Wall clock time and date at job start Sun Mar 29 2020 22:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.45699 * 2 1 4 4 C 1.53041 * 109.46328 * 240.02780 * 2 1 3 5 5 H 1.08997 * 109.49783 * 300.78384 * 4 2 1 6 6 C 1.52995 * 109.49975 * 60.86307 * 4 2 1 7 7 C 1.53116 * 109.27802 * 180.80609 * 4 2 1 8 8 C 1.53113 * 109.16361 * 57.65496 * 7 4 2 9 9 C 1.53036 * 109.27747 * 302.34610 * 8 7 4 10 10 N 1.46838 * 109.52615 * 59.17680 * 9 8 7 11 11 C 1.46909 * 111.00198 * 174.16034 * 10 9 8 12 12 C 1.53000 * 109.47103 * 289.55377 * 11 10 9 13 13 H 1.09003 * 109.47208 * 59.99820 * 12 11 10 14 14 O 1.42907 * 109.47138 * 299.99992 * 12 11 10 15 15 C 1.50695 * 109.46931 * 180.02562 * 12 11 10 16 16 H 1.08000 * 120.00311 * 359.97438 * 15 12 11 17 17 C 1.37880 * 120.00072 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99984 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00241 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47194 * 59.99570 * 19 17 15 21 21 H 1.48499 * 109.47490 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47218 * 299.99602 * 19 17 15 23 23 H 1.09000 * 109.47091 * 306.71545 * 1 2 3 24 24 H 1.08998 * 109.47143 * 66.71543 * 1 2 3 25 25 H 1.08998 * 109.47218 * 186.71738 * 1 2 3 26 26 H 1.09000 * 109.47500 * 60.00557 * 6 4 2 27 27 H 1.09005 * 109.46967 * 180.02562 * 6 4 2 28 28 H 1.08996 * 109.47544 * 299.99925 * 6 4 2 29 29 H 1.09001 * 109.52064 * 177.56385 * 7 4 2 30 30 H 1.08997 * 109.52304 * 297.68458 * 7 4 2 31 31 H 1.09004 * 109.50670 * 62.28630 * 8 7 4 32 32 H 1.09001 * 109.50897 * 182.36593 * 8 7 4 33 33 H 1.09007 * 109.45987 * 299.15890 * 9 8 7 34 34 H 1.08999 * 109.46462 * 179.19925 * 9 8 7 35 35 H 1.08997 * 109.46908 * 169.55841 * 11 10 9 36 36 H 1.08998 * 109.46750 * 49.55255 * 11 10 9 37 37 H 0.96698 * 113.99637 * 299.99880 * 14 12 11 38 38 H 0.96997 * 120.00781 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 1 1.6653 -1.7444 -1.2579 6 6 1.5480 0.0129 -2.4991 7 6 3.5709 -0.7360 -1.2356 8 6 4.0548 -1.4188 0.0466 9 6 3.4865 -0.6777 1.2590 10 7 2.0194 -0.6917 1.1994 11 6 1.4373 -0.1106 2.4166 12 6 1.6666 -1.0594 3.5948 13 1 2.7369 -1.2078 3.7388 14 8 1.0439 -2.3164 3.3223 15 6 1.0690 -0.4635 4.8433 16 1 0.5755 0.4962 4.8008 17 6 1.1533 -1.1429 6.0400 18 7 1.7548 -2.3113 6.0919 19 14 0.4132 -0.4040 7.5878 20 1 -1.0449 -0.2023 7.3917 21 1 0.6356 -1.3249 8.7313 22 1 1.0600 0.9024 7.8708 23 1 -0.3633 0.6144 0.8238 24 1 -0.3633 0.4062 -0.9439 25 1 -0.3633 -1.0206 0.1202 26 1 1.9241 1.0360 -2.4913 27 1 1.9111 -0.5012 -3.3891 28 1 0.4582 0.0265 -2.5071 29 1 3.9379 -1.2862 -2.1020 30 1 3.9457 0.2870 -1.2683 31 1 3.7125 -2.4536 0.0594 32 1 5.1439 -1.3953 0.0828 33 1 3.8404 0.3533 1.2532 34 1 3.8175 -1.1699 2.1735 35 1 0.3671 0.0377 2.2726 36 1 1.9124 0.8482 2.6244 37 1 0.0886 -2.2601 3.1830 38 1 1.8139 -2.7896 6.9337 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929705775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:51 Heat of formation + Delta-G solvation = -85.481831 kcal Electronic energy + Delta-G solvation = -16857.344297 eV Core-core repulsion = 14312.068320 eV Total energy + Delta-G solvation = -2545.275977 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53309 -37.65372 -34.87673 -34.19394 -33.96812 -30.40539 -28.80359 -27.04637 -26.53114 -23.76397 -22.20203 -21.51863 -20.49037 -19.01004 -16.80462 -16.64463 -16.48022 -15.97297 -15.72150 -15.51425 -14.90838 -14.84413 -14.31908 -13.77490 -13.61520 -13.21631 -13.10214 -12.90208 -12.82207 -12.78015 -12.53872 -12.43058 -12.18583 -11.98941 -11.78670 -11.46345 -11.22043 -10.93804 -10.87278 -10.65922 -10.06405 -9.02991 -8.12454 -6.39108 1.39953 1.42006 1.50226 2.38453 3.04357 3.13510 3.83584 3.88915 3.96103 4.14791 4.32607 4.37764 4.43198 4.47805 4.53640 4.63074 4.71809 4.75842 4.84789 4.90965 4.98143 5.02176 5.03984 5.11348 5.17246 5.23749 5.30789 5.36649 5.50084 5.60163 5.60797 5.77613 6.05740 6.28705 6.44297 6.75022 7.35196 7.64039 8.91864 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045720 B = 0.006673 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.269953 B = 4194.942904 C = 4487.623085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.027 0.973 4 C -0.082 4.082 5 H 0.066 0.934 6 C -0.140 4.140 7 C -0.109 4.109 8 C -0.110 4.110 9 C 0.056 3.944 10 N -0.533 5.533 11 C 0.044 3.956 12 C 0.240 3.760 13 H 0.015 0.985 14 O -0.568 6.568 15 C -0.590 4.590 16 H 0.058 0.942 17 C 0.026 3.974 18 N -0.900 5.900 19 Si 0.961 3.039 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.269 1.269 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.024 0.976 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.015 0.985 37 H 0.350 0.650 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 5.261 -15.151 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.045 0.955 4 C -0.100 4.100 5 H 0.084 0.916 6 C -0.198 4.198 7 C -0.146 4.146 8 C -0.148 4.148 9 C -0.073 4.073 10 N -0.257 5.257 11 C -0.084 4.084 12 C 0.182 3.818 13 H 0.032 0.968 14 O -0.371 6.371 15 C -0.628 4.628 16 H 0.076 0.924 17 C -0.177 4.177 18 N -0.537 5.537 19 Si 0.785 3.215 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.194 1.194 23 H 0.065 0.935 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.033 0.967 37 H 0.194 0.806 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.649 4.417 -15.016 15.666 hybrid contribution -0.404 1.232 1.419 1.922 sum 0.246 5.650 -13.598 14.727 Atomic orbital electron populations 1.21962 0.93995 1.02107 1.02169 1.21742 0.95949 0.94607 0.90294 0.95476 1.21162 0.95508 0.99756 0.93623 0.91579 1.21837 1.01609 1.00147 0.96205 1.21619 0.95108 1.00695 0.97198 1.21541 1.00062 0.99459 0.93760 1.22048 0.88033 0.98062 0.99110 1.61913 1.06722 1.55245 1.01862 1.22761 0.99573 0.95429 0.90591 1.19120 0.92144 0.81116 0.89394 0.96772 1.86504 1.23212 1.33714 1.93664 1.22037 1.39632 1.05977 0.95195 0.92424 1.25911 0.94701 0.94805 1.02239 1.70222 1.42251 1.14412 1.26825 0.85600 0.79300 0.78257 0.78330 1.19052 1.20924 1.19417 0.93513 0.89702 0.92640 0.92550 0.91327 0.91723 0.90068 0.91993 0.92422 0.90432 0.95776 0.93571 0.90388 0.96668 0.80567 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 8.42 71.98 0.61 -3.31 16 2 C 0.08 2.43 1.96 44.94 0.09 2.52 16 3 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.08 -1.98 2.40 -10.74 -0.03 -2.00 16 5 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 6 C -0.14 -2.50 8.88 71.98 0.64 -1.87 16 7 C -0.11 -2.50 5.29 30.67 0.16 -2.34 16 8 C -0.11 -3.15 6.09 30.64 0.19 -2.96 16 9 C 0.06 2.02 5.30 86.33 0.46 2.47 16 10 N -0.53 -20.03 4.32 -871.10 -3.77 -23.80 16 11 C 0.04 1.91 4.36 86.30 0.38 2.29 16 12 C 0.24 12.83 2.80 29.85 0.08 12.91 16 13 H 0.01 0.87 6.60 -2.39 -0.02 0.86 16 14 O -0.57 -31.09 12.60 -148.98 -1.88 -32.97 16 15 C -0.59 -33.34 8.76 25.60 0.22 -33.11 16 16 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 17 C 0.03 1.48 5.40 84.66 0.46 1.93 16 18 N -0.90 -55.21 12.84 21.45 0.28 -54.93 16 19 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H 0.05 1.34 6.42 -2.39 -0.02 1.32 16 24 H 0.08 1.78 6.12 -2.39 -0.01 1.76 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.06 1.08 6.31 -2.39 -0.02 1.06 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.05 1.97 6.43 -2.39 -0.02 1.96 16 35 H 0.08 3.20 5.59 -2.39 -0.01 3.19 16 36 H 0.02 0.66 8.07 -2.39 -0.02 0.65 16 37 H 0.35 17.19 9.04 -74.06 -0.67 16.52 16 38 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -65.38 292.32 0.27 -65.11 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.36 Total: 24.01 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 3.26 Total: -23.47 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -3.49 Total: -78.73 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.88 Total: -32.97 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -65.38 0.27 -65.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929705775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.368 kcal (2) G-P(sol) polarization free energy of solvation -65.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds