29593 -13.23850 -12.81193 -12.68874 -12.36590 -12.16118 -11.84247 -11.55747 -11.38398 -11.36256 -11.09487 -10.87692 -10.58870 -10.41876 -10.36006 -10.10498 -9.77792 -9.63248 -8.92595 -8.57305 -8.16378 -7.59044 -6.09044 -4.19622 3.42319 3.51874 3.80546 4.33213 4.58305 4.94935 5.00943 5.04147 5.26579 5.30141 5.49722 5.59770 5.63267 5.68349 5.71055 5.82733 5.90368 5.92837 6.02768 6.09360 6.12258 6.18278 6.22201 6.28117 6.34015 6.42216 6.45370 6.49826 6.73473 6.79843 7.38090 7.52272 7.75203 7.81077 8.34314 8.88369 9.18490 9.56842 11.01732 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036212 B = 0.008400 C = 0.007860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.036429 B = 3332.619493 C = 3561.496556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.079 3.921 3 H 0.086 0.914 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.109 4.109 7 C 0.076 3.924 8 H 0.036 0.964 9 C -0.147 4.147 10 N -0.517 5.517 11 C 0.032 3.968 12 C 0.203 3.797 13 H 0.050 0.950 14 O -0.570 6.570 15 C -0.564 4.564 16 H 0.070 0.930 17 C 0.083 3.917 18 N -0.896 5.896 19 Si 0.870 3.130 20 H -0.289 1.289 21 H -0.297 1.297 22 H -0.214 1.214 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.353 0.647 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 -12.287 -10.446 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.029 4.029 3 H 0.104 0.896 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.146 4.146 7 C -0.032 4.032 8 H 0.054 0.946 9 C -0.204 4.204 10 N -0.241 5.241 11 C -0.095 4.095 12 C 0.145 3.855 13 H 0.068 0.932 14 O -0.375 6.375 15 C -0.602 4.602 16 H 0.088 0.912 17 C -0.121 4.121 18 N -0.533 5.533 19 Si 0.696 3.304 20 H -0.216 1.216 21 H -0.224 1.224 22 H -0.137 1.137 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.198 0.802 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.073 -11.827 -10.927 16.138 hybrid contribution -0.562 0.354 0.202 0.694 sum -1.635 -11.473 -10.725 15.790 Atomic orbital electron populations 1.22514 0.98450 1.01633 1.02206 1.21650 0.92064 0.98845 0.90386 0.89573 1.21570 1.01450 0.95020 0.96670 1.21595 1.00382 0.96307 0.97508 1.21599 1.01616 0.97532 0.93900 1.21589 0.96654 0.89924 0.95074 0.94602 1.21911 1.02446 0.99106 0.96978 1.62192 1.58878 1.00669 1.02331 1.22942 0.98401 0.97122 0.91024 1.19685 0.79015 0.90095 0.96706 0.93235 1.86655 1.25751 1.74744 1.50329 1.21544 1.27463 1.04193 1.06991 0.91218 1.24981 0.95817 0.96268 0.95028 1.69963 1.43168 1.14303 1.25849 0.87043 0.82108 0.79531 0.81683 1.21585 1.22354 1.13652 0.92035 0.92660 0.92538 0.91200 0.92230 0.92500 0.92381 0.91243 0.92416 0.92376 0.92998 0.91628 0.90800 0.94867 0.80183 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 8.20 37.16 0.30 -2.46 16 2 C 0.08 1.27 2.79 -67.72 -0.19 1.08 16 3 H 0.09 1.58 6.29 -51.93 -0.33 1.25 16 4 C -0.11 -1.47 5.61 -26.65 -0.15 -1.62 16 5 C -0.12 -1.42 5.69 -26.61 -0.15 -1.57 16 6 C -0.11 -1.34 5.37 -26.65 -0.14 -1.49 16 7 C 0.08 1.09 2.15 -67.72 -0.15 0.95 16 8 H 0.04 0.53 6.19 -51.93 -0.32 0.21 16 9 C -0.15 -1.99 8.55 37.16 0.32 -1.67 16 10 N -0.52 -8.81 4.29 -218.75 -0.94 -9.75 16 11 C 0.03 0.64 4.17 -3.82 -0.02 0.62 16 12 C 0.20 4.77 2.23 -27.88 -0.06 4.71 16 13 H 0.05 1.22 5.92 -51.93 -0.31 0.91 16 14 O -0.57 -13.23 10.01 -35.23 -0.35 -13.58 16 15 C -0.56 -15.75 9.34 -34.44 -0.32 -16.07 16 16 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 17 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 18 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 19 Si 0.87 22.16 26.99 -169.99 -4.59 17.57 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 22 H -0.21 -5.36 5.30 56.52 0.30 -5.06 16 23 H 0.06 1.00 6.40 -51.93 -0.33 0.67 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.77 4.80 -51.93 -0.25 0.52 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.83 6.50 -51.93 -0.34 0.49 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 35 H 0.07 1.45 5.72 -51.93 -0.30 1.15 16 36 H 0.03 0.67 6.15 -51.93 -0.32 0.35 16 37 H 0.35 7.41 9.04 45.56 0.41 7.82 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 279.32 15.07 4.21 4.21 Total: -1.00 -30.40 279.32 -7.01 -37.40 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.46 Total: 6.17 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -0.65 Total: -15.20 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.17 Total: -36.57 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.35 Total: -13.58 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.59 Total: 17.57 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.40 -7.01 -37.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929603679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.500 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds