Wall clock time and date at job start Sun Mar 29 2020 22:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 108.96568 * 2 1 4 4 C 1.54070 * 108.98059 * 241.27892 * 2 1 3 5 5 C 1.54294 * 112.28877 * 198.26779 * 4 2 1 6 6 C 1.50456 * 113.03440 * 318.30321 * 5 4 2 7 7 C 1.54510 * 108.85826 * 92.15404 * 6 5 4 8 8 C 1.45866 * 111.58793 * 282.81050 * 7 6 5 9 9 N 1.44274 * 108.98328 * 118.80758 * 2 1 3 10 10 C 1.46902 * 110.99471 * 339.95520 * 9 2 1 11 11 C 1.53001 * 109.46454 * 171.97147 * 10 9 2 12 12 H 1.08994 * 109.47712 * 60.00444 * 11 10 9 13 13 O 1.42897 * 109.47228 * 299.99647 * 11 10 9 14 14 C 1.50701 * 109.46931 * 180.02562 * 11 10 9 15 15 H 1.08004 * 120.00102 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00412 * 179.97438 * 14 11 10 17 17 N 1.31521 * 119.99688 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00247 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.46901 * 60.00245 * 18 16 14 20 20 H 1.48499 * 109.46895 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47120 * 300.00131 * 18 16 14 22 22 H 1.09005 * 109.47055 * 301.18991 * 1 2 3 23 23 H 1.08999 * 109.47139 * 61.19339 * 1 2 3 24 24 H 1.08999 * 109.46855 * 181.19466 * 1 2 3 25 25 H 1.09002 * 108.91812 * 318.99040 * 4 2 1 26 26 H 1.08995 * 108.91931 * 77.54248 * 4 2 1 27 27 H 1.09004 * 108.76905 * 79.21512 * 5 4 2 28 28 H 1.08993 * 108.77248 * 197.38255 * 5 4 2 29 29 H 1.09000 * 109.57613 * 332.33991 * 6 5 4 30 30 H 1.09003 * 109.57623 * 211.96664 * 6 5 4 31 31 H 1.08997 * 109.06019 * 162.26294 * 7 6 5 32 32 H 1.09006 * 109.05487 * 43.35292 * 7 6 5 33 33 H 1.08999 * 108.79078 * 182.20924 * 8 7 6 34 34 H 1.08997 * 108.79253 * 300.43126 * 8 7 6 35 35 H 1.08996 * 109.47329 * 291.96719 * 10 9 2 36 36 H 1.08996 * 109.47063 * 51.97759 * 10 9 2 37 37 H 0.96698 * 114.00807 * 300.00387 * 13 11 10 38 38 H 0.96994 * 119.99538 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8842 1.0308 0.0000 4 6 2.0311 -0.7001 -1.2777 5 6 3.5034 -1.1466 -1.1612 6 6 4.3791 -0.1197 -0.4962 7 6 4.4283 -0.4121 1.0202 8 6 3.2107 0.0288 1.6916 9 7 1.9993 -0.6574 1.1954 10 6 0.9521 -0.6873 2.2253 11 6 1.4118 -1.5603 3.3946 12 1 2.3269 -1.1472 3.8189 13 8 1.6599 -2.8883 2.9289 14 6 0.3374 -1.5916 4.4509 15 1 -0.5812 -1.0432 4.3032 16 6 0.5271 -2.3202 5.6060 17 7 1.6460 -2.9876 5.7862 18 14 -0.8044 -2.3583 6.9156 19 1 -2.0512 -2.9206 6.3375 20 1 -0.3583 -3.2057 8.0505 21 1 -1.0618 -0.9783 7.4001 22 1 -0.3633 0.5322 0.8792 23 1 -0.3633 0.4952 -0.9005 24 1 -0.3633 -1.0274 0.0214 25 1 1.4102 -1.5757 -1.4675 26 1 1.9357 -0.0125 -2.1180 27 1 3.5452 -2.0701 -0.5837 28 1 3.8904 -1.3431 -2.1610 29 1 3.9666 0.8753 -0.6630 30 1 5.3855 -0.1740 -0.9114 31 1 5.2824 0.1069 1.4552 32 1 4.5502 -1.4846 1.1721 33 1 3.3099 -0.1626 2.7600 34 1 3.0942 1.1016 1.5386 35 1 0.7629 0.3256 2.5806 36 1 0.0371 -1.1005 1.8012 37 1 0.8874 -3.3188 2.5379 38 1 1.7796 -3.4998 6.5989 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929649442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:32 Heat of formation + Delta-G solvation = -71.921492 kcal Electronic energy + Delta-G solvation = -17057.491845 eV Core-core repulsion = 14512.803888 eV Total energy + Delta-G solvation = -2544.687957 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67353 -37.55304 -35.40736 -34.21885 -34.01350 -30.50407 -29.01153 -27.65469 -25.82484 -23.70190 -22.65110 -21.11115 -20.06892 -18.88887 -17.09653 -16.76400 -16.64263 -16.19686 -15.67839 -15.56730 -14.97984 -14.72405 -14.27412 -13.73952 -13.61280 -13.40350 -13.13889 -12.91040 -12.78300 -12.72511 -12.62118 -12.18919 -12.04869 -11.64216 -11.53892 -11.35411 -11.23482 -11.08476 -10.84236 -10.60426 -10.03950 -8.97696 -8.11903 -6.38128 1.40106 1.41960 1.50113 2.38793 3.06908 3.14396 3.83955 3.93755 4.08048 4.25933 4.32211 4.34923 4.36448 4.44045 4.54371 4.61090 4.70110 4.81962 4.86092 4.93564 4.98123 5.01988 5.06097 5.23005 5.25627 5.34383 5.44754 5.47727 5.52944 5.60832 5.65015 5.81509 6.07201 6.30618 6.52798 6.76221 7.36093 7.65176 8.92259 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040564 B = 0.007327 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.102908 B = 3820.787329 C = 4158.458981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.075 3.925 3 H 0.043 0.957 4 C -0.097 4.097 5 C -0.109 4.109 6 C -0.105 4.105 7 C -0.111 4.111 8 C 0.056 3.944 9 N -0.521 5.521 10 C 0.046 3.954 11 C 0.237 3.763 12 H 0.017 0.983 13 O -0.569 6.569 14 C -0.590 4.590 15 H 0.058 0.942 16 C 0.025 3.975 17 N -0.900 5.900 18 Si 0.959 3.041 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.269 1.269 22 H 0.048 0.952 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.018 0.982 36 H 0.081 0.919 37 H 0.350 0.650 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 6.699 -13.135 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.034 4.034 3 H 0.061 0.939 4 C -0.135 4.135 5 C -0.147 4.147 6 C -0.142 4.142 7 C -0.149 4.149 8 C -0.072 4.072 9 N -0.245 5.245 10 C -0.082 4.082 11 C 0.179 3.821 12 H 0.035 0.965 13 O -0.372 6.372 14 C -0.628 4.628 15 H 0.076 0.924 16 C -0.177 4.177 17 N -0.537 5.537 18 Si 0.784 3.216 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.194 1.194 22 H 0.067 0.933 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.037 0.963 36 H 0.099 0.901 37 H 0.194 0.806 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.658 6.238 -12.920 14.442 hybrid contribution -1.277 0.513 1.254 1.862 sum 0.380 6.751 -11.666 13.484 Atomic orbital electron populations 1.22212 0.94985 1.02058 1.02113 1.21619 0.94846 0.95679 0.91289 0.93932 1.21941 0.96021 1.00087 0.95470 1.21174 0.94644 0.98782 1.00076 1.21282 1.00041 0.99255 0.93652 1.20558 0.96280 1.01180 0.96871 1.20995 0.92006 0.95391 0.98779 1.61662 1.04984 1.53195 1.04664 1.22860 0.94825 0.97744 0.92766 1.19229 0.93790 0.80321 0.88782 0.96530 1.86502 1.38401 1.30890 1.81405 1.22057 1.04047 1.32275 1.04419 0.92355 1.25907 0.97450 0.94210 1.00121 1.70227 1.26400 1.30291 1.26748 0.85620 0.79441 0.78278 0.78270 1.19088 1.21017 1.19406 0.93284 0.90493 0.92476 0.92607 0.90557 0.93894 0.91420 0.91814 0.90687 0.91091 0.93408 0.94101 0.94719 0.96339 0.90060 0.80600 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 7.65 71.98 0.55 -3.62 16 2 C 0.07 2.15 2.37 45.77 0.11 2.26 16 3 H 0.04 1.19 6.50 -2.39 -0.02 1.17 16 4 C -0.10 -2.38 5.53 31.39 0.17 -2.21 16 5 C -0.11 -2.74 5.42 30.21 0.16 -2.58 16 6 C -0.10 -2.53 5.60 30.28 0.17 -2.36 16 7 C -0.11 -3.39 5.53 28.92 0.16 -3.23 16 8 C 0.06 1.98 4.78 83.94 0.40 2.38 16 9 N -0.52 -18.98 4.09 -886.12 -3.62 -22.61 16 10 C 0.05 1.92 3.24 86.30 0.28 2.19 16 11 C 0.24 12.44 2.75 29.85 0.08 12.52 16 12 H 0.02 1.00 6.23 -2.39 -0.01 0.99 16 13 O -0.57 -30.92 12.59 -148.98 -1.88 -32.80 16 14 C -0.59 -32.99 8.76 25.60 0.22 -32.77 16 15 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 16 C 0.03 1.45 5.40 84.65 0.46 1.91 16 17 N -0.90 -54.92 12.84 21.45 0.28 -54.65 16 18 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H 0.05 1.41 6.49 -2.38 -0.02 1.39 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 1.61 7.29 -2.39 -0.02 1.60 16 25 H 0.06 1.42 7.98 -2.39 -0.02 1.40 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.04 1.33 7.38 -2.38 -0.02 1.31 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.44 7.15 -2.39 -0.02 1.42 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.69 7.59 -2.38 -0.02 1.68 16 33 H 0.04 1.74 5.78 -2.39 -0.01 1.72 16 34 H 0.03 1.12 7.24 -2.39 -0.02 1.11 16 35 H 0.02 0.78 7.74 -2.39 -0.02 0.76 16 36 H 0.08 3.26 5.65 -2.39 -0.01 3.24 16 37 H 0.35 17.11 9.04 -74.06 -0.67 16.44 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -64.32 286.22 -0.07 -64.39 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.36 Total: 25.28 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 2.77 Total: -25.49 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -3.35 Total: -77.25 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -1.88 Total: -32.80 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -64.32 -0.07 -64.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929649442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.532 kcal (2) G-P(sol) polarization free energy of solvation -64.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds