Wall clock time and date at job start Sun Mar 29 2020 22:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 108.96568 * 2 1 4 4 C 1.54070 * 108.98059 * 241.27892 * 2 1 3 5 5 C 1.54294 * 112.28877 * 198.26779 * 4 2 1 6 6 C 1.50456 * 113.03440 * 318.30321 * 5 4 2 7 7 C 1.54510 * 108.85826 * 92.15404 * 6 5 4 8 8 C 1.45866 * 111.58793 * 282.81050 * 7 6 5 9 9 N 1.44274 * 108.98328 * 118.80758 * 2 1 3 10 10 C 1.46902 * 110.99471 * 339.95520 * 9 2 1 11 11 C 1.53001 * 109.46454 * 171.97147 * 10 9 2 12 12 H 1.08994 * 109.47712 * 60.00444 * 11 10 9 13 13 O 1.42897 * 109.47228 * 299.99647 * 11 10 9 14 14 C 1.50701 * 109.46931 * 180.02562 * 11 10 9 15 15 H 1.08004 * 120.00102 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00412 * 179.97438 * 14 11 10 17 17 N 1.31521 * 119.99688 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00247 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.46901 * 60.00245 * 18 16 14 20 20 H 1.48499 * 109.46895 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47120 * 300.00131 * 18 16 14 22 22 H 1.09005 * 109.47055 * 301.18991 * 1 2 3 23 23 H 1.08999 * 109.47139 * 61.19339 * 1 2 3 24 24 H 1.08999 * 109.46855 * 181.19466 * 1 2 3 25 25 H 1.09002 * 108.91812 * 318.99040 * 4 2 1 26 26 H 1.08995 * 108.91931 * 77.54248 * 4 2 1 27 27 H 1.09004 * 108.76905 * 79.21512 * 5 4 2 28 28 H 1.08993 * 108.77248 * 197.38255 * 5 4 2 29 29 H 1.09000 * 109.57613 * 332.33991 * 6 5 4 30 30 H 1.09003 * 109.57623 * 211.96664 * 6 5 4 31 31 H 1.08997 * 109.06019 * 162.26294 * 7 6 5 32 32 H 1.09006 * 109.05487 * 43.35292 * 7 6 5 33 33 H 1.08999 * 108.79078 * 182.20924 * 8 7 6 34 34 H 1.08997 * 108.79253 * 300.43126 * 8 7 6 35 35 H 1.08996 * 109.47329 * 291.96719 * 10 9 2 36 36 H 1.08996 * 109.47063 * 51.97759 * 10 9 2 37 37 H 0.96698 * 114.00807 * 300.00387 * 13 11 10 38 38 H 0.96994 * 119.99538 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8842 1.0308 0.0000 4 6 2.0311 -0.7001 -1.2777 5 6 3.5034 -1.1466 -1.1612 6 6 4.3791 -0.1197 -0.4962 7 6 4.4283 -0.4121 1.0202 8 6 3.2107 0.0288 1.6916 9 7 1.9993 -0.6574 1.1954 10 6 0.9521 -0.6873 2.2253 11 6 1.4118 -1.5603 3.3946 12 1 2.3269 -1.1472 3.8189 13 8 1.6599 -2.8883 2.9289 14 6 0.3374 -1.5916 4.4509 15 1 -0.5812 -1.0432 4.3032 16 6 0.5271 -2.3202 5.6060 17 7 1.6460 -2.9876 5.7862 18 14 -0.8044 -2.3583 6.9156 19 1 -2.0512 -2.9206 6.3375 20 1 -0.3583 -3.2057 8.0505 21 1 -1.0618 -0.9783 7.4001 22 1 -0.3633 0.5322 0.8792 23 1 -0.3633 0.4952 -0.9005 24 1 -0.3633 -1.0274 0.0214 25 1 1.4102 -1.5757 -1.4675 26 1 1.9357 -0.0125 -2.1180 27 1 3.5452 -2.0701 -0.5837 28 1 3.8904 -1.3431 -2.1610 29 1 3.9666 0.8753 -0.6630 30 1 5.3855 -0.1740 -0.9114 31 1 5.2824 0.1069 1.4552 32 1 4.5502 -1.4846 1.1721 33 1 3.3099 -0.1626 2.7600 34 1 3.0942 1.1016 1.5386 35 1 0.7629 0.3256 2.5806 36 1 0.0371 -1.1005 1.8012 37 1 0.8874 -3.3188 2.5379 38 1 1.7796 -3.4998 6.5989 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929649442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:33 Heat of formation + Delta-G solvation = -51.086870 kcal Electronic energy + Delta-G solvation = -17056.588388 eV Core-core repulsion = 14512.803888 eV Total energy + Delta-G solvation = -2543.784500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.30529 -35.70330 -34.02264 -32.73616 -32.02007 -28.77639 -27.67713 -26.07500 -24.14732 -22.41069 -20.99011 -19.68797 -18.72702 -16.88304 -15.62373 -15.32593 -14.85883 -14.54246 -14.08150 -13.92339 -13.44749 -13.32578 -12.65956 -12.36755 -12.34387 -12.04902 -11.59588 -11.40183 -10.98301 -10.90894 -10.86049 -10.80038 -10.38167 -10.34450 -10.12066 -10.03467 -9.93802 -9.85346 -8.83886 -8.50343 -8.01930 -7.50103 -5.96537 -4.14769 3.30399 3.35828 3.37333 4.35205 4.51898 5.03887 5.13311 5.22025 5.31055 5.43654 5.52702 5.57083 5.73613 5.77620 5.87052 5.95009 6.03591 6.09853 6.14842 6.28027 6.30957 6.35874 6.47550 6.51184 6.56592 6.60666 6.65726 6.73797 6.83116 6.91953 7.67968 7.81718 7.84909 7.99055 8.26033 8.89338 9.51292 9.68424 11.07450 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040564 B = 0.007327 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.102908 B = 3820.787329 C = 4158.458981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.080 3.920 3 H 0.036 0.964 4 C -0.100 4.100 5 C -0.109 4.109 6 C -0.113 4.113 7 C -0.112 4.112 8 C 0.054 3.946 9 N -0.511 5.511 10 C 0.025 3.975 11 C 0.236 3.764 12 H 0.053 0.947 13 O -0.553 6.553 14 C -0.575 4.575 15 H 0.053 0.947 16 C 0.080 3.920 17 N -0.859 5.859 18 Si 0.888 3.112 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.021 0.979 35 H 0.023 0.977 36 H 0.073 0.927 37 H 0.341 0.659 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 5.670 -11.628 13.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.029 4.029 3 H 0.054 0.946 4 C -0.138 4.138 5 C -0.147 4.147 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.074 4.074 9 N -0.235 5.235 10 C -0.102 4.102 11 C 0.178 3.822 12 H 0.070 0.930 13 O -0.355 6.355 14 C -0.613 4.613 15 H 0.071 0.929 16 C -0.126 4.126 17 N -0.494 5.494 18 Si 0.715 3.285 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.092 0.908 37 H 0.184 0.816 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.500 5.197 -11.393 12.769 hybrid contribution -1.580 0.822 0.819 1.960 sum 0.920 6.018 -10.573 12.201 Atomic orbital electron populations 1.22268 0.95833 1.02408 1.01215 1.21459 0.94006 0.95394 0.92078 0.94614 1.21946 0.96300 0.99774 0.95826 1.21175 0.94246 0.99988 0.99255 1.21325 0.98755 0.99025 0.95949 1.20588 0.96927 1.02792 0.94722 1.20991 0.91166 0.94577 1.00647 1.61681 1.05497 1.51962 1.04384 1.23264 0.94043 0.99244 0.93649 1.19356 0.95694 0.79976 0.87136 0.92956 1.86554 1.37629 1.30103 1.81178 1.21644 1.03519 1.32531 1.03615 0.92888 1.25020 0.95190 0.94671 0.97726 1.70076 1.24185 1.29190 1.25969 0.86759 0.82357 0.77992 0.81369 1.20166 1.21208 1.20273 0.92146 0.93301 0.91639 0.92193 0.93284 0.91021 0.93729 0.92790 0.92766 0.92562 0.90815 0.90447 0.96077 0.95884 0.90836 0.81609 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 7.65 37.15 0.28 -2.01 16 2 C 0.08 1.24 2.37 -68.56 -0.16 1.07 16 3 H 0.04 0.55 6.50 -51.93 -0.34 0.21 16 4 C -0.10 -1.37 5.53 -25.50 -0.14 -1.51 16 5 C -0.11 -1.49 5.42 -27.32 -0.15 -1.64 16 6 C -0.11 -1.50 5.60 -27.21 -0.15 -1.65 16 7 C -0.11 -1.73 5.53 -29.31 -0.16 -1.89 16 8 C 0.05 0.94 4.78 -6.70 -0.03 0.91 16 9 N -0.51 -9.33 4.09 -231.43 -0.95 -10.28 16 10 C 0.03 0.52 3.24 -3.82 -0.01 0.51 16 11 C 0.24 6.01 2.75 -27.88 -0.08 5.93 16 12 H 0.05 1.47 6.23 -51.93 -0.32 1.15 16 13 O -0.55 -14.54 12.59 -35.23 -0.44 -14.99 16 14 C -0.57 -15.84 8.76 -34.44 -0.30 -16.15 16 15 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 16 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 17 N -0.86 -25.58 12.84 55.43 0.71 -24.87 16 18 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H 0.06 0.91 6.49 -51.93 -0.34 0.58 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.98 7.29 -51.93 -0.38 0.60 16 25 H 0.06 0.83 7.98 -51.93 -0.41 0.42 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.13 7.38 -51.93 -0.38 0.75 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.70 7.15 -51.93 -0.37 0.33 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.27 7.59 -51.93 -0.39 0.87 16 33 H 0.08 1.56 5.78 -51.93 -0.30 1.26 16 34 H 0.02 0.35 7.24 -51.93 -0.38 -0.03 16 35 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 36 H 0.07 1.48 5.65 -51.93 -0.29 1.19 16 37 H 0.34 8.13 9.04 45.56 0.41 8.54 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 286.22 15.07 4.31 4.31 Total: -1.00 -29.57 286.22 -7.94 -37.51 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.55 Total: 6.32 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -1.00 Total: -14.27 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.24 Total: -35.15 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.44 Total: -14.99 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.57 -7.94 -37.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929649442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.573 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds