Wall clock time and date at job start Sun Mar 29 2020 22:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.49919 * 2 1 4 4 C 1.53113 * 109.50219 * 239.92269 * 2 1 3 5 5 C 1.53123 * 109.16127 * 182.36267 * 4 2 1 6 6 C 1.53034 * 109.27660 * 57.65212 * 5 4 2 7 7 N 1.46848 * 109.52384 * 300.82223 * 6 5 4 8 8 C 1.46899 * 111.00000 * 185.83912 * 7 6 5 9 9 C 1.53006 * 109.47391 * 76.94865 * 8 7 6 10 10 H 1.09007 * 109.46597 * 53.32652 * 9 8 7 11 11 O 1.42895 * 109.47128 * 293.32791 * 9 8 7 12 12 C 1.50691 * 109.47150 * 173.32209 * 9 8 7 13 13 H 1.08000 * 120.00611 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99952 * 180.02562 * 12 9 8 15 15 N 1.31513 * 119.99900 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00494 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47195 * 89.99512 * 16 14 12 18 18 H 1.48495 * 109.47646 * 210.00423 * 16 14 12 19 19 H 1.48505 * 109.47001 * 330.00024 * 16 14 12 20 20 C 1.46845 * 111.19927 * 61.74198 * 7 6 5 21 21 H 1.09008 * 109.45907 * 58.27183 * 20 7 6 22 22 C 1.52995 * 109.46233 * 178.23758 * 20 7 6 23 23 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47160 * 300.07653 * 1 2 3 25 25 H 1.09003 * 109.47577 * 60.07932 * 1 2 3 26 26 H 1.09006 * 109.52629 * 62.46021 * 4 2 1 27 27 H 1.08997 * 109.57538 * 302.29838 * 4 2 1 28 28 H 1.09006 * 109.50273 * 297.71628 * 5 4 2 29 29 H 1.09000 * 109.50675 * 177.59281 * 5 4 2 30 30 H 1.09002 * 109.46615 * 180.80627 * 6 5 4 31 31 H 1.09001 * 109.46495 * 60.83846 * 6 5 4 32 32 H 1.09006 * 109.47128 * 316.95302 * 8 7 6 33 33 H 1.08999 * 109.47564 * 196.94967 * 8 7 6 34 34 H 0.96700 * 114.00085 * 299.99179 * 11 9 8 35 35 H 0.97004 * 120.00028 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46926 * 52.80589 * 22 20 7 37 37 H 1.09000 * 109.46844 * 172.79612 * 22 20 7 38 38 H 1.08998 * 109.47470 * 292.79648 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2489 5 6 3.5712 -0.7706 -1.2115 6 6 4.0238 -1.4715 0.0714 7 7 3.5101 -0.7410 1.2371 8 6 4.0388 -1.3045 2.4864 9 6 5.4847 -0.8439 2.6821 10 1 5.5319 0.2431 2.6143 11 8 6.3098 -1.4207 1.6680 12 6 5.9731 -1.2843 4.0379 13 1 5.3180 -1.8378 4.6944 14 6 7.2563 -0.9806 4.4405 15 7 8.0539 -0.3061 3.6415 16 14 7.8621 -1.5271 6.1209 17 1 8.4810 -2.8725 6.0105 18 1 8.8694 -0.5585 6.6232 19 1 6.7173 -1.5849 7.0651 20 6 2.0418 -0.7232 1.2478 21 1 1.6662 -1.7465 1.2541 22 6 1.5499 0.0079 2.4986 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5151 0.8894 25 1 -0.3634 0.5126 -0.8907 26 1 1.7150 -0.1866 -2.1399 27 1 1.6458 -1.7388 -1.2703 28 1 3.9672 0.2448 -1.2306 29 1 3.9396 -1.3218 -2.0767 30 1 5.1130 -1.4941 0.1081 31 1 3.6390 -2.4912 0.0833 32 1 4.0080 -2.3930 2.4357 33 1 3.4320 -0.9626 3.3248 34 1 6.3159 -2.3877 1.6688 35 1 8.9566 -0.0921 3.9248 36 1 2.0270 0.9861 2.5588 37 1 0.4686 0.1338 2.4441 38 1 1.8037 -0.5754 3.3837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929705776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:53 Heat of formation + Delta-G solvation = -63.507034 kcal Electronic energy + Delta-G solvation = -16872.553312 eV Core-core repulsion = 14328.230233 eV Total energy + Delta-G solvation = -2544.323078 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.19259 -35.90513 -33.32790 -32.76111 -32.04498 -28.72399 -27.51710 -25.66694 -24.77926 -21.98641 -20.91513 -20.02198 -19.27466 -16.89973 -15.29431 -14.89108 -14.61203 -14.52404 -14.38605 -14.16217 -13.42668 -13.28171 -12.59243 -12.47165 -12.16014 -11.97235 -11.75087 -11.45621 -11.39613 -10.97036 -10.93039 -10.78000 -10.62830 -10.54558 -10.34057 -10.08978 -9.88846 -9.62098 -8.95929 -8.53158 -8.07608 -7.44099 -5.96314 -4.14489 3.29459 3.36596 3.39149 4.35689 4.54697 4.95368 4.98913 5.16197 5.30144 5.40913 5.60187 5.65732 5.67373 5.76447 5.79463 5.87293 5.99262 6.05331 6.12140 6.15704 6.22885 6.28807 6.32725 6.38853 6.49950 6.54107 6.58625 6.76704 6.81028 7.05267 7.67119 7.81372 7.87717 8.05534 8.27457 8.89468 9.42942 9.62737 11.07638 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044539 B = 0.006794 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.518255 B = 4120.112354 C = 4552.603525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.116 4.116 6 C 0.044 3.956 7 N -0.526 5.526 8 C 0.027 3.973 9 C 0.238 3.762 10 H 0.063 0.937 11 O -0.559 6.559 12 C -0.572 4.572 13 H 0.053 0.947 14 C 0.080 3.920 15 N -0.858 5.858 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.084 3.916 21 H 0.027 0.973 22 C -0.150 4.150 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.014 0.986 32 H 0.019 0.981 33 H 0.074 0.926 34 H 0.339 0.661 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.182 -1.103 -6.856 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.084 4.084 7 N -0.251 5.251 8 C -0.101 4.101 9 C 0.180 3.820 10 H 0.081 0.919 11 O -0.361 6.361 12 C -0.611 4.611 13 H 0.071 0.929 14 C -0.126 4.126 15 N -0.494 5.494 16 Si 0.715 3.285 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.025 4.025 21 H 0.045 0.955 22 C -0.208 4.208 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.183 0.817 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.736 0.115 -7.052 13.693 hybrid contribution -0.085 -1.773 1.237 2.163 sum -11.822 -1.658 -5.816 13.278 Atomic orbital electron populations 1.21892 0.95715 1.01380 1.01465 1.21161 0.94388 1.00411 0.94314 0.90498 1.21639 0.96471 0.99809 0.97248 1.21584 0.94821 1.01727 0.97238 1.22468 1.03357 0.93130 0.89433 1.62011 1.05258 1.54730 1.03069 1.23172 1.00853 0.95848 0.90197 1.19379 0.81874 0.94929 0.85773 0.91899 1.86550 1.71728 1.21563 1.56306 1.21650 0.98813 1.38458 1.02137 0.92853 1.25021 0.96851 0.94133 0.96600 1.70086 1.06972 1.36983 1.35332 0.86698 0.78663 0.78503 0.84632 1.20623 1.21128 1.19896 1.21588 0.89359 0.96780 0.94732 0.95516 1.22006 0.99993 1.01603 0.97168 0.93166 0.92331 0.92973 0.92535 0.92869 0.91274 0.92321 0.87129 0.96785 0.96314 0.90819 0.81741 0.93053 0.91614 0.92614 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.88 37.16 0.33 -1.28 16 2 C -0.08 -1.13 2.40 -90.55 -0.22 -1.35 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.11 -1.48 5.29 -26.61 -0.14 -1.62 16 5 C -0.12 -1.72 6.09 -26.65 -0.16 -1.88 16 6 C 0.04 0.77 5.21 -3.83 -0.02 0.75 16 7 N -0.53 -9.86 4.41 -226.69 -1.00 -10.86 16 8 C 0.03 0.56 4.58 -3.82 -0.02 0.54 16 9 C 0.24 6.08 3.04 -27.88 -0.08 6.00 16 10 H 0.06 1.82 8.14 -51.92 -0.42 1.40 16 11 O -0.56 -14.18 9.90 -35.23 -0.35 -14.53 16 12 C -0.57 -15.79 8.76 -34.44 -0.30 -16.09 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 15 N -0.86 -25.55 12.84 55.43 0.71 -24.84 16 16 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.08 1.32 1.96 -67.73 -0.13 1.19 16 21 H 0.03 0.43 8.14 -51.92 -0.42 0.01 16 22 C -0.15 -2.22 8.47 37.15 0.31 -1.90 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.61 6.31 -51.92 -0.33 0.28 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 2.19 5.26 -51.93 -0.27 1.92 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.02 0.39 7.98 -51.93 -0.41 -0.02 16 33 H 0.07 1.53 5.36 -51.93 -0.28 1.25 16 34 H 0.34 7.74 9.02 45.56 0.41 8.15 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.68 6.11 -51.93 -0.32 0.37 16 38 H 0.06 0.89 6.32 -51.93 -0.33 0.56 16 LS Contribution 290.06 15.07 4.37 4.37 Total: -1.00 -29.51 290.06 -7.54 -37.05 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.72 Total: 6.07 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.53 Total: -13.49 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.29 Total: -35.71 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.35 Total: -14.53 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.51 -7.54 -37.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929705776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.460 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds