Wall clock time and date at job start Sun Mar 29 2020 22:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.49919 * 2 1 4 4 C 1.53113 * 109.50219 * 239.92269 * 2 1 3 5 5 C 1.53123 * 109.16127 * 182.36267 * 4 2 1 6 6 C 1.53034 * 109.27660 * 57.65212 * 5 4 2 7 7 N 1.46848 * 109.52384 * 300.82223 * 6 5 4 8 8 C 1.46899 * 111.00000 * 185.83912 * 7 6 5 9 9 C 1.53006 * 109.47391 * 76.94865 * 8 7 6 10 10 H 1.09007 * 109.46597 * 53.32652 * 9 8 7 11 11 O 1.42895 * 109.47128 * 293.32791 * 9 8 7 12 12 C 1.50691 * 109.47150 * 173.32209 * 9 8 7 13 13 H 1.08000 * 120.00611 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99952 * 180.02562 * 12 9 8 15 15 N 1.31513 * 119.99900 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00494 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47195 * 89.99512 * 16 14 12 18 18 H 1.48495 * 109.47646 * 210.00423 * 16 14 12 19 19 H 1.48505 * 109.47001 * 330.00024 * 16 14 12 20 20 C 1.46845 * 111.19927 * 61.74198 * 7 6 5 21 21 H 1.09008 * 109.45907 * 58.27183 * 20 7 6 22 22 C 1.52995 * 109.46233 * 178.23758 * 20 7 6 23 23 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47160 * 300.07653 * 1 2 3 25 25 H 1.09003 * 109.47577 * 60.07932 * 1 2 3 26 26 H 1.09006 * 109.52629 * 62.46021 * 4 2 1 27 27 H 1.08997 * 109.57538 * 302.29838 * 4 2 1 28 28 H 1.09006 * 109.50273 * 297.71628 * 5 4 2 29 29 H 1.09000 * 109.50675 * 177.59281 * 5 4 2 30 30 H 1.09002 * 109.46615 * 180.80627 * 6 5 4 31 31 H 1.09001 * 109.46495 * 60.83846 * 6 5 4 32 32 H 1.09006 * 109.47128 * 316.95302 * 8 7 6 33 33 H 1.08999 * 109.47564 * 196.94967 * 8 7 6 34 34 H 0.96700 * 114.00085 * 299.99179 * 11 9 8 35 35 H 0.97004 * 120.00028 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46926 * 52.80589 * 22 20 7 37 37 H 1.09000 * 109.46844 * 172.79612 * 22 20 7 38 38 H 1.08998 * 109.47470 * 292.79648 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2489 5 6 3.5712 -0.7706 -1.2115 6 6 4.0238 -1.4715 0.0714 7 7 3.5101 -0.7410 1.2371 8 6 4.0388 -1.3045 2.4864 9 6 5.4847 -0.8439 2.6821 10 1 5.5319 0.2431 2.6143 11 8 6.3098 -1.4207 1.6680 12 6 5.9731 -1.2843 4.0379 13 1 5.3180 -1.8378 4.6944 14 6 7.2563 -0.9806 4.4405 15 7 8.0539 -0.3061 3.6415 16 14 7.8621 -1.5271 6.1209 17 1 8.4810 -2.8725 6.0105 18 1 8.8694 -0.5585 6.6232 19 1 6.7173 -1.5849 7.0651 20 6 2.0418 -0.7232 1.2478 21 1 1.6662 -1.7465 1.2541 22 6 1.5499 0.0079 2.4986 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5151 0.8894 25 1 -0.3634 0.5126 -0.8907 26 1 1.7150 -0.1866 -2.1399 27 1 1.6458 -1.7388 -1.2703 28 1 3.9672 0.2448 -1.2306 29 1 3.9396 -1.3218 -2.0767 30 1 5.1130 -1.4941 0.1081 31 1 3.6390 -2.4912 0.0833 32 1 4.0080 -2.3930 2.4357 33 1 3.4320 -0.9626 3.3248 34 1 6.3159 -2.3877 1.6688 35 1 8.9566 -0.0921 3.9248 36 1 2.0270 0.9861 2.5588 37 1 0.4686 0.1338 2.4441 38 1 1.8037 -0.5754 3.3837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929705776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:52 Heat of formation + Delta-G solvation = -84.010818 kcal Electronic energy + Delta-G solvation = -16873.442422 eV Core-core repulsion = 14328.230233 eV Total energy + Delta-G solvation = -2545.212189 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53048 -37.74082 -34.80293 -34.25940 -33.89496 -30.43049 -28.88001 -26.93581 -26.51505 -23.58488 -22.14297 -21.72765 -20.48219 -18.97775 -16.79129 -16.58070 -16.37572 -16.33689 -15.64992 -15.47128 -14.94113 -14.77211 -14.25612 -13.69411 -13.61208 -13.19010 -13.10241 -12.93266 -12.82908 -12.81398 -12.48467 -12.44065 -12.13154 -11.95234 -11.75965 -11.46672 -11.20921 -11.01662 -10.88234 -10.69264 -9.95560 -8.99321 -8.11551 -6.37990 1.40534 1.41213 1.52143 2.39059 3.10422 3.13617 3.84801 3.89013 4.03225 4.15404 4.29004 4.42046 4.45812 4.51342 4.58026 4.63044 4.68837 4.75375 4.89651 4.91503 5.00636 5.03925 5.10293 5.16510 5.22674 5.27519 5.32336 5.42070 5.51019 5.59486 5.64651 5.79391 6.06419 6.38263 6.48523 6.76000 7.34357 7.55860 8.92568 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.044539 B = 0.006794 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.518255 B = 4120.112354 C = 4552.603525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.112 4.112 6 C 0.044 3.956 7 N -0.542 5.542 8 C 0.045 3.955 9 C 0.241 3.759 10 H 0.019 0.981 11 O -0.570 6.570 12 C -0.587 4.587 13 H 0.058 0.942 14 C 0.026 3.974 15 N -0.899 5.899 16 Si 0.960 3.040 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.081 3.919 21 H 0.029 0.971 22 C -0.147 4.147 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.075 0.925 34 H 0.350 0.650 35 H 0.261 0.739 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.940 -1.837 -6.961 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.147 4.147 5 C -0.150 4.150 6 C -0.084 4.084 7 N -0.266 5.266 8 C -0.083 4.083 9 C 0.184 3.816 10 H 0.037 0.963 11 O -0.373 6.373 12 C -0.625 4.625 13 H 0.076 0.924 14 C -0.176 4.176 15 N -0.536 5.536 16 Si 0.785 3.215 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.027 4.027 21 H 0.047 0.953 22 C -0.204 4.204 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.093 0.907 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.517 -0.628 -7.163 15.310 hybrid contribution 0.458 -1.528 1.217 2.007 sum -13.058 -2.156 -5.946 14.509 Atomic orbital electron populations 1.21840 0.93208 1.02172 1.02584 1.21159 0.96383 0.99248 0.93315 0.91840 1.21625 0.94608 1.00575 0.97865 1.21558 0.96597 1.00647 0.96221 1.22401 1.01724 0.93825 0.90421 1.61943 1.07598 1.54839 1.02262 1.22762 0.98052 0.95652 0.91844 1.19154 0.84622 0.92553 0.85311 0.96312 1.86503 1.72229 1.22462 1.56123 1.22035 0.99174 1.38200 1.03099 0.92425 1.25898 0.97060 0.94053 1.00613 1.70230 1.07365 1.38463 1.37585 0.85555 0.78166 0.78147 0.79662 1.19784 1.20890 1.18937 1.21734 0.87069 0.97366 0.96499 0.95327 1.21991 1.01787 1.00347 0.96321 0.92476 0.91817 0.91355 0.90344 0.92029 0.92797 0.90532 0.89923 0.96210 0.96216 0.90682 0.80593 0.93029 0.93116 0.89622 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.88 71.98 0.64 -1.95 16 2 C -0.08 -2.04 2.40 -10.75 -0.03 -2.07 16 3 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 4 C -0.11 -2.55 5.29 30.67 0.16 -2.39 16 5 C -0.11 -3.20 6.09 30.65 0.19 -3.02 16 6 C 0.04 1.54 5.21 86.32 0.45 1.99 16 7 N -0.54 -20.41 4.41 -871.11 -3.84 -24.25 16 8 C 0.04 1.92 4.58 86.31 0.40 2.31 16 9 C 0.24 12.76 3.04 29.85 0.09 12.85 16 10 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 11 O -0.57 -29.90 9.90 -148.98 -1.47 -31.38 16 12 C -0.59 -32.85 8.76 25.60 0.22 -32.63 16 13 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 14 C 0.03 1.48 5.40 84.66 0.46 1.94 16 15 N -0.90 -54.77 12.84 21.45 0.28 -54.50 16 16 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 20 C 0.08 2.45 1.96 44.93 0.09 2.54 16 21 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 22 C -0.15 -4.18 8.47 71.98 0.61 -3.57 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.11 6.31 -2.38 -0.02 1.10 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 3.36 5.26 -2.39 -0.01 3.35 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.02 0.83 7.98 -2.38 -0.02 0.81 16 33 H 0.07 3.16 5.36 -2.39 -0.01 3.14 16 34 H 0.35 16.41 9.02 -74.06 -0.67 15.74 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.89 6.11 -2.39 -0.01 1.87 16 38 H 0.05 1.42 6.32 -2.39 -0.02 1.41 16 Total: -1.00 -64.05 290.06 0.62 -63.44 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.36 Total: 24.82 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 3.28 Total: -23.99 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -3.57 Total: -78.74 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.47 Total: -31.38 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -64.05 0.62 -63.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929705776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.575 kcal (2) G-P(sol) polarization free energy of solvation -64.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds