Wall clock time and date at job start Sun Mar 29 2020 22:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.45261 * 2 1 4 4 C 1.53041 * 109.45863 * 240.02948 * 2 1 3 5 5 C 1.53113 * 109.27722 * 299.16249 * 4 2 1 6 6 C 1.53116 * 109.16169 * 302.34539 * 5 4 2 7 7 C 1.53037 * 109.27958 * 57.65690 * 6 5 4 8 8 H 1.09002 * 109.46279 * 60.83680 * 7 6 5 9 9 C 1.52998 * 109.45676 * 180.80801 * 7 6 5 10 10 N 1.46838 * 109.46474 * 119.97509 * 2 1 3 11 11 C 1.46898 * 111.00327 * 294.17658 * 10 2 1 12 12 C 1.53003 * 109.46916 * 292.35373 * 11 10 2 13 13 H 1.09000 * 109.47087 * 60.00013 * 12 11 10 14 14 O 1.42899 * 109.47223 * 299.99859 * 12 11 10 15 15 C 1.50701 * 109.47066 * 179.97438 * 12 11 10 16 16 H 1.07999 * 119.99803 * 0.02562 * 15 12 11 17 17 C 1.37871 * 119.99932 * 179.97438 * 15 12 11 18 18 N 1.31517 * 120.00124 * 179.97438 * 17 15 12 19 19 Si 1.86798 * 120.00262 * 0.02562 * 17 15 12 20 20 H 1.48497 * 109.47179 * 89.99777 * 19 17 15 21 21 H 1.48500 * 109.47366 * 209.99982 * 19 17 15 22 22 H 1.48500 * 109.46854 * 330.00140 * 19 17 15 23 23 H 1.08999 * 109.46542 * 300.02262 * 1 2 3 24 24 H 1.08996 * 109.46726 * 60.02229 * 1 2 3 25 25 H 1.08993 * 109.46734 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.49984 * 179.22123 * 4 2 1 27 27 H 1.08996 * 109.50139 * 59.10505 * 4 2 1 28 28 H 1.09007 * 109.52344 * 182.44388 * 5 4 2 29 29 H 1.09003 * 109.57892 * 62.28659 * 5 4 2 30 30 H 1.09003 * 109.50374 * 297.71463 * 6 5 4 31 31 H 1.09004 * 109.50627 * 177.59738 * 6 5 4 32 32 H 1.09003 * 109.47477 * 187.03881 * 9 7 6 33 33 H 1.08995 * 109.47306 * 307.04676 * 9 7 6 34 34 H 1.09008 * 109.46738 * 67.04530 * 9 7 6 35 35 H 1.09000 * 109.47232 * 172.35474 * 11 10 2 36 36 H 1.08998 * 109.47169 * 52.34915 * 11 10 2 37 37 H 0.96700 * 113.99961 * 300.00257 * 14 12 11 38 38 H 0.96998 * 120.00457 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 1.5443 -2.1695 -1.2357 6 6 2.0269 -2.8531 0.0465 7 6 1.5175 -2.0705 1.2590 8 1 0.4275 -2.0608 1.2531 9 6 2.0144 -2.7389 2.5424 10 7 2.0194 -0.6917 1.1993 11 6 1.6653 0.0505 2.4165 12 6 2.4433 1.3674 2.4553 13 1 2.1907 1.9646 1.5791 14 8 3.8456 1.0923 2.4561 15 6 2.0796 2.1291 3.7037 16 1 1.3653 1.7152 4.4000 17 6 2.6595 3.3540 3.9574 18 7 2.3417 4.0190 5.0466 19 14 3.8955 4.0696 2.7534 20 1 3.1833 4.8943 1.7446 21 1 4.8685 4.9173 3.4881 22 1 4.6171 2.9660 2.0704 23 1 -0.3632 0.5142 0.8898 24 1 -0.3632 0.5135 -0.8902 25 1 -0.3632 -1.0276 0.0005 26 1 3.1298 -0.7092 -1.2577 27 1 1.6637 -0.2163 -2.1399 28 1 1.9409 -2.6988 -2.1021 29 1 0.4548 -2.1831 -1.2679 30 1 3.1167 -2.8750 0.0592 31 1 1.6415 -3.8721 0.0830 32 1 1.5518 -2.2587 3.4048 33 1 1.7478 -3.7956 2.5285 34 1 3.0978 -2.6383 2.6084 35 1 1.9179 -0.5467 3.2926 36 1 0.5957 0.2604 2.4159 37 1 4.1422 0.5634 3.2093 38 1 2.7494 4.8809 5.2250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929603679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:13 Heat of formation + Delta-G solvation = -76.049567 kcal Electronic energy + Delta-G solvation = -17209.838731 eV Core-core repulsion = 14664.971768 eV Total energy + Delta-G solvation = -2544.866963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.87414 -37.78475 -34.46696 -34.34757 -33.99776 -30.49548 -28.97316 -27.43186 -26.57381 -23.98979 -22.28562 -21.76641 -19.56932 -19.13390 -16.90229 -16.84345 -16.59498 -16.34002 -15.84635 -15.30317 -14.95996 -14.64887 -14.42033 -14.04516 -13.56547 -13.45531 -13.28689 -12.97559 -12.91365 -12.69028 -12.49712 -12.41495 -12.37490 -11.85060 -11.69976 -11.38727 -11.18381 -10.94357 -10.84526 -10.77496 -10.07883 -8.96619 -8.36050 -6.49969 1.37982 1.43502 1.75165 2.43729 3.01229 3.04773 3.86806 3.92448 3.98951 4.13198 4.16167 4.35760 4.43004 4.51606 4.52081 4.58972 4.59594 4.71394 4.82402 4.84255 5.00120 5.04456 5.12402 5.12578 5.17763 5.22977 5.31688 5.36378 5.39510 5.51664 5.54422 5.64476 6.08981 6.30063 6.45689 6.63104 7.23374 7.39320 8.78294 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036212 B = 0.008400 C = 0.007860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.036429 B = 3332.619493 C = 3561.496556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.072 3.928 3 H 0.057 0.943 4 C -0.105 4.105 5 C -0.117 4.117 6 C -0.104 4.104 7 C 0.072 3.928 8 H 0.036 0.964 9 C -0.144 4.144 10 N -0.523 5.523 11 C 0.047 3.953 12 C 0.212 3.788 13 H 0.042 0.958 14 O -0.572 6.572 15 C -0.565 4.565 16 H 0.035 0.965 17 C 0.029 3.971 18 N -0.940 5.940 19 Si 0.937 3.063 20 H -0.287 1.287 21 H -0.296 1.296 22 H -0.205 1.205 23 H 0.036 0.964 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.022 0.978 37 H 0.363 0.637 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.202 -13.998 -12.649 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.037 4.037 3 H 0.075 0.925 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.142 4.142 7 C -0.036 4.036 8 H 0.054 0.946 9 C -0.202 4.202 10 N -0.247 5.247 11 C -0.081 4.081 12 C 0.154 3.846 13 H 0.060 0.940 14 O -0.378 6.378 15 C -0.603 4.603 16 H 0.053 0.947 17 C -0.170 4.170 18 N -0.580 5.580 19 Si 0.761 3.239 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.127 1.127 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.210 0.790 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.686 -13.562 -13.138 18.894 hybrid contribution -0.731 0.840 0.931 1.451 sum -1.416 -12.723 -12.207 17.688 Atomic orbital electron populations 1.22433 0.97377 1.02405 1.01810 1.21720 0.93001 0.97740 0.91217 0.92471 1.21540 1.00774 0.96267 0.95654 1.21594 1.00854 0.94956 0.97988 1.21592 1.01218 0.98434 0.92963 1.21744 0.96731 0.88396 0.96707 0.94591 1.21891 1.01723 1.00540 0.96007 1.62154 1.59423 1.01823 1.01318 1.22571 0.96994 0.95684 0.92814 1.19448 0.79664 0.91512 0.93979 0.94006 1.86585 1.25233 1.75108 1.50859 1.21873 1.26152 1.04459 1.07845 0.94699 1.25827 0.97804 0.96843 0.96560 1.70083 1.44960 1.15041 1.27877 0.86010 0.79707 0.78785 0.79369 1.21329 1.22304 1.12723 0.94459 0.91014 0.91114 0.92262 0.90576 0.90345 0.91634 0.91925 0.89981 0.93885 0.90363 0.92390 0.90904 0.95942 0.78966 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.05 8.20 71.98 0.59 -4.46 16 2 C 0.07 2.22 2.79 44.94 0.13 2.34 16 3 H 0.06 2.08 6.29 -2.39 -0.02 2.06 16 4 C -0.10 -2.54 5.61 30.65 0.17 -2.37 16 5 C -0.12 -2.30 5.69 30.67 0.17 -2.12 16 6 C -0.10 -2.22 5.37 30.65 0.16 -2.05 16 7 C 0.07 1.92 2.15 44.94 0.10 2.02 16 8 H 0.04 0.98 6.19 -2.39 -0.01 0.96 16 9 C -0.14 -3.64 8.55 71.98 0.62 -3.02 16 10 N -0.52 -17.29 4.29 -846.00 -3.63 -20.92 16 11 C 0.05 1.88 4.17 86.30 0.36 2.24 16 12 C 0.21 10.02 2.23 29.85 0.07 10.09 16 13 H 0.04 2.07 5.92 -2.39 -0.01 2.06 16 14 O -0.57 -26.04 10.01 -148.98 -1.49 -27.53 16 15 C -0.57 -32.34 9.34 25.60 0.24 -32.11 16 16 H 0.03 2.19 7.99 -2.91 -0.02 2.16 16 17 C 0.03 1.72 5.47 84.65 0.46 2.18 16 18 N -0.94 -59.27 13.96 21.45 0.30 -58.97 16 19 Si 0.94 46.30 26.99 68.60 1.85 48.15 16 20 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 22 H -0.21 -9.77 5.30 99.48 0.53 -9.24 16 23 H 0.04 1.20 6.40 -2.39 -0.02 1.18 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.75 4.80 -2.39 -0.01 1.74 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 1.26 8.14 -2.38 -0.02 1.25 16 29 H 0.07 1.22 6.56 -2.39 -0.02 1.21 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.20 6.50 -2.39 -0.02 1.18 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.07 2.88 5.72 -2.39 -0.01 2.87 16 36 H 0.02 0.94 6.15 -2.39 -0.01 0.92 16 37 H 0.36 14.95 9.04 -74.06 -0.67 14.28 16 38 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -65.57 279.32 0.29 -65.29 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.19 Total: 21.23 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 3.07 Total: -27.26 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -3.33 Total: -79.89 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -1.49 Total: -27.53 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.85 Total: 48.15 kcal Total: -65.57 0.29 -65.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929603679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.764 kcal (2) G-P(sol) polarization free energy of solvation -65.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds